Gchil7518.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7518.t1
Unique NameGchil7518.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1699005..1700120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL010821-PA
Preferred nameRPLP0
PFAMsRibosomal_60s,Ribosomal_L10
Max annot lvl33208|Metazoa
KEGG koko:K02941
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007589,GO:0007595,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009719,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010269,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0019221,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0023052,GO:0030425,GO:0030879,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035690,GO:0035722,GO:0035770,GO:0036464,GO:0036477,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042995,GO:0043005,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046683,GO:0046700,GO:0046903,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050878,GO:0050896,GO:0051179,GO:0051234,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0052720,GO:0060255,GO:0065007,GO:0065008,GO:0070670,GO:0070671,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071345,GO:0071349,GO:0071353,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0097305,GO:0097306,GO:0097327,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1904400,GO:1904401,GO:1904587,GO:1904588,GO:1904627,GO:1904628,GO:1990904
Evalue1.52e-89
EggNOG OGsCOG0244@1|root,KOG0815@2759|Eukaryota,38BU8@33154|Opisthokonta,3BAZV@33208|Metazoa,3CZPS@33213|Bilateria,41WXE@6656|Arthropoda,3SJDT@50557|Insecta,452BD@7147|Diptera,45DAP@7148|Nematocera
DescriptionRibosomal protein P0 is the functional equivalent of E.coli protein L10
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7518Gchil7518Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1699005..1700120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1Gchil7518.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1699005..1700120 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1.start1Gchil7518.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1699005..1699007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1.CDS1Gchil7518.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1699005..1699195 +
Gchil7518.t1.CDS2Gchil7518.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1699325..1700120 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1.exon1Gchil7518.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1699005..1699195 +
Gchil7518.t1.exon2Gchil7518.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1699325..1700120 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1.intron1Gchil7518.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1699196..1699324 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7518.t1.stop1Gchil7518.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1700118..1700120 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7518.t1 ID=Gchil7518.t1|Name=Gchil7518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=329bp
MPALIQDETPDEEVTIKPKLLKKMAYVAHLQAAFDEYDQAFLVNADNVGS
KQMQEIRISTREDCLLVFGKNTQMRKAILEKAEENPDLNSLVDHLKGNVG
FVFTKGELKEVRDRIISNKVPAPARAGAIAQVGVTIPAGLTGMEPTQTTF
FQALNIPTKISRGQIEIMSNVELFKEGEKVSSSEVALLTKMKIKPFSYGL
QFKQVYDKGSLYSPDVLDITDDRLKQSLLAGIANIASISLGIGYPTRASV
PHSLMNGLKNLVAVSLATDYTIKAAEKIKAILDDPEALAAMAAAAVAPAA
GEEAAAAAEPEEEEEEEEEEEMDFDLFD*
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spliced messenger RNA

>Gchil7518.t1 ID=Gchil7518.t1|Name=Gchil7518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000007_pilon:1699005..1700120+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCTCTTATTCAAGATGAAACTCCCGATGAGGAGGTTACGATCAA
ACCGAAGCTGCTGAAGAAGATGGCTTACGTGGCACATCTTCAGGCAGCAT
TCGACGAATACGATCAGGCATTCCTCGTTAACGCGGACAATGTTGGCTCC
AAGCAAATGCAGGAGATCCGTATCAGTACGCGAGAGGACTGTCTTCTTGT
CTTCGGAAAGAACACTCAAATGAGGAAAGCCATTCTGGAGAAGGCTGAAG
AAAATCCGGACTTAAATTCATTGGTGGACCATTTGAAAGGCAATGTTGGG
TTCGTCTTCACCAAGGGCGAGTTAAAAGAAGTCAGGGACAGAATCATATC
GAACAAGGTTCCCGCACCAGCTCGAGCTGGTGCAATTGCGCAGGTTGGAG
TCACGATTCCTGCCGGCCTTACTGGTATGGAACCAACTCAAACCACCTTT
TTCCAGGCATTGAACATTCCGACAAAGATTAGTCGCGGTCAAATTGAAAT
CATGAGCAATGTCGAGCTGTTCAAGGAAGGCGAAAAAGTTTCGTCTTCCG
AGGTTGCGTTGCTCACGAAAATGAAAATTAAGCCTTTTTCGTACGGTCTA
CAGTTCAAGCAGGTCTACGATAAGGGAAGTCTCTATTCCCCAGACGTTCT
TGACATCACCGACGATCGACTGAAGCAATCCCTGTTGGCAGGAATCGCCA
ACATCGCATCGATTTCTCTGGGAATCGGTTACCCGACTAGAGCATCTGTC
CCTCATTCGCTAATGAATGGTCTAAAGAATCTCGTCGCAGTTTCGCTCGC
AACTGATTACACAATCAAGGCGGCCGAAAAGATCAAGGCCATTCTGGATG
ATCCCGAGGCTCTTGCAGCTATGGCTGCCGCCGCGGTCGCACCCGCTGCC
GGCGAGGAAGCTGCCGCTGCTGCGGAACCagaggaagaagaagaggagga
ggaagaggaggaaATGGACTTCGATCTTTTCGATTAA
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protein sequence of Gchil7518.t1

>Gchil7518.t1 ID=Gchil7518.t1|Name=Gchil7518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=329bp
MPALIQDETPDEEVTIKPKLLKKMAYVAHLQAAFDEYDQAFLVNADNVGS
KQMQEIRISTREDCLLVFGKNTQMRKAILEKAEENPDLNSLVDHLKGNVG
FVFTKGELKEVRDRIISNKVPAPARAGAIAQVGVTIPAGLTGMEPTQTTF
FQALNIPTKISRGQIEIMSNVELFKEGEKVSSSEVALLTKMKIKPFSYGL
QFKQVYDKGSLYSPDVLDITDDRLKQSLLAGIANIASISLGIGYPTRASV
PHSLMNGLKNLVAVSLATDYTIKAAEKIKAILDDPEALAAMAAAAVAPAA
GEEAAAAAEPEEEEEEEEEEEMDFDLFD*
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mRNA from alignment at tig00000007_pilon:1699005..1700120+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7518.t1 ID=Gchil7518.t1|Name=Gchil7518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000007_pilon:1699005..1700120+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGCTCTTATTCAAGATGAAACTCCCGATGAGGAGGTTACGATCAA
ACCGAAGCTGCTGAAGAAGATGGCTTACGTGGCACATCTTCAGGCAGCAT
TCGACGAATACGATCAGGCATTCCTCGTTAACGCGGACAATGTTGGCTCC
AAGCAAATGCAGGAGATCCGTATCAGTACGCGAGAGGACTGGTAAGTGTC
ACGGTTGTACAGCGTTCCATTGCACTTTGTGTTTACGTAGCACGCAAAAA
ATGCGCGTTTGATAGGATCACTAACATGGCCTAATTCCAATGCGCGATGA
ATACGTTTCTACGACATCAGTCTTCTTGTCTTCGGAAAGAACACTCAAAT
GAGGAAAGCCATTCTGGAGAAGGCTGAAGAAAATCCGGACTTAAATTCAT
TGGTGGACCATTTGAAAGGCAATGTTGGGTTCGTCTTCACCAAGGGCGAG
TTAAAAGAAGTCAGGGACAGAATCATATCGAACAAGGTTCCCGCACCAGC
TCGAGCTGGTGCAATTGCGCAGGTTGGAGTCACGATTCCTGCCGGCCTTA
CTGGTATGGAACCAACTCAAACCACCTTTTTCCAGGCATTGAACATTCCG
ACAAAGATTAGTCGCGGTCAAATTGAAATCATGAGCAATGTCGAGCTGTT
CAAGGAAGGCGAAAAAGTTTCGTCTTCCGAGGTTGCGTTGCTCACGAAAA
TGAAAATTAAGCCTTTTTCGTACGGTCTACAGTTCAAGCAGGTCTACGAT
AAGGGAAGTCTCTATTCCCCAGACGTTCTTGACATCACCGACGATCGACT
GAAGCAATCCCTGTTGGCAGGAATCGCCAACATCGCATCGATTTCTCTGG
GAATCGGTTACCCGACTAGAGCATCTGTCCCTCATTCGCTAATGAATGGT
CTAAAGAATCTCGTCGCAGTTTCGCTCGCAACTGATTACACAATCAAGGC
GGCCGAAAAGATCAAGGCCATTCTGGATGATCCCGAGGCTCTTGCAGCTA
TGGCTGCCGCCGCGGTCGCACCCGCTGCCGGCGAGGAAGCTGCCGCTGCT
GCGGAACCagaggaagaagaagaggaggaggaagaggaggaaATGGACTT
CGATCTTTTCGATTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1699005..1700120+

>Gchil7518.t1 ID=Gchil7518.t1|Name=Gchil7518.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000007_pilon:1699005..1700120+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGGCTCTTATTCAAGATGAAACTCCCGATGAGGAGGTTACGATCAA
ACCGAAGCTGCTGAAGAAGATGGCTTACGTGGCACATCTTCAGGCAGCAT
TCGACGAATACGATCAGGCATTCCTCGTTAACGCGGACAATGTTGGCTCC
AAGCAAATGCAGGAGATCCGTATCAGTACGCGAGAGGACTGTCTTCTTGT
CTTCGGAAAGAACACTCAAATGAGGAAAGCCATTCTGGAGAAGGCTGAAG
AAAATCCGGACTTAAATTCATTGGTGGACCATTTGAAAGGCAATGTTGGG
TTCGTCTTCACCAAGGGCGAGTTAAAAGAAGTCAGGGACAGAATCATATC
GAACAAGGTTCCCGCACCAGCTCGAGCTGGTGCAATTGCGCAGGTTGGAG
TCACGATTCCTGCCGGCCTTACTGGTATGGAACCAACTCAAACCACCTTT
TTCCAGGCATTGAACATTCCGACAAAGATTAGTCGCGGTCAAATTGAAAT
CATGAGCAATGTCGAGCTGTTCAAGGAAGGCGAAAAAGTTTCGTCTTCCG
AGGTTGCGTTGCTCACGAAAATGAAAATTAAGCCTTTTTCGTACGGTCTA
CAGTTCAAGCAGGTCTACGATAAGGGAAGTCTCTATTCCCCAGACGTTCT
TGACATCACCGACGATCGACTGAAGCAATCCCTGTTGGCAGGAATCGCCA
ACATCGCATCGATTTCTCTGGGAATCGGTTACCCGACTAGAGCATCTGTC
CCTCATTCGCTAATGAATGGTCTAAAGAATCTCGTCGCAGTTTCGCTCGC
AACTGATTACACAATCAAGGCGGCCGAAAAGATCAAGGCCATTCTGGATG
ATCCCGAGGCTCTTGCAGCTATGGCTGCCGCCGCGGTCGCACCCGCTGCC
GGCGAGGAAGCTGCCGCTGCTGCGGAACCagaggaagaagaagaggagga
ggaagaggaggaaATGGACTTCGATCTTTTCGATTAA
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