Gchil7531.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7531.t1
Unique Name	Gchil7531.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	191

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1783547..1784119 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10038474
PFAMs	Mt_ATP-synt_D
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02138
KEGG TC	3.A.2.1
KEGG Pathway	ko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG Module	M00158
GOs	GO:0000274,GO:0000276,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009651,GO:0009987,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022626,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0042788,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045263,GO:0045265,GO:0046034,GO:0046390,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0055086,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990904
Evalue	2.26e-10
EggNOG OGs	KOG3366@1\|root,KOG3366@2759\|Eukaryota,37NSN@33090\|Viridiplantae,3GAYN@35493\|Streptophyta,4JI66@91835\|fabids
Description	Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a ATP6 static relative to the rotary elements
COG category	C
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7531	Gchil7531	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1783547..1784119 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7531.t1.stop1	Gchil7531.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1783547..1783549 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7531.t1.CDS1	Gchil7531.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1783547..1784119 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7531.t1.exon1	Gchil7531.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1783547..1784119 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7531.t1.start1	Gchil7531.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1784117..1784119 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7531.t1	Gchil7531.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1783547..1784119 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1783547..1784119-
coding sequence from alignment at tig00000007_pilon:1783547..1784119-

mRNA sequence

>Gchil7531.t1 ID=Gchil7531.t1|Name=Gchil7531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=191bp
MFCALLARGALRARPCITHNVRRSLAAAVTSENEMEQFDPTKLFQEFSDS
SVRSELSKIRDVEAELLQAISVKDAPIEWEQWKKEINYPGLVDELKSAYE
AVPAPDVEDARKKADEQVTATFKPIIEELSALAQEAEAEAEELEKQCEEI
AFLKDNFSEMPIDDFLEKFPTVKKSLEDDISNNKWFLRES*

spliced messenger RNA

>Gchil7531.t1 ID=Gchil7531.t1|Name=Gchil7531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000007_pilon:1783547..1784119- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTGTGCACTGCTCGCCCGCGGAGCACTTCGTGCTCGTCCTTGCAT
CACCCATAACGTTCGCCGCTCTCTCGCAGCTGCTGTCACTTCGGAGAACG
AAATGGAGCAATTTGATCCCACGAAATTATTCCAAGAATTCTCTGATTCG
TCGGTTCGCAGTGAACTGTCGAAGATACGCGACGTTGAAGCAGAACTGTT
ACAGGCCATCAGCGTAAAAGACGCTCCCATTGAGTGGGAACAGTGGAAGA
AGGAAATTAATTATCCTGGTCTTGTTGACGAGCTCAAGTCTGCGTATGAG
GCCGTGCCAGCACCGGACGTGGAGGACGCGCGAAAAAAAGCGGATGAACA
AGTGACGGCTACCTTTAAACCAATCATCGAAGAGTTATCTGCCCTAGCAC
AAGAAGCCGAAGCTGAAGCAGAAGAATTAGAAAAGCAATGCGAAGAAATT
GCATTCCTTAAAGATAACTTTTCGGAAATGCCTATTGATGATTTCCTTGA
AAAGTTCCCCACCGTCAAGAAGAGCCTTGAAGACGATATTTCGAACAACA
AATGGTTCTTGCGTGAATCCTAA

protein sequence of Gchil7531.t1

>Gchil7531.t1 ID=Gchil7531.t1|Name=Gchil7531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=191bp
MFCALLARGALRARPCITHNVRRSLAAAVTSENEMEQFDPTKLFQEFSDS
SVRSELSKIRDVEAELLQAISVKDAPIEWEQWKKEINYPGLVDELKSAYE
AVPAPDVEDARKKADEQVTATFKPIIEELSALAQEAEAEAEELEKQCEEI
AFLKDNFSEMPIDDFLEKFPTVKKSLEDDISNNKWFLRES*

mRNA from alignment at tig00000007_pilon:1783547..1784119-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7531.t1 ID=Gchil7531.t1|Name=Gchil7531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000007_pilon:1783547..1784119- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTGTGCACTGCTCGCCCGCGGAGCACTTCGTGCTCGTCCTTGCAT
CACCCATAACGTTCGCCGCTCTCTCGCAGCTGCTGTCACTTCGGAGAACG
AAATGGAGCAATTTGATCCCACGAAATTATTCCAAGAATTCTCTGATTCG
TCGGTTCGCAGTGAACTGTCGAAGATACGCGACGTTGAAGCAGAACTGTT
ACAGGCCATCAGCGTAAAAGACGCTCCCATTGAGTGGGAACAGTGGAAGA
AGGAAATTAATTATCCTGGTCTTGTTGACGAGCTCAAGTCTGCGTATGAG
GCCGTGCCAGCACCGGACGTGGAGGACGCGCGAAAAAAAGCGGATGAACA
AGTGACGGCTACCTTTAAACCAATCATCGAAGAGTTATCTGCCCTAGCAC
AAGAAGCCGAAGCTGAAGCAGAAGAATTAGAAAAGCAATGCGAAGAAATT
GCATTCCTTAAAGATAACTTTTCGGAAATGCCTATTGATGATTTCCTTGA
AAAGTTCCCCACCGTCAAGAAGAGCCTTGAAGACGATATTTCGAACAACA
AATGGTTCTTGCGTGAATCCTAA

Coding sequence (CDS) from alignment at tig00000007_pilon:1783547..1784119-

>Gchil7531.t1 ID=Gchil7531.t1|Name=Gchil7531.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000007_pilon:1783547..1784119- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTGTGCACTGCTCGCCCGCGGAGCACTTCGTGCTCGTCCTTGCAT
CACCCATAACGTTCGCCGCTCTCTCGCAGCTGCTGTCACTTCGGAGAACG
AAATGGAGCAATTTGATCCCACGAAATTATTCCAAGAATTCTCTGATTCG
TCGGTTCGCAGTGAACTGTCGAAGATACGCGACGTTGAAGCAGAACTGTT
ACAGGCCATCAGCGTAAAAGACGCTCCCATTGAGTGGGAACAGTGGAAGA
AGGAAATTAATTATCCTGGTCTTGTTGACGAGCTCAAGTCTGCGTATGAG
GCCGTGCCAGCACCGGACGTGGAGGACGCGCGAAAAAAAGCGGATGAACA
AGTGACGGCTACCTTTAAACCAATCATCGAAGAGTTATCTGCCCTAGCAC
AAGAAGCCGAAGCTGAAGCAGAAGAATTAGAAAAGCAATGCGAAGAAATT
GCATTCCTTAAAGATAACTTTTCGGAAATGCCTATTGATGATTTCCTTGA
AAAGTTCCCCACCGTCAAGAAGAGCCTTGAAGACGATATTTCGAACAACA
AATGGTTCTTGCGTGAATCCTAA