Gchil7526.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7526.t1
Unique NameGchil7526.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1763436..1764122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1229172.JQFA01000004_gene379
PFAMsDUF924
Max annot lvl1117|Cyanobacteria
Evalue2.93e-39
EggNOG OGsCOG3803@1|root,COG3803@2|Bacteria,1G55K@1117|Cyanobacteria,1HAXI@1150|Oscillatoriales
DescriptionPFAM Bacterial protein of
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7526Gchil7526Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1763436..1764122 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7526.t1.start1Gchil7526.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1763436..1763438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7526.t1.CDS1Gchil7526.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1763436..1764122 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7526.t1.exon1Gchil7526.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1763436..1764122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7526.t1.stop1Gchil7526.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1764120..1764122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7526.t1Gchil7526.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1763436..1764122 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7526.t1 ID=Gchil7526.t1|Name=Gchil7526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=229bp
MTSTDSRGTERSEKEIIANVLKYWFGDDTFPPYENYKNQVDLWYGSSEQI
DADIRQRFGRETDDAISGKLDHFIGNTNRDYKSNLALVVMLDQFPRNIYR
GSEKAFAGDAKARAVVQHLLDTQEWDGLKNHFSPVARMSFLLPLMHQESL
DGQVKCVELIQSMIEECKSAGKQAEETVELLQKSLQFAQLHREIIEQFGR
FPYRNKALSRPSTPEEERYLIDGPSFGQ*
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spliced messenger RNA

>Gchil7526.t1 ID=Gchil7526.t1|Name=Gchil7526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000007_pilon:1763436..1764122+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGCACAGACTCTAGGGGAACGGAGCGGAGTGAAAAAGAAATAAT
CGCGAACGTGCTGAAGTATTGGTTTGGAGATGATACCTTCCCACCGTATG
AAAATTATAAGAACCAGGTGGATCTCTGGTATGGGTCCTCAGAACAAATT
GATGCCGATATTCGACAACGTTTTGGCCGTGAAACAGATGACGCGATTTC
CGGGAAACTGGATCACTTCATCGGAAACACAAATCGCGATTATAAATCGA
ACCTTGCACTTGTCGTCATGCTTGACCAGTTTCCAAGAAACATTTACAGA
GGCTCTGAGAAAGCATTCGCAGGAGATGCAAAAGCAAGAGCTGTCGTCCA
ACATCTGCTTGACACTCAGGAATGGGATGGCCTGAAGAACCATTTTTCTC
CGGTTGCTCGAATGTCTTTCCTCCTTCCGTTGATGCATCAAGAATCTCTT
GATGGTCAGGTCAAATGTGTCGAGCTCATCCAAAGCATGATAGAAGAGTG
TAAGTCGGCAGGAAAGCAGGCTGAAGAAACCGTGGAGCTCTTACAAAAAT
CACTTCAATTCGCTCAATTACATCGCGAGATCATTGAACAGTTCGGAAGA
TTCCCCTATAGAAACAAAGCCCTTTCCCGCCCATCGACACCTGAGGAGGA
ACGGTATCTAATTGATGGCCCAAGCTTTGGTCAGTGA
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protein sequence of Gchil7526.t1

>Gchil7526.t1 ID=Gchil7526.t1|Name=Gchil7526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=229bp
MTSTDSRGTERSEKEIIANVLKYWFGDDTFPPYENYKNQVDLWYGSSEQI
DADIRQRFGRETDDAISGKLDHFIGNTNRDYKSNLALVVMLDQFPRNIYR
GSEKAFAGDAKARAVVQHLLDTQEWDGLKNHFSPVARMSFLLPLMHQESL
DGQVKCVELIQSMIEECKSAGKQAEETVELLQKSLQFAQLHREIIEQFGR
FPYRNKALSRPSTPEEERYLIDGPSFGQ*
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mRNA from alignment at tig00000007_pilon:1763436..1764122+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7526.t1 ID=Gchil7526.t1|Name=Gchil7526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000007_pilon:1763436..1764122+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAGCACAGACTCTAGGGGAACGGAGCGGAGTGAAAAAGAAATAAT
CGCGAACGTGCTGAAGTATTGGTTTGGAGATGATACCTTCCCACCGTATG
AAAATTATAAGAACCAGGTGGATCTCTGGTATGGGTCCTCAGAACAAATT
GATGCCGATATTCGACAACGTTTTGGCCGTGAAACAGATGACGCGATTTC
CGGGAAACTGGATCACTTCATCGGAAACACAAATCGCGATTATAAATCGA
ACCTTGCACTTGTCGTCATGCTTGACCAGTTTCCAAGAAACATTTACAGA
GGCTCTGAGAAAGCATTCGCAGGAGATGCAAAAGCAAGAGCTGTCGTCCA
ACATCTGCTTGACACTCAGGAATGGGATGGCCTGAAGAACCATTTTTCTC
CGGTTGCTCGAATGTCTTTCCTCCTTCCGTTGATGCATCAAGAATCTCTT
GATGGTCAGGTCAAATGTGTCGAGCTCATCCAAAGCATGATAGAAGAGTG
TAAGTCGGCAGGAAAGCAGGCTGAAGAAACCGTGGAGCTCTTACAAAAAT
CACTTCAATTCGCTCAATTACATCGCGAGATCATTGAACAGTTCGGAAGA
TTCCCCTATAGAAACAAAGCCCTTTCCCGCCCATCGACACCTGAGGAGGA
ACGGTATCTAATTGATGGCCCAAGCTTTGGTCAGTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1763436..1764122+

>Gchil7526.t1 ID=Gchil7526.t1|Name=Gchil7526.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000007_pilon:1763436..1764122+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGAGCACAGACTCTAGGGGAACGGAGCGGAGTGAAAAAGAAATAAT
CGCGAACGTGCTGAAGTATTGGTTTGGAGATGATACCTTCCCACCGTATG
AAAATTATAAGAACCAGGTGGATCTCTGGTATGGGTCCTCAGAACAAATT
GATGCCGATATTCGACAACGTTTTGGCCGTGAAACAGATGACGCGATTTC
CGGGAAACTGGATCACTTCATCGGAAACACAAATCGCGATTATAAATCGA
ACCTTGCACTTGTCGTCATGCTTGACCAGTTTCCAAGAAACATTTACAGA
GGCTCTGAGAAAGCATTCGCAGGAGATGCAAAAGCAAGAGCTGTCGTCCA
ACATCTGCTTGACACTCAGGAATGGGATGGCCTGAAGAACCATTTTTCTC
CGGTTGCTCGAATGTCTTTCCTCCTTCCGTTGATGCATCAAGAATCTCTT
GATGGTCAGGTCAAATGTGTCGAGCTCATCCAAAGCATGATAGAAGAGTG
TAAGTCGGCAGGAAAGCAGGCTGAAGAAACCGTGGAGCTCTTACAAAAAT
CACTTCAATTCGCTCAATTACATCGCGAGATCATTGAACAGTTCGGAAGA
TTCCCCTATAGAAACAAAGCCCTTTCCCGCCCATCGACACCTGAGGAGGA
ACGGTATCTAATTGATGGCCCAAGCTTTGGTCAGTGA
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