Gchil7557.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7557.t1
Unique Name	Gchil7557.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	700

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1882537..1884636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005647732.1
Preferred name	APC3
PFAMs	ANAPC3,TPR_1,TPR_11,TPR_16,TPR_8
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03350
KEGG Pathway	ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG Module	M00389
Evalue	5.03e-75
EggNOG OGs	COG0457@1\|root,KOG1126@2759\|Eukaryota,37KQ2@33090\|Viridiplantae,34K1D@3041\|Chlorophyta
Description	Tetratricopeptide repeat
COG category	D
BRITE	ko00000,ko00001,ko00002,ko01009,ko03036,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7557	Gchil7557	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1882537..1884636 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7557.t1.start1	Gchil7557.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1882537..1882539 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7557.t1.CDS1	Gchil7557.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1882537..1884636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7557.t1.exon1	Gchil7557.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1882537..1884636 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7557.t1.stop1	Gchil7557.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1884634..1884636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7557.t1	Gchil7557.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1882537..1884636 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1882537..1884636+
coding sequence from alignment at tig00000007_pilon:1882537..1884636+

mRNA sequence

>Gchil7557.t1 ID=Gchil7557.t1|Name=Gchil7557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=700bp
MYTAPPPSNHSLSEHLLRTAAEHSLRAFLEPNAVFLAQLLHTTYPSHASA
NLLATAHLRQGNFSQAAQVLTPPVTPENRYLYAVCLTRIGTPDALRDAET
YLRGAHASIDVDIHSIPLNSIPGSAAGLYLLGSICQRTGRKDEAIALYRR
AINANPTLWLAFEALANMGIVTRSEVVLPGQLDSEALERLQQQPQFFPHA
IDTVTPRQTKPPRETSALRPHSNSMRHMAVRTPRESDFVTPSPIMSRLQT
RAPNEMRTPSAPQHVGRHGIRRASRITGSPNSAMNGLRLGRRSRNVALDD
SVRNPVDLFATTPDRDTRSVTVPIGSSTKSKLDGSPFTMEIPLGTDNEKN
EIVSAMDLIRSIGQIVSELGRFRCARAIELSNCLPAKHRNSGFVLSLRGK
AFLERGDYVAAELEFKKALVVDPMRTDGVVEYYSTVLWHLKKEKALAQLA
ISAQRIYPISSSAWCAAGNCYSIQQDPDAALKFFERAISTSKTPNAYAYT
LCGHEYVVKEDFDSALASYREALNIDERHYNAMYGIGQVLQKQEKFGMAQ
NHFRNAVLVNPLNSTLHYHLGVSMAAGANMVAEKASYKTTQHALISALAE
LETAANLDPRNPVPRFERAKILIAMNRLPDARKQLEDLRESLPKEAEVHY
QLSLVCQHLGDRDEALQALHTALDIEPKERKYKKALDSLSNALEASACL*

spliced messenger RNA

>Gchil7557.t1 ID=Gchil7557.t1|Name=Gchil7557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000007_pilon:1882537..1884636+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACCGCACCCCCCCCTTCTAACCACAGTCTATCGGAGCACCTTCT
TCGTACGGCAGCAGAACATTCTCTTCGCGCTTTTTTGGAGCCCAACGCCG
TTTTCCTTGCCCAATTGCTCCACACAACATACCCATCACATGCATCCGCT
AATCTACTCGCTACCGCTCATCTGCGTCAAGGCAATTTCTCACAAGCAGC
TCAAGTTCTAACTCCCCCCGTAACTCCTGAAAATCGCTACCTCTACGCTG
TATGTCTCACTCGTATCGGCACCCCAGACGCTCTTCGCGATGCTGAAACC
TATCTTCGCGGCGCCCATGCTTCAATTGACGTCGATATTCACTCAATTCC
ACTTAATTCTATTCCTGGTTCCGCAGCTGGGCTTTATCTCTTGGGCTCTA
TCTGTCAGCGAACAGGTCGAAAAGATGAAGCAATTGCTTTGTACCGCCGA
GCCATCAACGCCAACCCAACACTATGGCTTGCCTTTGAAGCCCTAGCAAA
CATGGGAATTGTCACAAGGTCAGAGGTTGTGCTTCCCGGACAACTTGATT
CCGAAGCTCTGGAACGCCTGCAGCAACAGCCCCAGTTCTTTCCGCATGCT
ATTGATACCGTGACACCCCGCCAGACAAAACCTCCGCGAGAGACATCAGC
ATTGCGGCCGCATTCAAACTCAATGCGCCATATGGCCGTTAGAACTCCTC
GCGAATCGGACTTTGTAACACCGTCTCCGATAATGAGTCGTTTACAAACG
CGCGCTCCCAACGAGATGCGCACGCCATCGGCACCCCAACATGTGGGACG
TCATGGCATCAGACGAGCATCCAGGATTACGGGTTCGCCGAATAGCGCCA
TGAACGGACTTCGCTTGGGGCGGCGTTCAAGAAACGTGGCGCTGGATGAT
TCAGTTCGAAATCCGGTGGACTTGTTCGCCACCACCCCTGATAGAGACAC
TAGATCGGTCACAGTGCCCATCGGTTCCTCCACCAAGAGCAAGCTAGACG
GCTCTCCATTCACTATGGAAATACCTTTGGGGACAGACAACGAAAAAAAT
GAGATTGTCAGCGCAATGGATCTGATTCGGAGCATAGGTCAAATAGTTTC
CGAACTGGGTCGCTTCCGATGCGCTCGTGCGATTGAACTGTCGAATTGCC
TTCCGGCCAAGCATCGAAACAGCGGTTTCGTGCTCTCCCTGAGAGGAAAA
GCATTTCTCGAACGTGGGGACTATGTAGCGGCGGAGCTAGAGTTCAAGAA
GGCACTTGTTGTAGACCCTATGCGTACAGACGGGGTGGTGGAGTACTACT
CGACGGTCCTCTGGCACCTGAAGAAGGAAAAGGCTTTAGCTCAACTGGCC
ATTAGCGCGCAACGGATCTATCCGATATCGTCGAGTGCTTGGTGCGCCGC
AGGGAATTGTTATTCGATACAACAAGATCCTGATGCAGCCCTCAAGTTCT
TCGAACGAGCCATTTCTACATCAAAGACGCCCAATGCTTACGCCTACACA
CTGTGTGGGCATGAGTACGTCGTGAAGGAAGACTTCGATTCTGCGCTCGC
ATCGTATCGAGAGGCGCTTAATATTGATGAAAGACATTATAACGCTATGT
ATGGAATCGGTCAAGTTTTGCAAAAACAAGAGAAGTTTGGCATGGCTCAA
AACCATTTCAGGAATGCTGTGCTTGTGAATCCCCTAAACTCGACCCTCCA
CTACCATCTGGGAGTTTCGATGGCGGCAGGAGCGAATATGGTGGCGGAAA
AAGCCTCCTACAAGACGACTCAACATGCACTGATTTCGGCGTTGGCAGAG
CTTGAAACCGCAGCCAATTTGGATCCACGAAATCCTGTTCCAAGATTCGA
GAGGGCAAAGATTTTGATCGCAATGAATAGGCTTCCGGATGCACGAAAGC
AACTGGAAGACCTGAGAGAATCGCTTCCCAAAGAGGCGGAAGTTCATTAT
CAGTTGAGCCTTGTATGCCAACATCTCGGGGACAGAGACGAGGCCCTGCA
AGCTTTGCACACAGCTCTCGATATCGAACCAAAAGAAAGAAAGTACAAGA
AAGCTTTAGATTCGCTAAGCAATGCGCTCGAAGCGTCAGCTTGTCTGTAG

protein sequence of Gchil7557.t1

>Gchil7557.t1 ID=Gchil7557.t1|Name=Gchil7557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=700bp
MYTAPPPSNHSLSEHLLRTAAEHSLRAFLEPNAVFLAQLLHTTYPSHASA
NLLATAHLRQGNFSQAAQVLTPPVTPENRYLYAVCLTRIGTPDALRDAET
YLRGAHASIDVDIHSIPLNSIPGSAAGLYLLGSICQRTGRKDEAIALYRR
AINANPTLWLAFEALANMGIVTRSEVVLPGQLDSEALERLQQQPQFFPHA
IDTVTPRQTKPPRETSALRPHSNSMRHMAVRTPRESDFVTPSPIMSRLQT
RAPNEMRTPSAPQHVGRHGIRRASRITGSPNSAMNGLRLGRRSRNVALDD
SVRNPVDLFATTPDRDTRSVTVPIGSSTKSKLDGSPFTMEIPLGTDNEKN
EIVSAMDLIRSIGQIVSELGRFRCARAIELSNCLPAKHRNSGFVLSLRGK
AFLERGDYVAAELEFKKALVVDPMRTDGVVEYYSTVLWHLKKEKALAQLA
ISAQRIYPISSSAWCAAGNCYSIQQDPDAALKFFERAISTSKTPNAYAYT
LCGHEYVVKEDFDSALASYREALNIDERHYNAMYGIGQVLQKQEKFGMAQ
NHFRNAVLVNPLNSTLHYHLGVSMAAGANMVAEKASYKTTQHALISALAE
LETAANLDPRNPVPRFERAKILIAMNRLPDARKQLEDLRESLPKEAEVHY
QLSLVCQHLGDRDEALQALHTALDIEPKERKYKKALDSLSNALEASACL*

mRNA from alignment at tig00000007_pilon:1882537..1884636+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7557.t1 ID=Gchil7557.t1|Name=Gchil7557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2100bp|location=Sequence derived from alignment at tig00000007_pilon:1882537..1884636+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACACCGCACCCCCCCCTTCTAACCACAGTCTATCGGAGCACCTTCT
TCGTACGGCAGCAGAACATTCTCTTCGCGCTTTTTTGGAGCCCAACGCCG
TTTTCCTTGCCCAATTGCTCCACACAACATACCCATCACATGCATCCGCT
AATCTACTCGCTACCGCTCATCTGCGTCAAGGCAATTTCTCACAAGCAGC
TCAAGTTCTAACTCCCCCCGTAACTCCTGAAAATCGCTACCTCTACGCTG
TATGTCTCACTCGTATCGGCACCCCAGACGCTCTTCGCGATGCTGAAACC
TATCTTCGCGGCGCCCATGCTTCAATTGACGTCGATATTCACTCAATTCC
ACTTAATTCTATTCCTGGTTCCGCAGCTGGGCTTTATCTCTTGGGCTCTA
TCTGTCAGCGAACAGGTCGAAAAGATGAAGCAATTGCTTTGTACCGCCGA
GCCATCAACGCCAACCCAACACTATGGCTTGCCTTTGAAGCCCTAGCAAA
CATGGGAATTGTCACAAGGTCAGAGGTTGTGCTTCCCGGACAACTTGATT
CCGAAGCTCTGGAACGCCTGCAGCAACAGCCCCAGTTCTTTCCGCATGCT
ATTGATACCGTGACACCCCGCCAGACAAAACCTCCGCGAGAGACATCAGC
ATTGCGGCCGCATTCAAACTCAATGCGCCATATGGCCGTTAGAACTCCTC
GCGAATCGGACTTTGTAACACCGTCTCCGATAATGAGTCGTTTACAAACG
CGCGCTCCCAACGAGATGCGCACGCCATCGGCACCCCAACATGTGGGACG
TCATGGCATCAGACGAGCATCCAGGATTACGGGTTCGCCGAATAGCGCCA
TGAACGGACTTCGCTTGGGGCGGCGTTCAAGAAACGTGGCGCTGGATGAT
TCAGTTCGAAATCCGGTGGACTTGTTCGCCACCACCCCTGATAGAGACAC
TAGATCGGTCACAGTGCCCATCGGTTCCTCCACCAAGAGCAAGCTAGACG
GCTCTCCATTCACTATGGAAATACCTTTGGGGACAGACAACGAAAAAAAT
GAGATTGTCAGCGCAATGGATCTGATTCGGAGCATAGGTCAAATAGTTTC
CGAACTGGGTCGCTTCCGATGCGCTCGTGCGATTGAACTGTCGAATTGCC
TTCCGGCCAAGCATCGAAACAGCGGTTTCGTGCTCTCCCTGAGAGGAAAA
GCATTTCTCGAACGTGGGGACTATGTAGCGGCGGAGCTAGAGTTCAAGAA
GGCACTTGTTGTAGACCCTATGCGTACAGACGGGGTGGTGGAGTACTACT
CGACGGTCCTCTGGCACCTGAAGAAGGAAAAGGCTTTAGCTCAACTGGCC
ATTAGCGCGCAACGGATCTATCCGATATCGTCGAGTGCTTGGTGCGCCGC
AGGGAATTGTTATTCGATACAACAAGATCCTGATGCAGCCCTCAAGTTCT
TCGAACGAGCCATTTCTACATCAAAGACGCCCAATGCTTACGCCTACACA
CTGTGTGGGCATGAGTACGTCGTGAAGGAAGACTTCGATTCTGCGCTCGC
ATCGTATCGAGAGGCGCTTAATATTGATGAAAGACATTATAACGCTATGT
ATGGAATCGGTCAAGTTTTGCAAAAACAAGAGAAGTTTGGCATGGCTCAA
AACCATTTCAGGAATGCTGTGCTTGTGAATCCCCTAAACTCGACCCTCCA
CTACCATCTGGGAGTTTCGATGGCGGCAGGAGCGAATATGGTGGCGGAAA
AAGCCTCCTACAAGACGACTCAACATGCACTGATTTCGGCGTTGGCAGAG
CTTGAAACCGCAGCCAATTTGGATCCACGAAATCCTGTTCCAAGATTCGA
GAGGGCAAAGATTTTGATCGCAATGAATAGGCTTCCGGATGCACGAAAGC
AACTGGAAGACCTGAGAGAATCGCTTCCCAAAGAGGCGGAAGTTCATTAT
CAGTTGAGCCTTGTATGCCAACATCTCGGGGACAGAGACGAGGCCCTGCA
AGCTTTGCACACAGCTCTCGATATCGAACCAAAAGAAAGAAAGTACAAGA
AAGCTTTAGATTCGCTAAGCAATGCGCTCGAAGCGTCAGCTTGTCTGTAG

Coding sequence (CDS) from alignment at tig00000007_pilon:1882537..1884636+

>Gchil7557.t1 ID=Gchil7557.t1|Name=Gchil7557.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2100bp|location=Sequence derived from alignment at tig00000007_pilon:1882537..1884636+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACACCGCACCCCCCCCTTCTAACCACAGTCTATCGGAGCACCTTCT
TCGTACGGCAGCAGAACATTCTCTTCGCGCTTTTTTGGAGCCCAACGCCG
TTTTCCTTGCCCAATTGCTCCACACAACATACCCATCACATGCATCCGCT
AATCTACTCGCTACCGCTCATCTGCGTCAAGGCAATTTCTCACAAGCAGC
TCAAGTTCTAACTCCCCCCGTAACTCCTGAAAATCGCTACCTCTACGCTG
TATGTCTCACTCGTATCGGCACCCCAGACGCTCTTCGCGATGCTGAAACC
TATCTTCGCGGCGCCCATGCTTCAATTGACGTCGATATTCACTCAATTCC
ACTTAATTCTATTCCTGGTTCCGCAGCTGGGCTTTATCTCTTGGGCTCTA
TCTGTCAGCGAACAGGTCGAAAAGATGAAGCAATTGCTTTGTACCGCCGA
GCCATCAACGCCAACCCAACACTATGGCTTGCCTTTGAAGCCCTAGCAAA
CATGGGAATTGTCACAAGGTCAGAGGTTGTGCTTCCCGGACAACTTGATT
CCGAAGCTCTGGAACGCCTGCAGCAACAGCCCCAGTTCTTTCCGCATGCT
ATTGATACCGTGACACCCCGCCAGACAAAACCTCCGCGAGAGACATCAGC
ATTGCGGCCGCATTCAAACTCAATGCGCCATATGGCCGTTAGAACTCCTC
GCGAATCGGACTTTGTAACACCGTCTCCGATAATGAGTCGTTTACAAACG
CGCGCTCCCAACGAGATGCGCACGCCATCGGCACCCCAACATGTGGGACG
TCATGGCATCAGACGAGCATCCAGGATTACGGGTTCGCCGAATAGCGCCA
TGAACGGACTTCGCTTGGGGCGGCGTTCAAGAAACGTGGCGCTGGATGAT
TCAGTTCGAAATCCGGTGGACTTGTTCGCCACCACCCCTGATAGAGACAC
TAGATCGGTCACAGTGCCCATCGGTTCCTCCACCAAGAGCAAGCTAGACG
GCTCTCCATTCACTATGGAAATACCTTTGGGGACAGACAACGAAAAAAAT
GAGATTGTCAGCGCAATGGATCTGATTCGGAGCATAGGTCAAATAGTTTC
CGAACTGGGTCGCTTCCGATGCGCTCGTGCGATTGAACTGTCGAATTGCC
TTCCGGCCAAGCATCGAAACAGCGGTTTCGTGCTCTCCCTGAGAGGAAAA
GCATTTCTCGAACGTGGGGACTATGTAGCGGCGGAGCTAGAGTTCAAGAA
GGCACTTGTTGTAGACCCTATGCGTACAGACGGGGTGGTGGAGTACTACT
CGACGGTCCTCTGGCACCTGAAGAAGGAAAAGGCTTTAGCTCAACTGGCC
ATTAGCGCGCAACGGATCTATCCGATATCGTCGAGTGCTTGGTGCGCCGC
AGGGAATTGTTATTCGATACAACAAGATCCTGATGCAGCCCTCAAGTTCT
TCGAACGAGCCATTTCTACATCAAAGACGCCCAATGCTTACGCCTACACA
CTGTGTGGGCATGAGTACGTCGTGAAGGAAGACTTCGATTCTGCGCTCGC
ATCGTATCGAGAGGCGCTTAATATTGATGAAAGACATTATAACGCTATGT
ATGGAATCGGTCAAGTTTTGCAAAAACAAGAGAAGTTTGGCATGGCTCAA
AACCATTTCAGGAATGCTGTGCTTGTGAATCCCCTAAACTCGACCCTCCA
CTACCATCTGGGAGTTTCGATGGCGGCAGGAGCGAATATGGTGGCGGAAA
AAGCCTCCTACAAGACGACTCAACATGCACTGATTTCGGCGTTGGCAGAG
CTTGAAACCGCAGCCAATTTGGATCCACGAAATCCTGTTCCAAGATTCGA
GAGGGCAAAGATTTTGATCGCAATGAATAGGCTTCCGGATGCACGAAAGC
AACTGGAAGACCTGAGAGAATCGCTTCCCAAAGAGGCGGAAGTTCATTAT
CAGTTGAGCCTTGTATGCCAACATCTCGGGGACAGAGACGAGGCCCTGCA
AGCTTTGCACACAGCTCTCGATATCGAACCAAAAGAAAGAAAGTACAAGA
AAGCTTTAGATTCGCTAAGCAATGCGCTCGAAGCGTCAGCTTGTCTGTAG