Gchil7544.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7544.t1
Unique NameGchil7544.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1813553..1814047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo140787
Max annot lvl4776|Peronosporales
Evalue2.2e-14
EggNOG OGs2C1WF@1|root,2SP6D@2759|Eukaryota,3QFWG@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7544Gchil7544Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1813553..1814047 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7544.t1.start1Gchil7544.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1813553..1813555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7544.t1.CDS1Gchil7544.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1813553..1814047 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7544.t1.exon1Gchil7544.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1813553..1814047 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7544.t1.stop1Gchil7544.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1814045..1814047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7544.t1Gchil7544.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1813553..1814047 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7544.t1 ID=Gchil7544.t1|Name=Gchil7544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=165bp
MPRICTGASSASNCDTDKPTKPIVITAVDAIRDLLDRGRKMGSNLPSPIL
SGEHRHLRVAESYMQLRMAGSNQELLNLVSEDIELQSSRDGKFVGKQQFQ
GYLTKVKPTGTWQNATWNNAVDRAEILGNVKILLINVGVVAHMGFDRSGK
INRIYVGTRSRSPK*
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spliced messenger RNA

>Gchil7544.t1 ID=Gchil7544.t1|Name=Gchil7544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000007_pilon:1813553..1814047+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGAATATGCACCGGAGCGTCAAGCGCAAGCAATTGCGACACTGA
TAAGCCGACCAAACCCATAGTCATCACCGCGGTCGATGCTATCCGCGATC
TACTGGACCGCGGAAGAAAGATGGGCAGCAACCTTCCCTCTCCCATCTTA
TCAGGCGAACATCGCCATCTGCGGGTTGCAGAGAGCTACATGCAGTTACG
CATGGCTGGTAGCAATCAGGAATTGCTCAATCTAGTATCCGAGGACATCG
AGTTACAATCTTCCCGAGATGGAAAATTTGTTGGTAAACAGCAGTTTCAG
GGTTACTTGACCAAGGTAAAACCGACTGGGACATGGCAAAACGCGACTTG
GAACAACGCTGTGGACAGAGCTGAAATATTAGGAAATGTGAAGATTCTTC
TGATTAACGTTGGTGTCGTGGCACATATGGGATTCGACAGATCCGGCAAA
ATCAATCGGATATACGTTGGCACTAGATCGAGATCTCCCAAGTAG
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protein sequence of Gchil7544.t1

>Gchil7544.t1 ID=Gchil7544.t1|Name=Gchil7544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MPRICTGASSASNCDTDKPTKPIVITAVDAIRDLLDRGRKMGSNLPSPIL
SGEHRHLRVAESYMQLRMAGSNQELLNLVSEDIELQSSRDGKFVGKQQFQ
GYLTKVKPTGTWQNATWNNAVDRAEILGNVKILLINVGVVAHMGFDRSGK
INRIYVGTRSRSPK*
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mRNA from alignment at tig00000007_pilon:1813553..1814047+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7544.t1 ID=Gchil7544.t1|Name=Gchil7544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000007_pilon:1813553..1814047+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGAATATGCACCGGAGCGTCAAGCGCAAGCAATTGCGACACTGA
TAAGCCGACCAAACCCATAGTCATCACCGCGGTCGATGCTATCCGCGATC
TACTGGACCGCGGAAGAAAGATGGGCAGCAACCTTCCCTCTCCCATCTTA
TCAGGCGAACATCGCCATCTGCGGGTTGCAGAGAGCTACATGCAGTTACG
CATGGCTGGTAGCAATCAGGAATTGCTCAATCTAGTATCCGAGGACATCG
AGTTACAATCTTCCCGAGATGGAAAATTTGTTGGTAAACAGCAGTTTCAG
GGTTACTTGACCAAGGTAAAACCGACTGGGACATGGCAAAACGCGACTTG
GAACAACGCTGTGGACAGAGCTGAAATATTAGGAAATGTGAAGATTCTTC
TGATTAACGTTGGTGTCGTGGCACATATGGGATTCGACAGATCCGGCAAA
ATCAATCGGATATACGTTGGCACTAGATCGAGATCTCCCAAGTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:1813553..1814047+

>Gchil7544.t1 ID=Gchil7544.t1|Name=Gchil7544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000007_pilon:1813553..1814047+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGAATATGCACCGGAGCGTCAAGCGCAAGCAATTGCGACACTGA
TAAGCCGACCAAACCCATAGTCATCACCGCGGTCGATGCTATCCGCGATC
TACTGGACCGCGGAAGAAAGATGGGCAGCAACCTTCCCTCTCCCATCTTA
TCAGGCGAACATCGCCATCTGCGGGTTGCAGAGAGCTACATGCAGTTACG
CATGGCTGGTAGCAATCAGGAATTGCTCAATCTAGTATCCGAGGACATCG
AGTTACAATCTTCCCGAGATGGAAAATTTGTTGGTAAACAGCAGTTTCAG
GGTTACTTGACCAAGGTAAAACCGACTGGGACATGGCAAAACGCGACTTG
GAACAACGCTGTGGACAGAGCTGAAATATTAGGAAATGTGAAGATTCTTC
TGATTAACGTTGGTGTCGTGGCACATATGGGATTCGACAGATCCGGCAAA
ATCAATCGGATATACGTTGGCACTAGATCGAGATCTCCCAAGTAG
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