Gchil7548.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7548.t1
Unique NameGchil7548.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1865271..1866556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1279017.AQYJ01000028_gene2429
Preferred nameadhC
PFAMsADH_N,ADH_zinc_N
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273
KEGG koko:K00121
KEGG ReactionR00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204
Evalue1.06e-195
EggNOG OGsCOG1062@1|root,COG1062@2|Bacteria,1MUK4@1224|Proteobacteria,1RNQ4@1236|Gammaproteobacteria,4644Q@72275|Alteromonadaceae
EC1.1.1.1,1.1.1.284
DescriptionBelongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7548Gchil7548Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1865271..1866556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1Gchil7548.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1865271..1866556 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1.stop1Gchil7548.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1865271..1865273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1.CDS1Gchil7548.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1865271..1865549 -
Gchil7548.t1.CDS2Gchil7548.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1865696..1866556 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1.exon1Gchil7548.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1865271..1865549 -
Gchil7548.t1.exon2Gchil7548.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1865696..1866556 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1.intron1Gchil7548.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1865550..1865695 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7548.t1.start1Gchil7548.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1866554..1866556 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7548.t1 ID=Gchil7548.t1|Name=Gchil7548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=380bp
MTMVSNKTITCRAAVAWKPEAPLSIETIEVAPPGPNEVRIKVTATGVCHT
DSYTLSGQDSEGVFPAILGHEGAGIVESIGEKVTHVQPGDHVIMAYIPEC
GECKFCKSTKTNLCSKIRATQGKGLMPDGTVRFTCNGQSVYHYMGTSTFS
EYTVVADISVVKIREDAPLEKVCLLACGITTGVGAVRKTCKVEPGSSVGV
FGLGGVGLSVVQGAKLAGASSIYVVDVNPSKFDIAKQLGATHCVNPKEHD
QPIQKVLVDMTDGGLDYTFECIGRVETMRAALEACHKGWGESCIIGVAGA
GQEITTRPFQLVTGRVWRGSAFGGYKSRSDLPGLIDEYMNGEVKIDEFVT
ETYLLEKIKDAFHDMHSGKNIRGVIMYTE*
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spliced messenger RNA

>Gchil7548.t1 ID=Gchil7548.t1|Name=Gchil7548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000007_pilon:1865271..1866556- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATGGTATCCAATAAGACAATCACCTGCCGTGCAGCAGTCGCATG
GAAGCCGGAAGCGCCACTTTCCATTGAGACCATCGAGGTCGCACCGCCCG
GTCCGAATGAAGTGCGCATCAAGGTAACAGCCACCGGCGTGTGTCATACT
GACTCCTACACCCTGAGCGGCCAGGATTCTGAGGGTGTGTTCCCCGCCAT
TCTCGGTCATGAGGGCGCTGGAATCGTCGAATCAATAGGGGAGAAGGTTA
CTCATGTACAGCCCGGCGATCATGTCATCATGGCCTACATTCCTGAATGT
GGCGAGTGCAAGTTTTGTAAATCGACAAAGACTAATCTCTGTTCTAAAAT
CCGTGCTACGCAAGGCAAGGGACTCATGCCAGACGGTACTGTGCGCTTCA
CTTGCAATGGACAGTCAGTCTATCACTACATGGGCACATCTACGTTTTCT
GAATACACCGTAGTCGCGGATATTTCCGTCGTCAAGATTAGAGAAGATGC
CCCGCTCGAAAAGGTGTGCCTTCTGGCATGTGGAATCACAACTGGCGTTG
GTGCTGTGCGCAAGACGTGCAAGGTCGAACCTGGTTCATCGGTGGGCGTA
TTTGGACTCGGTGGCGTCGGCCTCAGCGTAGTCCAAGGCGCGAAGCTCGC
TGGTGCTTCATCGATATATGTTGTTGATGTCAATCCAAGCAAGTTTGATA
TAGCCAAACAATTGGGTGCCACGCATTGTGTCAATCCGAAAGAACACGAT
CAGCCCATTCAAAAGGTGCTCGTTGATATGACTGATGGCGGGTTGGACTA
TACATTTGAATGTATTGGACGTGTCGAAACTATGCGCGCAGCTCTCGAAG
CCTGTCATAAGGGGTGGGGAGAAAGTTGTATCATAGGGGTCGCAGGCGCT
GGACAAGAAATAACGACAAGACCTTTCCAACTGGTCACCGGTCGCGTGTG
GCGCGGGTCCGCGTTCGGCGGGTACAAGAGTCGCTCAGACCTTCCTGGCC
TTATTGACGAGTACATGAATGGTGAAGTGAAGATTGATGAGTTTGTCACG
GAAACATACCTACTGGAAAAGATCAAGGACGCGTTTCATGATATGCACTC
AGGGAAAAACATTAGAGGAGTTATAATGTACACTGAATGA
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protein sequence of Gchil7548.t1

>Gchil7548.t1 ID=Gchil7548.t1|Name=Gchil7548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=380bp
MTMVSNKTITCRAAVAWKPEAPLSIETIEVAPPGPNEVRIKVTATGVCHT
DSYTLSGQDSEGVFPAILGHEGAGIVESIGEKVTHVQPGDHVIMAYIPEC
GECKFCKSTKTNLCSKIRATQGKGLMPDGTVRFTCNGQSVYHYMGTSTFS
EYTVVADISVVKIREDAPLEKVCLLACGITTGVGAVRKTCKVEPGSSVGV
FGLGGVGLSVVQGAKLAGASSIYVVDVNPSKFDIAKQLGATHCVNPKEHD
QPIQKVLVDMTDGGLDYTFECIGRVETMRAALEACHKGWGESCIIGVAGA
GQEITTRPFQLVTGRVWRGSAFGGYKSRSDLPGLIDEYMNGEVKIDEFVT
ETYLLEKIKDAFHDMHSGKNIRGVIMYTE*
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mRNA from alignment at tig00000007_pilon:1865271..1866556-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7548.t1 ID=Gchil7548.t1|Name=Gchil7548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1286bp|location=Sequence derived from alignment at tig00000007_pilon:1865271..1866556- (Gracilaria chilensis NLEC103_M9 male)
ATGACAATGGTATCCAATAAGACAATCACCTGCCGTGCAGCAGTCGCATG
GAAGCCGGAAGCGCCACTTTCCATTGAGACCATCGAGGTCGCACCGCCCG
GTCCGAATGAAGTGCGCATCAAGGTAACAGCCACCGGCGTGTGTCATACT
GACTCCTACACCCTGAGCGGCCAGGATTCTGAGGGTGTGTTCCCCGCCAT
TCTCGGTCATGAGGGCGCTGGAATCGTCGAATCAATAGGGGAGAAGGTTA
CTCATGTACAGCCCGGCGATCATGTCATCATGGCCTACATTCCTGAATGT
GGCGAGTGCAAGTTTTGTAAATCGACAAAGACTAATCTCTGTTCTAAAAT
CCGTGCTACGCAAGGCAAGGGACTCATGCCAGACGGTACTGTGCGCTTCA
CTTGCAATGGACAGTCAGTCTATCACTACATGGGCACATCTACGTTTTCT
GAATACACCGTAGTCGCGGATATTTCCGTCGTCAAGATTAGAGAAGATGC
CCCGCTCGAAAAGGTGTGCCTTCTGGCATGTGGAATCACAACTGGCGTTG
GTGCTGTGCGCAAGACGTGCAAGGTCGAACCTGGTTCATCGGTGGGCGTA
TTTGGACTCGGTGGCGTCGGCCTCAGCGTAGTCCAAGGCGCGAAGCTCGC
TGGTGCTTCATCGATATATGTTGTTGATGTCAATCCAAGCAAGTTTGATA
TAGCCAAACAATTGGGTGCCACGCATTGTGTCAATCCGAAAGAACACGAT
CAGCCCATTCAAAAGGTGCTCGTTGATATGACTGATGGCGGGTTGGACTA
TACATTTGAATGTATTGGACGTGTCGAAACTATGCGCGCAGCTCTCGAAG
CCTGTCATAAGGTAAGTTCAGGCATCGTCCCATTGACTTCCTGCGATTTC
TATTTAGTGCCATTGCGTTCAAGACCAATGCGTTCATTGCCTGCCGTTTT
ACCCACAGCTCTAACAAATCACGTCTCACAACTGGTGCCTCATTCCCAAA
TTTACAGGGGTGGGGAGAAAGTTGTATCATAGGGGTCGCAGGCGCTGGAC
AAGAAATAACGACAAGACCTTTCCAACTGGTCACCGGTCGCGTGTGGCGC
GGGTCCGCGTTCGGCGGGTACAAGAGTCGCTCAGACCTTCCTGGCCTTAT
TGACGAGTACATGAATGGTGAAGTGAAGATTGATGAGTTTGTCACGGAAA
CATACCTACTGGAAAAGATCAAGGACGCGTTTCATGATATGCACTCAGGG
AAAAACATTAGAGGAGTTATAATGTACACTGAATGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1865271..1866556-

>Gchil7548.t1 ID=Gchil7548.t1|Name=Gchil7548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000007_pilon:1865271..1866556- (Gracilaria chilensis NLEC103_M9 male)
ATGACAATGGTATCCAATAAGACAATCACCTGCCGTGCAGCAGTCGCATG
GAAGCCGGAAGCGCCACTTTCCATTGAGACCATCGAGGTCGCACCGCCCG
GTCCGAATGAAGTGCGCATCAAGGTAACAGCCACCGGCGTGTGTCATACT
GACTCCTACACCCTGAGCGGCCAGGATTCTGAGGGTGTGTTCCCCGCCAT
TCTCGGTCATGAGGGCGCTGGAATCGTCGAATCAATAGGGGAGAAGGTTA
CTCATGTACAGCCCGGCGATCATGTCATCATGGCCTACATTCCTGAATGT
GGCGAGTGCAAGTTTTGTAAATCGACAAAGACTAATCTCTGTTCTAAAAT
CCGTGCTACGCAAGGCAAGGGACTCATGCCAGACGGTACTGTGCGCTTCA
CTTGCAATGGACAGTCAGTCTATCACTACATGGGCACATCTACGTTTTCT
GAATACACCGTAGTCGCGGATATTTCCGTCGTCAAGATTAGAGAAGATGC
CCCGCTCGAAAAGGTGTGCCTTCTGGCATGTGGAATCACAACTGGCGTTG
GTGCTGTGCGCAAGACGTGCAAGGTCGAACCTGGTTCATCGGTGGGCGTA
TTTGGACTCGGTGGCGTCGGCCTCAGCGTAGTCCAAGGCGCGAAGCTCGC
TGGTGCTTCATCGATATATGTTGTTGATGTCAATCCAAGCAAGTTTGATA
TAGCCAAACAATTGGGTGCCACGCATTGTGTCAATCCGAAAGAACACGAT
CAGCCCATTCAAAAGGTGCTCGTTGATATGACTGATGGCGGGTTGGACTA
TACATTTGAATGTATTGGACGTGTCGAAACTATGCGCGCAGCTCTCGAAG
CCTGTCATAAGGGGTGGGGAGAAAGTTGTATCATAGGGGTCGCAGGCGCT
GGACAAGAAATAACGACAAGACCTTTCCAACTGGTCACCGGTCGCGTGTG
GCGCGGGTCCGCGTTCGGCGGGTACAAGAGTCGCTCAGACCTTCCTGGCC
TTATTGACGAGTACATGAATGGTGAAGTGAAGATTGATGAGTTTGTCACG
GAAACATACCTACTGGAAAAGATCAAGGACGCGTTTCATGATATGCACTC
AGGGAAAAACATTAGAGGAGTTATAATGTACACTGAATGA
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