Gchil7491.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7491.t1
Unique Name	Gchil7491.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	601

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1498221..1500023 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3983.cassava4.1_001289m
PFAMs	LIM_bind
Max annot lvl	35493\|Streptophyta
GOs	GO:0000003,GO:0001666,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0006950,GO:0006974,GO:0006979,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009624,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009909,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0010243,GO:0010272,GO:0014070,GO:0022414,GO:0032501,GO:0032502,GO:0033554,GO:0035670,GO:0036293,GO:0042221,GO:0042493,GO:0043207,GO:0046677,GO:0046898,GO:0046982,GO:0046983,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048580,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051239,GO:0051704,GO:0051707,GO:0051716,GO:0060090,GO:0060992,GO:0061458,GO:0065007,GO:0070482,GO:0071216,GO:0071217,GO:0071496,GO:0090567,GO:0097159,GO:0097305,GO:0099402,GO:1901363,GO:1901654,GO:1901698,GO:1901700,GO:2000026,GO:2000241
Evalue	5.67e-12
EggNOG OGs	28MDJ@1\|root,2QTWZ@2759\|Eukaryota,37R80@33090\|Viridiplantae,3G99F@35493\|Streptophyta,4JESF@91835\|fabids
Description	transcriptional co-repressor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7491	Gchil7491	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1498221..1500023 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7491.t1.start1	Gchil7491.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1498221..1498223 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7491.t1.CDS1	Gchil7491.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1498221..1500023 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7491.t1.exon1	Gchil7491.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1498221..1500023 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7491.t1.stop1	Gchil7491.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1500021..1500023 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7491.t1	Gchil7491.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1498221..1500023 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1498221..1500023+
coding sequence from alignment at tig00000007_pilon:1498221..1500023+

mRNA sequence

>Gchil7491.t1 ID=Gchil7491.t1|Name=Gchil7491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=601bp
MVRRPGPHVTMLLKLNQQLHAATPRHALLKFWKPLFAAHFAPNAAFHIDL
KSADAQNLCSFKLPLQLMPNLWKSKYEAGMISERFLLDNPIEHAYSDDST
VVDCPSTLIISNYPQSVVLTDGHLRVWFNPAHKIFRWEFSARAHQELFTP
TAFNPPAPPHPHCTEYGVPKNLLELMLVAEAINRLSDKIDNEVNQIVASN
TPAAHSVPHPATSPIGPNSAAPNAANAPSSTPSMSPLDPCALATEITSNE
QSTGNAYRAMLSQFGGSQALSVDPALSAKQMQIPSPSSAIMPSTLTPNNR
TDAARSLLSQVISPEEATANAINNALSWRNDQSQPLHTSEMLTNILEETF
RSSLAPDNENMRQRIQRQTLAPTDHLTGQIAELGDAQDGRQSSSAIGAAA
AAAASGQGGWGVDLSSSAKQSFGDALDAQLALQASTLNASLNLAGITGQK
ATPMRHAGNPGLSLFQSQVGALDGRKSSTNRGNRAAANMRATGNTLYREF
SDVELLKRMSVKSKQEQQADVRSNGAMGINGSAVFGLTSGSQGSYSHLSG
ELVSKLVKDESSMVGGHGSTASITGKKSRRSSVADGREKRQKSARGGNTV
*

spliced messenger RNA

>Gchil7491.t1 ID=Gchil7491.t1|Name=Gchil7491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000007_pilon:1498221..1500023+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGCAGGCCCGGCCCCCACGTCACCATGCTGCTCAAGCTCAATCA
GCAACTTCACGCCGCTACCCCTCGTCACGCCCTTCTCAAGTTCTGGAAGC
CCCTTTTCGCCGCCCACTTCGCCCCCAACGCCGCCTTTCACATCGACCTC
AAGTCCGCCGACGCCCAAAACTTGTGCTCCTTCAAACTGCCGCTTCAGCT
CATGCCTAATCTGTGGAAATCAAAATACGAAGCCGGTATGATCTCGGAGC
GCTTTTTGCTCGATAACCCCATAGAGCATGCCTACTCGGACGACTCAACT
GTCGTCGATTGCCCTAGCACTCTCATCATTTCCAATTACCCGCAAAGCGT
CGTGCTCACCGACGGTCACCTGCGCGTGTGGTTCAACCCTGCCCACAAGA
TCTTCCGTTGGGAATTTTCCGCGCGAGCACATCAGGAGCTATTCACTCCC
ACCGCCTTCAATCCGCCAGCGCCGCCCCACCCACACTGCACCGAGTATGG
CGTTCCGAAAAACCTCTTGGAGCTCATGCTTGTTGCTGAGGCTATAAACC
GGCTCAGCGATAAGATCGATAATGAGGTCAATCAAATCGTCGCCTCTAAT
ACCCCCGCCGCTCATTCTGTTCCCCATCCCGCAACTTCGCCCATTGGCCC
CAACTCCGCTGCACCCAATGCCGCAAACGCACCCTCGAGCACGCCTTCCA
TGTCTCCTCTTGACCCGTGTGCCTTAGCCACGGAAATCACCTCAAACGAG
CAATCTACCGGCAACGCCTATCGCGCCATGTTATCGCAATTTGGCGGCTC
TCAAGCCCTTTCTGTTGACCCCGCGCTTTCTGCCAAACAAATGCAAATCC
CTTCTCCATCTTCTGCCATCATGCCATCCACGCTTACACCTAACAACCGA
ACTGATGCCGCACGCTCTCTTCTTTCACAAGTCATCAGCCCTGAAGAAGC
CACTGCTAACGCGATCAACAATGCCTTGTCCTGGCGAAATGACCAATCAC
AACCCCTTCACACTTCTGAGATGCTGACAAACATATTGGAAGAAACTTTC
CGATCTTCCCTGGCACCCGACAACGAGAATATGAGGCAGCGAATACAAAG
ACAAACTCTCGCGCCGACTGACCATCTAACTGGACAAATCGCGGAGCTGG
GCGACGCTCAGGACGGAAGACAGTCCTCATCGGCGATTGGAGCAGCCGCC
GCCGCTGCTGCTTCGGGACAAGGGGGTTGGGGGGTTGATCTTTCATCGTC
TGCAAAACAGTCTTTCGGTGACGCACTTGATGCGCAACTTGCTCTTCAGG
CAAGCACGTTAAACGCTTCTTTGAATCTCGCTGGCATCACAGGACAGAAG
GCAACGCCTATGCGTCACGCGGGGAACCCAGGACTGAGCTTGTTTCAATC
TCAGGTTGGGGCTCTGGACGGCCGCAAGTCTTCGACAAATCGGGGTAACA
GAGCGGCTGCGAATATGAGGGCTACGGGAAATACGTTGTACAGGGAGTTT
TCTGACGTGGAGTTGTTGAAAAGGATGAGTGTGAAGTCTAAACAGGAGCA
GCAAGCGGATGTACGGTCTAACGGGGCAATGGGGATCAACGGATCTGCAG
TTTTTGGGCTAACGTCGGGGTCGCAGGGCTCCTATAGCCATTTGTCTGGG
GAGTTGGTCAGTAAGCTGGTGAAAGATGAAAGCAGCATGGTGGGGGGACA
TGGCAGTACTGCGAGTATCACTGGCAAGAAGTCTCGACGGTCGTCGGTTG
CGGACGGTCGGGAAAAGCGCCAAAAGTCTGCACGGGGCGGTAATACTGTC
TAG

protein sequence of Gchil7491.t1

>Gchil7491.t1 ID=Gchil7491.t1|Name=Gchil7491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=601bp
MVRRPGPHVTMLLKLNQQLHAATPRHALLKFWKPLFAAHFAPNAAFHIDL
KSADAQNLCSFKLPLQLMPNLWKSKYEAGMISERFLLDNPIEHAYSDDST
VVDCPSTLIISNYPQSVVLTDGHLRVWFNPAHKIFRWEFSARAHQELFTP
TAFNPPAPPHPHCTEYGVPKNLLELMLVAEAINRLSDKIDNEVNQIVASN
TPAAHSVPHPATSPIGPNSAAPNAANAPSSTPSMSPLDPCALATEITSNE
QSTGNAYRAMLSQFGGSQALSVDPALSAKQMQIPSPSSAIMPSTLTPNNR
TDAARSLLSQVISPEEATANAINNALSWRNDQSQPLHTSEMLTNILEETF
RSSLAPDNENMRQRIQRQTLAPTDHLTGQIAELGDAQDGRQSSSAIGAAA
AAAASGQGGWGVDLSSSAKQSFGDALDAQLALQASTLNASLNLAGITGQK
ATPMRHAGNPGLSLFQSQVGALDGRKSSTNRGNRAAANMRATGNTLYREF
SDVELLKRMSVKSKQEQQADVRSNGAMGINGSAVFGLTSGSQGSYSHLSG
ELVSKLVKDESSMVGGHGSTASITGKKSRRSSVADGREKRQKSARGGNTV
*

mRNA from alignment at tig00000007_pilon:1498221..1500023+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7491.t1 ID=Gchil7491.t1|Name=Gchil7491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1803bp|location=Sequence derived from alignment at tig00000007_pilon:1498221..1500023+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGCAGGCCCGGCCCCCACGTCACCATGCTGCTCAAGCTCAATCA
GCAACTTCACGCCGCTACCCCTCGTCACGCCCTTCTCAAGTTCTGGAAGC
CCCTTTTCGCCGCCCACTTCGCCCCCAACGCCGCCTTTCACATCGACCTC
AAGTCCGCCGACGCCCAAAACTTGTGCTCCTTCAAACTGCCGCTTCAGCT
CATGCCTAATCTGTGGAAATCAAAATACGAAGCCGGTATGATCTCGGAGC
GCTTTTTGCTCGATAACCCCATAGAGCATGCCTACTCGGACGACTCAACT
GTCGTCGATTGCCCTAGCACTCTCATCATTTCCAATTACCCGCAAAGCGT
CGTGCTCACCGACGGTCACCTGCGCGTGTGGTTCAACCCTGCCCACAAGA
TCTTCCGTTGGGAATTTTCCGCGCGAGCACATCAGGAGCTATTCACTCCC
ACCGCCTTCAATCCGCCAGCGCCGCCCCACCCACACTGCACCGAGTATGG
CGTTCCGAAAAACCTCTTGGAGCTCATGCTTGTTGCTGAGGCTATAAACC
GGCTCAGCGATAAGATCGATAATGAGGTCAATCAAATCGTCGCCTCTAAT
ACCCCCGCCGCTCATTCTGTTCCCCATCCCGCAACTTCGCCCATTGGCCC
CAACTCCGCTGCACCCAATGCCGCAAACGCACCCTCGAGCACGCCTTCCA
TGTCTCCTCTTGACCCGTGTGCCTTAGCCACGGAAATCACCTCAAACGAG
CAATCTACCGGCAACGCCTATCGCGCCATGTTATCGCAATTTGGCGGCTC
TCAAGCCCTTTCTGTTGACCCCGCGCTTTCTGCCAAACAAATGCAAATCC
CTTCTCCATCTTCTGCCATCATGCCATCCACGCTTACACCTAACAACCGA
ACTGATGCCGCACGCTCTCTTCTTTCACAAGTCATCAGCCCTGAAGAAGC
CACTGCTAACGCGATCAACAATGCCTTGTCCTGGCGAAATGACCAATCAC
AACCCCTTCACACTTCTGAGATGCTGACAAACATATTGGAAGAAACTTTC
CGATCTTCCCTGGCACCCGACAACGAGAATATGAGGCAGCGAATACAAAG
ACAAACTCTCGCGCCGACTGACCATCTAACTGGACAAATCGCGGAGCTGG
GCGACGCTCAGGACGGAAGACAGTCCTCATCGGCGATTGGAGCAGCCGCC
GCCGCTGCTGCTTCGGGACAAGGGGGTTGGGGGGTTGATCTTTCATCGTC
TGCAAAACAGTCTTTCGGTGACGCACTTGATGCGCAACTTGCTCTTCAGG
CAAGCACGTTAAACGCTTCTTTGAATCTCGCTGGCATCACAGGACAGAAG
GCAACGCCTATGCGTCACGCGGGGAACCCAGGACTGAGCTTGTTTCAATC
TCAGGTTGGGGCTCTGGACGGCCGCAAGTCTTCGACAAATCGGGGTAACA
GAGCGGCTGCGAATATGAGGGCTACGGGAAATACGTTGTACAGGGAGTTT
TCTGACGTGGAGTTGTTGAAAAGGATGAGTGTGAAGTCTAAACAGGAGCA
GCAAGCGGATGTACGGTCTAACGGGGCAATGGGGATCAACGGATCTGCAG
TTTTTGGGCTAACGTCGGGGTCGCAGGGCTCCTATAGCCATTTGTCTGGG
GAGTTGGTCAGTAAGCTGGTGAAAGATGAAAGCAGCATGGTGGGGGGACA
TGGCAGTACTGCGAGTATCACTGGCAAGAAGTCTCGACGGTCGTCGGTTG
CGGACGGTCGGGAAAAGCGCCAAAAGTCTGCACGGGGCGGTAATACTGTC
TAG

Coding sequence (CDS) from alignment at tig00000007_pilon:1498221..1500023+

>Gchil7491.t1 ID=Gchil7491.t1|Name=Gchil7491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1803bp|location=Sequence derived from alignment at tig00000007_pilon:1498221..1500023+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGCAGGCCCGGCCCCCACGTCACCATGCTGCTCAAGCTCAATCA
GCAACTTCACGCCGCTACCCCTCGTCACGCCCTTCTCAAGTTCTGGAAGC
CCCTTTTCGCCGCCCACTTCGCCCCCAACGCCGCCTTTCACATCGACCTC
AAGTCCGCCGACGCCCAAAACTTGTGCTCCTTCAAACTGCCGCTTCAGCT
CATGCCTAATCTGTGGAAATCAAAATACGAAGCCGGTATGATCTCGGAGC
GCTTTTTGCTCGATAACCCCATAGAGCATGCCTACTCGGACGACTCAACT
GTCGTCGATTGCCCTAGCACTCTCATCATTTCCAATTACCCGCAAAGCGT
CGTGCTCACCGACGGTCACCTGCGCGTGTGGTTCAACCCTGCCCACAAGA
TCTTCCGTTGGGAATTTTCCGCGCGAGCACATCAGGAGCTATTCACTCCC
ACCGCCTTCAATCCGCCAGCGCCGCCCCACCCACACTGCACCGAGTATGG
CGTTCCGAAAAACCTCTTGGAGCTCATGCTTGTTGCTGAGGCTATAAACC
GGCTCAGCGATAAGATCGATAATGAGGTCAATCAAATCGTCGCCTCTAAT
ACCCCCGCCGCTCATTCTGTTCCCCATCCCGCAACTTCGCCCATTGGCCC
CAACTCCGCTGCACCCAATGCCGCAAACGCACCCTCGAGCACGCCTTCCA
TGTCTCCTCTTGACCCGTGTGCCTTAGCCACGGAAATCACCTCAAACGAG
CAATCTACCGGCAACGCCTATCGCGCCATGTTATCGCAATTTGGCGGCTC
TCAAGCCCTTTCTGTTGACCCCGCGCTTTCTGCCAAACAAATGCAAATCC
CTTCTCCATCTTCTGCCATCATGCCATCCACGCTTACACCTAACAACCGA
ACTGATGCCGCACGCTCTCTTCTTTCACAAGTCATCAGCCCTGAAGAAGC
CACTGCTAACGCGATCAACAATGCCTTGTCCTGGCGAAATGACCAATCAC
AACCCCTTCACACTTCTGAGATGCTGACAAACATATTGGAAGAAACTTTC
CGATCTTCCCTGGCACCCGACAACGAGAATATGAGGCAGCGAATACAAAG
ACAAACTCTCGCGCCGACTGACCATCTAACTGGACAAATCGCGGAGCTGG
GCGACGCTCAGGACGGAAGACAGTCCTCATCGGCGATTGGAGCAGCCGCC
GCCGCTGCTGCTTCGGGACAAGGGGGTTGGGGGGTTGATCTTTCATCGTC
TGCAAAACAGTCTTTCGGTGACGCACTTGATGCGCAACTTGCTCTTCAGG
CAAGCACGTTAAACGCTTCTTTGAATCTCGCTGGCATCACAGGACAGAAG
GCAACGCCTATGCGTCACGCGGGGAACCCAGGACTGAGCTTGTTTCAATC
TCAGGTTGGGGCTCTGGACGGCCGCAAGTCTTCGACAAATCGGGGTAACA
GAGCGGCTGCGAATATGAGGGCTACGGGAAATACGTTGTACAGGGAGTTT
TCTGACGTGGAGTTGTTGAAAAGGATGAGTGTGAAGTCTAAACAGGAGCA
GCAAGCGGATGTACGGTCTAACGGGGCAATGGGGATCAACGGATCTGCAG
TTTTTGGGCTAACGTCGGGGTCGCAGGGCTCCTATAGCCATTTGTCTGGG
GAGTTGGTCAGTAAGCTGGTGAAAGATGAAAGCAGCATGGTGGGGGGACA
TGGCAGTACTGCGAGTATCACTGGCAAGAAGTCTCGACGGTCGTCGGTTG
CGGACGGTCGGGAAAAGCGCCAAAAGTCTGCACGGGGCGGTAATACTGTC
TAG