Gchil7528.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7528.t1
Unique NameGchil7528.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1771331..1772106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005843099.1
PFAMsHistone
Max annot lvl3041|Chlorophyta
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Evalue1.16e-82
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,37TRG@33090|Viridiplantae,34HJ1@3041|Chlorophyta
Descriptionhistone H3
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7528Gchil7528Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1771331..1772106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1Gchil7528.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1771331..1772106 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1.start1Gchil7528.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1771331..1771333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1.CDS1Gchil7528.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1771331..1771463 +
Gchil7528.t1.CDS2Gchil7528.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1771829..1772106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1.exon1Gchil7528.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1771331..1771463 +
Gchil7528.t1.exon2Gchil7528.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1771829..1772106 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1.intron1Gchil7528.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1771464..1771828 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7528.t1.stop1Gchil7528.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1772104..1772106 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7528.t1 ID=Gchil7528.t1|Name=Gchil7528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPITGGVKKPHRYRPGTVALR
EIRKFQKSTDLLIRKLPFQRLVREIAQDYKSDLRFQSSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
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spliced messenger RNA

>Gchil7528.t1 ID=Gchil7528.t1|Name=Gchil7528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000007_pilon:1771331..1772106+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggcgcgtacgaagcagaccgcgcgtaagtccaccggaggaaaagcccc
gcgcaagcagctcgccacaaaggcagcgcgcaagtccgcgccgatcactg
gcggcgtaaagaaaccacatcgctacaggCCTGGAACCGTCGCGTTGCGT
GAAATTCGCAAGTTCCAGAAGAGTACCGATTTGCTTATTCGGAAGCTTCC
ATTCCAGCGCCTGGTGCGAGAAATCGCTCAGGACTACAAGTCCGACCTTC
GCTTCCAGAGTTCTGCCGTTCTCGCGCTCCAAGAAGCCGCCGAAGCATAC
CTCGTCGGTCTCTTTGAAGATACGAATCTTTGTGCTATCCACGCCAAGCG
AGTGACAATCATGCCCAAAGACATTCAACTCGCTCGTCGCATCAGGGGCG
AAAGGGCCTAA
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protein sequence of Gchil7528.t1

>Gchil7528.t1 ID=Gchil7528.t1|Name=Gchil7528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPITGGVKKPHRYRPGTVALR
EIRKFQKSTDLLIRKLPFQRLVREIAQDYKSDLRFQSSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
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mRNA from alignment at tig00000007_pilon:1771331..1772106+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7528.t1 ID=Gchil7528.t1|Name=Gchil7528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=776bp|location=Sequence derived from alignment at tig00000007_pilon:1771331..1772106+ (Gracilaria chilensis NLEC103_M9 male)
atggcgcgtacgaagcagaccgcgcgtaagtccaccggaggaaaagcccc
gcgcaagcagctcgccacaaaggcagcgcgcaagtccgcgccgatcactg
gcggcgtaaagaaaccacatcgctacaggCCTGGTACGTTGCAGAAGCAC
TCCAACTTCTACATTTCATGGGGCGCAAGCGTATGCGCGTCGCTCCATTT
TTTCACTATCATAGTCAGAACACGAATTCTTCCTACTCAGCAACATGGGT
AGTACCTTGCTCATACTCAGCTAGCGGCCAAAGTGTTCGATTCCCAACAT
CCATGCGCCATCTTCATCCGAAGTGAAAACGAGCACACCGCATGCAAAGT
CGTGCATTCTGCCCGCTGTCGTGTCGGCTTCGCCATTCCTCGTCGAAAGC
GCTACGCTGTTGCCCCATGAGCGATCGTTCCGCGACCTTTCTCTTCATGA
CACTAACAGTTGCTTCCATTTCGCACTTGATTTTTTGAATCCGAACAGGA
ACCGTCGCGTTGCGTGAAATTCGCAAGTTCCAGAAGAGTACCGATTTGCT
TATTCGGAAGCTTCCATTCCAGCGCCTGGTGCGAGAAATCGCTCAGGACT
ACAAGTCCGACCTTCGCTTCCAGAGTTCTGCCGTTCTCGCGCTCCAAGAA
GCCGCCGAAGCATACCTCGTCGGTCTCTTTGAAGATACGAATCTTTGTGC
TATCCACGCCAAGCGAGTGACAATCATGCCCAAAGACATTCAACTCGCTC
GTCGCATCAGGGGCGAAAGGGCCTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1771331..1772106+

>Gchil7528.t1 ID=Gchil7528.t1|Name=Gchil7528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000007_pilon:1771331..1772106+ (Gracilaria chilensis NLEC103_M9 male)
atggcgcgtacgaagcagaccgcgcgtaagtccaccggaggaaaagcccc
gcgcaagcagctcgccacaaaggcagcgcgcaagtccgcgccgatcactg
gcggcgtaaagaaaccacatcgctacaggCCTGGAACCGTCGCGTTGCGT
GAAATTCGCAAGTTCCAGAAGAGTACCGATTTGCTTATTCGGAAGCTTCC
ATTCCAGCGCCTGGTGCGAGAAATCGCTCAGGACTACAAGTCCGACCTTC
GCTTCCAGAGTTCTGCCGTTCTCGCGCTCCAAGAAGCCGCCGAAGCATAC
CTCGTCGGTCTCTTTGAAGATACGAATCTTTGTGCTATCCACGCCAAGCG
AGTGACAATCATGCCCAAAGACATTCAACTCGCTCGTCGCATCAGGGGCG
AAAGGGCCTAA
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