Gchil7488.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7488.t1
Unique Name	Gchil7488.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1490889..1491986 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	111780.Sta7437_1952
PFAMs	DUF1995
Max annot lvl	1117\|Cyanobacteria
Evalue	0.000677
EggNOG OGs	28IM3@1\|root,2Z8MN@2\|Bacteria,1G1IH@1117\|Cyanobacteria,3VI3G@52604\|Pleurocapsales
Description	Domain of unknown function (DUF1995)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7488	Gchil7488	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1490889..1491986 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7488.t1.start1	Gchil7488.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1490889..1490891 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7488.t1.CDS1	Gchil7488.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1490889..1491986 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7488.t1.exon1	Gchil7488.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1490889..1491986 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7488.t1.stop1	Gchil7488.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1491984..1491986 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7488.t1	Gchil7488.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1490889..1491986 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1490889..1491986+
coding sequence from alignment at tig00000007_pilon:1490889..1491986+

mRNA sequence

>Gchil7488.t1 ID=Gchil7488.t1|Name=Gchil7488.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MKPAFITAMVAHGPPSRRKRATNRAPPSHSKRQRVPLSELTRKYRANARD
VEESLLVDDSLVLDATSSHSPQPKPQLSHVSTFRSAVNYSRFPASWQETV
SQVTNAVTTAAADGHDRIRVDVKTPELLNSAGCVSTLSLQNLSQKSRRLA
RLVECACAILKQYLPNGTISDRQLAFFTPRKACLFFNTEDDAAAARQFVD
PSLQEFVEVLVLNQTTSYNLTSTVSVIIAPCNRQSNPSHIEAVERVHYSN
WNDDKVVVLLNPDLVALTRFPSFGDHPRQPSFLGDYLLSYYLDPVAYPTK
TATGAVLRCFPRKWEMYLLKVHNNMGFRLVAEQKNPPSPEKIRCEFSWRI
ENELHAERTHRFLIE*

spliced messenger RNA

>Gchil7488.t1 ID=Gchil7488.t1|Name=Gchil7488.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000007_pilon:1490889..1491986+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGCCTTCATCACTGCAATGGTTGCGCACGGGCCTCCCTCCCG
TCGCAAGCGCGCCACCAATCGCGCGCCACCCTCGCACTCAAAGCGTCAGC
GAGTCCCCCTTTCGGAACTCACGCGCAAATACCGCGCTAATGCGCGCGAC
GTCGAAGAGTCCCTCCTCGTCGATGATTCGCTTGTACTCGATGCAACCTC
TTCCCATTCGCCGCAACCCAAGCCCCAACTTTCTCATGTGTCCACCTTTC
GTTCTGCCGTCAACTATTCGCGTTTCCCTGCCTCGTGGCAGGAGACCGTT
TCGCAGGTCACCAATGCCGTCACCACTGCCGCCGCCGACGGCCACGATCG
AATTCGCGTTGACGTCAAAACGCCGGAGCTTTTGAACAGTGCTGGCTGTG
TCTCCACACTGTCTCTGCAGAACCTTTCGCAAAAGAGCAGGCGTCTTGCC
AGACTTGTGGAATGCGCCTGTGCTATTTTGAAACAGTATCTGCCGAACGG
CACAATCTCGGATAGGCAGCTGGCGTTTTTCACCCCTAGAAAGGCTTGTT
TGTTCTTCAACACAGAGGACGATGCGGCCGCTGCTCGTCAGTTTGTTGAC
CCAAGTCTCCAAGAGTTTGTCGAGGTCCTTGTTCTCAATCAAACCACGTC
TTACAATCTCACATCTACCGTTTCCGTCATCATAGCTCCATGCAACAGAC
AGTCGAACCCTTCCCACATTGAGGCTGTGGAACGCGTGCACTATTCGAAC
TGGAACGACGACAAGGTCGTTGTGTTGCTTAACCCTGACCTTGTTGCGCT
CACTCGTTTCCCGTCTTTTGGTGACCACCCTCGTCAGCCTTCTTTTTTGG
GCGACTATTTGCTCTCTTACTATCTGGACCCCGTAGCGTACCCAACAAAG
ACGGCCACGGGTGCTGTTCTTCGCTGCTTCCCGAGGAAGTGGGAGATGTA
CCTCCTCAAGGTTCACAACAACATGGGCTTTCGTTTGGTTGCCGAGCAGA
AGAATCCACCATCTCCCGAGAAGATAAGATGTGAGTTCTCGTGGCGAATT
GAGAATGAATTGCATGCTGAAAGAACACATCGTTTTCTAATCGAATAG

protein sequence of Gchil7488.t1

>Gchil7488.t1 ID=Gchil7488.t1|Name=Gchil7488.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MKPAFITAMVAHGPPSRRKRATNRAPPSHSKRQRVPLSELTRKYRANARD
VEESLLVDDSLVLDATSSHSPQPKPQLSHVSTFRSAVNYSRFPASWQETV
SQVTNAVTTAAADGHDRIRVDVKTPELLNSAGCVSTLSLQNLSQKSRRLA
RLVECACAILKQYLPNGTISDRQLAFFTPRKACLFFNTEDDAAAARQFVD
PSLQEFVEVLVLNQTTSYNLTSTVSVIIAPCNRQSNPSHIEAVERVHYSN
WNDDKVVVLLNPDLVALTRFPSFGDHPRQPSFLGDYLLSYYLDPVAYPTK
TATGAVLRCFPRKWEMYLLKVHNNMGFRLVAEQKNPPSPEKIRCEFSWRI
ENELHAERTHRFLIE*

mRNA from alignment at tig00000007_pilon:1490889..1491986+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7488.t1 ID=Gchil7488.t1|Name=Gchil7488.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000007_pilon:1490889..1491986+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCGCCTTCATCACTGCAATGGTTGCGCACGGGCCTCCCTCCCG
TCGCAAGCGCGCCACCAATCGCGCGCCACCCTCGCACTCAAAGCGTCAGC
GAGTCCCCCTTTCGGAACTCACGCGCAAATACCGCGCTAATGCGCGCGAC
GTCGAAGAGTCCCTCCTCGTCGATGATTCGCTTGTACTCGATGCAACCTC
TTCCCATTCGCCGCAACCCAAGCCCCAACTTTCTCATGTGTCCACCTTTC
GTTCTGCCGTCAACTATTCGCGTTTCCCTGCCTCGTGGCAGGAGACCGTT
TCGCAGGTCACCAATGCCGTCACCACTGCCGCCGCCGACGGCCACGATCG
AATTCGCGTTGACGTCAAAACGCCGGAGCTTTTGAACAGTGCTGGCTGTG
TCTCCACACTGTCTCTGCAGAACCTTTCGCAAAAGAGCAGGCGTCTTGCC
AGACTTGTGGAATGCGCCTGTGCTATTTTGAAACAGTATCTGCCGAACGG
CACAATCTCGGATAGGCAGCTGGCGTTTTTCACCCCTAGAAAGGCTTGTT
TGTTCTTCAACACAGAGGACGATGCGGCCGCTGCTCGTCAGTTTGTTGAC
CCAAGTCTCCAAGAGTTTGTCGAGGTCCTTGTTCTCAATCAAACCACGTC
TTACAATCTCACATCTACCGTTTCCGTCATCATAGCTCCATGCAACAGAC
AGTCGAACCCTTCCCACATTGAGGCTGTGGAACGCGTGCACTATTCGAAC
TGGAACGACGACAAGGTCGTTGTGTTGCTTAACCCTGACCTTGTTGCGCT
CACTCGTTTCCCGTCTTTTGGTGACCACCCTCGTCAGCCTTCTTTTTTGG
GCGACTATTTGCTCTCTTACTATCTGGACCCCGTAGCGTACCCAACAAAG
ACGGCCACGGGTGCTGTTCTTCGCTGCTTCCCGAGGAAGTGGGAGATGTA
CCTCCTCAAGGTTCACAACAACATGGGCTTTCGTTTGGTTGCCGAGCAGA
AGAATCCACCATCTCCCGAGAAGATAAGATGTGAGTTCTCGTGGCGAATT
GAGAATGAATTGCATGCTGAAAGAACACATCGTTTTCTAATCGAATAG

Coding sequence (CDS) from alignment at tig00000007_pilon:1490889..1491986+

>Gchil7488.t1 ID=Gchil7488.t1|Name=Gchil7488.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000007_pilon:1490889..1491986+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCGCCTTCATCACTGCAATGGTTGCGCACGGGCCTCCCTCCCG
TCGCAAGCGCGCCACCAATCGCGCGCCACCCTCGCACTCAAAGCGTCAGC
GAGTCCCCCTTTCGGAACTCACGCGCAAATACCGCGCTAATGCGCGCGAC
GTCGAAGAGTCCCTCCTCGTCGATGATTCGCTTGTACTCGATGCAACCTC
TTCCCATTCGCCGCAACCCAAGCCCCAACTTTCTCATGTGTCCACCTTTC
GTTCTGCCGTCAACTATTCGCGTTTCCCTGCCTCGTGGCAGGAGACCGTT
TCGCAGGTCACCAATGCCGTCACCACTGCCGCCGCCGACGGCCACGATCG
AATTCGCGTTGACGTCAAAACGCCGGAGCTTTTGAACAGTGCTGGCTGTG
TCTCCACACTGTCTCTGCAGAACCTTTCGCAAAAGAGCAGGCGTCTTGCC
AGACTTGTGGAATGCGCCTGTGCTATTTTGAAACAGTATCTGCCGAACGG
CACAATCTCGGATAGGCAGCTGGCGTTTTTCACCCCTAGAAAGGCTTGTT
TGTTCTTCAACACAGAGGACGATGCGGCCGCTGCTCGTCAGTTTGTTGAC
CCAAGTCTCCAAGAGTTTGTCGAGGTCCTTGTTCTCAATCAAACCACGTC
TTACAATCTCACATCTACCGTTTCCGTCATCATAGCTCCATGCAACAGAC
AGTCGAACCCTTCCCACATTGAGGCTGTGGAACGCGTGCACTATTCGAAC
TGGAACGACGACAAGGTCGTTGTGTTGCTTAACCCTGACCTTGTTGCGCT
CACTCGTTTCCCGTCTTTTGGTGACCACCCTCGTCAGCCTTCTTTTTTGG
GCGACTATTTGCTCTCTTACTATCTGGACCCCGTAGCGTACCCAACAAAG
ACGGCCACGGGTGCTGTTCTTCGCTGCTTCCCGAGGAAGTGGGAGATGTA
CCTCCTCAAGGTTCACAACAACATGGGCTTTCGTTTGGTTGCCGAGCAGA
AGAATCCACCATCTCCCGAGAAGATAAGATGTGAGTTCTCGTGGCGAATT
GAGAATGAATTGCATGCTGAAAGAACACATCGTTTTCTAATCGAATAG