Gchil7519.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7519.t1
Unique NameGchil7519.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1700271..1700972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000037082
Preferred nameHDDC3
PFAMsHD_4
Max annot lvl33208|Metazoa
KEGG rclassRC00078
KEGG koko:K21138
KEGG ReactionR00336
KEGG Pathwayko00230,map00230
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006152,GO:0006163,GO:0006195,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008893,GO:0009056,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009150,GO:0009154,GO:0009164,GO:0009166,GO:0009259,GO:0009261,GO:0009605,GO:0009987,GO:0009991,GO:0015969,GO:0015971,GO:0016787,GO:0016788,GO:0016794,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0031667,GO:0033865,GO:0033869,GO:0033875,GO:0034031,GO:0034032,GO:0034034,GO:0034035,GO:0034037,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042454,GO:0042578,GO:0042594,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0046128,GO:0046130,GO:0046434,GO:0046483,GO:0046700,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
Evalue7.01e-62
EggNOG OGsCOG0317@1|root,KOG1157@2759|Eukaryota,39Y6C@33154|Opisthokonta,3BNBB@33208|Metazoa,3CWZI@33213|Bilateria,4816Y@7711|Chordata,497H9@7742|Vertebrata,49QKW@7898|Actinopterygii
EC3.1.7.2
DescriptionHD domain containing 3
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7519Gchil7519Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1700271..1700972 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7519.t1.stop1Gchil7519.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1700271..1700273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7519.t1.CDS1Gchil7519.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1700271..1700972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7519.t1.exon1Gchil7519.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1700271..1700972 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7519.t1.start1Gchil7519.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1700970..1700972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7519.t1Gchil7519.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1700271..1700972 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7519.t1 ID=Gchil7519.t1|Name=Gchil7519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MNDTKTFVSILAALASGVFTGFFLRKAFWGLSENTEGAKSKKEEDGEDSA
LCVALLIKAMDYSTEKHRDQKRKNSKKHPYICHPVRVAKRLLVDGGVSDI
STLVAALLHDTVEDTDATLEEIDELFGAHIAQLVDEVSDDKSLPKEIRKR
NQIEHAPHISPEAKAIKLADKLDNLTELVDIAPIGWDEERVVKYFDWAEA
VVQGLRGVNSVLERQLDEIFQQKDVAAKAAALR*
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spliced messenger RNA

>Gchil7519.t1 ID=Gchil7519.t1|Name=Gchil7519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000007_pilon:1700271..1700972- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATACGAAGACTTTCGTATCAATTCTTGCGGCACTGGCTAGTGG
TGTCTTCACTGGGTTCTTTTTGAGAAAGGCATTTTGGGGGCTATCAGAGA
ATACCGAAGGTGCTAAAAGTAAAAAGGAAGAAGATGGAGAGGACTCAGCA
TTGTGTGTAGCACTTCTCATAAAGGCAATGGATTACAGCACCGAAAAACA
CAGGGATCAAAAACGCAAGAACAGCAAGAAACATCCTTACATATGCCATC
CAGTTCGAGTCGCGAAGAGGTTGTTGGTGGATGGGGGTGTCAGCGATATT
TCGACTTTGGTGGCAGCTTTGCTACATGACACTGTCGAAGACACCGATGC
CACTCTGGAAGAGATCGATGAGCTTTTTGGAGCACACATAGCACAACTTG
TCGATGAGGTCTCTGACGACAAGTCGCTACCAAAAGAGATTCGAAAGCGA
AACCAGATAGAGCACGCCCCTCATATCTCGCCAGAAGCAAAGGCTATCAA
GCTCGCTGATAAGTTAGACAATCTAACCGAGTTGGTTGATATCGCACCTA
TTGGCTGGGATGAAGAGCGGGTGGTGAAGTACTTTGACTGGGCAGAGGCT
GTGGTACAGGGCCTGCGAGGAGTGAATTCGGTCTTGGAACGGCAACTAGA
CGAAATCTTCCAGCAAAAAGATGTAGCTGCGAAGGCAGCTGCATTGCGTT
GA
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protein sequence of Gchil7519.t1

>Gchil7519.t1 ID=Gchil7519.t1|Name=Gchil7519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MNDTKTFVSILAALASGVFTGFFLRKAFWGLSENTEGAKSKKEEDGEDSA
LCVALLIKAMDYSTEKHRDQKRKNSKKHPYICHPVRVAKRLLVDGGVSDI
STLVAALLHDTVEDTDATLEEIDELFGAHIAQLVDEVSDDKSLPKEIRKR
NQIEHAPHISPEAKAIKLADKLDNLTELVDIAPIGWDEERVVKYFDWAEA
VVQGLRGVNSVLERQLDEIFQQKDVAAKAAALR*
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mRNA from alignment at tig00000007_pilon:1700271..1700972-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7519.t1 ID=Gchil7519.t1|Name=Gchil7519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000007_pilon:1700271..1700972- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATACGAAGACTTTCGTATCAATTCTTGCGGCACTGGCTAGTGG
TGTCTTCACTGGGTTCTTTTTGAGAAAGGCATTTTGGGGGCTATCAGAGA
ATACCGAAGGTGCTAAAAGTAAAAAGGAAGAAGATGGAGAGGACTCAGCA
TTGTGTGTAGCACTTCTCATAAAGGCAATGGATTACAGCACCGAAAAACA
CAGGGATCAAAAACGCAAGAACAGCAAGAAACATCCTTACATATGCCATC
CAGTTCGAGTCGCGAAGAGGTTGTTGGTGGATGGGGGTGTCAGCGATATT
TCGACTTTGGTGGCAGCTTTGCTACATGACACTGTCGAAGACACCGATGC
CACTCTGGAAGAGATCGATGAGCTTTTTGGAGCACACATAGCACAACTTG
TCGATGAGGTCTCTGACGACAAGTCGCTACCAAAAGAGATTCGAAAGCGA
AACCAGATAGAGCACGCCCCTCATATCTCGCCAGAAGCAAAGGCTATCAA
GCTCGCTGATAAGTTAGACAATCTAACCGAGTTGGTTGATATCGCACCTA
TTGGCTGGGATGAAGAGCGGGTGGTGAAGTACTTTGACTGGGCAGAGGCT
GTGGTACAGGGCCTGCGAGGAGTGAATTCGGTCTTGGAACGGCAACTAGA
CGAAATCTTCCAGCAAAAAGATGTAGCTGCGAAGGCAGCTGCATTGCGTT
GA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1700271..1700972-

>Gchil7519.t1 ID=Gchil7519.t1|Name=Gchil7519.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000007_pilon:1700271..1700972- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATACGAAGACTTTCGTATCAATTCTTGCGGCACTGGCTAGTGG
TGTCTTCACTGGGTTCTTTTTGAGAAAGGCATTTTGGGGGCTATCAGAGA
ATACCGAAGGTGCTAAAAGTAAAAAGGAAGAAGATGGAGAGGACTCAGCA
TTGTGTGTAGCACTTCTCATAAAGGCAATGGATTACAGCACCGAAAAACA
CAGGGATCAAAAACGCAAGAACAGCAAGAAACATCCTTACATATGCCATC
CAGTTCGAGTCGCGAAGAGGTTGTTGGTGGATGGGGGTGTCAGCGATATT
TCGACTTTGGTGGCAGCTTTGCTACATGACACTGTCGAAGACACCGATGC
CACTCTGGAAGAGATCGATGAGCTTTTTGGAGCACACATAGCACAACTTG
TCGATGAGGTCTCTGACGACAAGTCGCTACCAAAAGAGATTCGAAAGCGA
AACCAGATAGAGCACGCCCCTCATATCTCGCCAGAAGCAAAGGCTATCAA
GCTCGCTGATAAGTTAGACAATCTAACCGAGTTGGTTGATATCGCACCTA
TTGGCTGGGATGAAGAGCGGGTGGTGAAGTACTTTGACTGGGCAGAGGCT
GTGGTACAGGGCCTGCGAGGAGTGAATTCGGTCTTGGAACGGCAACTAGA
CGAAATCTTCCAGCAAAAAGATGTAGCTGCGAAGGCAGCTGCATTGCGTT
GA
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