Gchil7473.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7473.t1
Unique Name	Gchil7473.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1378130..1379101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	246197.MXAN_2331
Preferred name	cobB
PFAMs	SIR2
Max annot lvl	28221\|Deltaproteobacteria
KEGG ko	ko:K12410
Evalue	5.57e-62
EggNOG OGs	COG0846@1\|root,COG0846@2\|Bacteria,1MUK1@1224\|Proteobacteria,42QVM@68525\|delta/epsilon subdivisions,2WN3E@28221\|Deltaproteobacteria,2YTVS@29\|Myxococcales
Description	NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form
COG category	K
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7473	Gchil7473	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1378130..1379101 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7473.t1.start1	Gchil7473.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1378130..1378132 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7473.t1.CDS1	Gchil7473.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1378130..1379101 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7473.t1.exon1	Gchil7473.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1378130..1379101 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7473.t1.stop1	Gchil7473.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1379099..1379101 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7473.t1	Gchil7473.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1378130..1379101 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1378130..1379101+
coding sequence from alignment at tig00000007_pilon:1378130..1379101+

mRNA sequence

>Gchil7473.t1 ID=Gchil7473.t1|Name=Gchil7473.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=324bp
MARLKPQLPQGASFAKDAAIELLCDRLSRFRHITVLTGAGISTESGLSDY
RSPGKKKPPRPPIQHQEYVSSAAVRKRYWARSFVGFPILSNARPNLAHLS
LAALHDAAGSRFRWHTTQNVDGLLQAARIPSASLIELHGTIHKVVCRACG
AYELRKHFQTRLLSYNKEWSEELGSYKYRPDGDADLDDHLIHKFHVPHCD
ACGEEALMPALVFHGGQVPAEVANLAAHTVEQSDALFVVGSTVTPFSAYR
LVRLAKKNGAFLACVNYGATRADDIYDVKVEALVGNAMARFANLQLAGGF
KAPEGYEDVLRPQEDKLVRRLEL*

spliced messenger RNA

>Gchil7473.t1 ID=Gchil7473.t1|Name=Gchil7473.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000007_pilon:1378130..1379101+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGCCTCAAACCGCAGCTTCCACAGGGCGCGTCCTTTGCGAAAGA
TGCAGCCATCGAACTTCTCTGCGATCGTCTCTCCCGCTTTCGACACATCA
CCGTGCTCACAGGGGCGGGAATTTCCACCGAGTCGGGCTTGAGTGACTAC
CGTTCCCCAGGGAAGAAAAAGCCACCACGCCCACCCATCCAGCACCAAGA
ATATGTTTCAAGCGCCGCTGTACGCAAGCGCTACTGGGCTCGTTCTTTTG
TCGGTTTCCCTATATTGTCCAACGCGCGTCCAAACTTGGCACACCTCTCA
CTTGCAGCTCTCCATGATGCAGCTGGCTCGCGATTCCGTTGGCACACAAC
GCAGAATGTGGATGGCCTACTGCAGGCCGCGAGAATTCCGAGCGCGTCGC
TTATTGAATTGCATGGCACCATACACAAAGTCGTGTGCCGCGCATGTGGC
GCCTACGAGCTTCGTAAGCATTTCCAAACGCGCCTTTTGAGCTATAACAA
GGAATGGAGCGAAGAACTGGGCTCCTACAAATATAGGCCGGACGGCGACG
CAGATCTGGATGACCATCTGATTCATAAGTTCCACGTTCCGCATTGCGAC
GCATGCGGGGAAGAGGCTCTGATGCCCGCGCTTGTGTTTCACGGTGGACA
AGTACCAGCCGAAGTGGCGAATTTGGCGGCTCATACGGTCGAACAAAGTG
ATGCCCTGTTCGTCGTGGGTTCAACTGTGACGCCATTCTCAGCGTATCGA
CTCGTAAGACTCGCCAAAAAGAATGGAGCTTTCTTAGCGTGTGTGAATTA
TGGTGCAACGAGGGCGGATGACATATATGATGTCAAGGTCGAGGCCCTCG
TGGGCAATGCCATGGCGCGATTTGCAAATCTGCAGCTCGCGGGAGGTTTC
AAGGCTCCTGAGGGTTACGAAGACGTGCTGCGGCCACAGGAAGACAAACT
TGTTCGCAGACTAGAGTTGTAA

protein sequence of Gchil7473.t1

>Gchil7473.t1 ID=Gchil7473.t1|Name=Gchil7473.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=324bp
MARLKPQLPQGASFAKDAAIELLCDRLSRFRHITVLTGAGISTESGLSDY
RSPGKKKPPRPPIQHQEYVSSAAVRKRYWARSFVGFPILSNARPNLAHLS
LAALHDAAGSRFRWHTTQNVDGLLQAARIPSASLIELHGTIHKVVCRACG
AYELRKHFQTRLLSYNKEWSEELGSYKYRPDGDADLDDHLIHKFHVPHCD
ACGEEALMPALVFHGGQVPAEVANLAAHTVEQSDALFVVGSTVTPFSAYR
LVRLAKKNGAFLACVNYGATRADDIYDVKVEALVGNAMARFANLQLAGGF
KAPEGYEDVLRPQEDKLVRRLEL*

mRNA from alignment at tig00000007_pilon:1378130..1379101+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7473.t1 ID=Gchil7473.t1|Name=Gchil7473.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000007_pilon:1378130..1379101+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGCCTCAAACCGCAGCTTCCACAGGGCGCGTCCTTTGCGAAAGA
TGCAGCCATCGAACTTCTCTGCGATCGTCTCTCCCGCTTTCGACACATCA
CCGTGCTCACAGGGGCGGGAATTTCCACCGAGTCGGGCTTGAGTGACTAC
CGTTCCCCAGGGAAGAAAAAGCCACCACGCCCACCCATCCAGCACCAAGA
ATATGTTTCAAGCGCCGCTGTACGCAAGCGCTACTGGGCTCGTTCTTTTG
TCGGTTTCCCTATATTGTCCAACGCGCGTCCAAACTTGGCACACCTCTCA
CTTGCAGCTCTCCATGATGCAGCTGGCTCGCGATTCCGTTGGCACACAAC
GCAGAATGTGGATGGCCTACTGCAGGCCGCGAGAATTCCGAGCGCGTCGC
TTATTGAATTGCATGGCACCATACACAAAGTCGTGTGCCGCGCATGTGGC
GCCTACGAGCTTCGTAAGCATTTCCAAACGCGCCTTTTGAGCTATAACAA
GGAATGGAGCGAAGAACTGGGCTCCTACAAATATAGGCCGGACGGCGACG
CAGATCTGGATGACCATCTGATTCATAAGTTCCACGTTCCGCATTGCGAC
GCATGCGGGGAAGAGGCTCTGATGCCCGCGCTTGTGTTTCACGGTGGACA
AGTACCAGCCGAAGTGGCGAATTTGGCGGCTCATACGGTCGAACAAAGTG
ATGCCCTGTTCGTCGTGGGTTCAACTGTGACGCCATTCTCAGCGTATCGA
CTCGTAAGACTCGCCAAAAAGAATGGAGCTTTCTTAGCGTGTGTGAATTA
TGGTGCAACGAGGGCGGATGACATATATGATGTCAAGGTCGAGGCCCTCG
TGGGCAATGCCATGGCGCGATTTGCAAATCTGCAGCTCGCGGGAGGTTTC
AAGGCTCCTGAGGGTTACGAAGACGTGCTGCGGCCACAGGAAGACAAACT
TGTTCGCAGACTAGAGTTGTAA

Coding sequence (CDS) from alignment at tig00000007_pilon:1378130..1379101+

>Gchil7473.t1 ID=Gchil7473.t1|Name=Gchil7473.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000007_pilon:1378130..1379101+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGCCTCAAACCGCAGCTTCCACAGGGCGCGTCCTTTGCGAAAGA
TGCAGCCATCGAACTTCTCTGCGATCGTCTCTCCCGCTTTCGACACATCA
CCGTGCTCACAGGGGCGGGAATTTCCACCGAGTCGGGCTTGAGTGACTAC
CGTTCCCCAGGGAAGAAAAAGCCACCACGCCCACCCATCCAGCACCAAGA
ATATGTTTCAAGCGCCGCTGTACGCAAGCGCTACTGGGCTCGTTCTTTTG
TCGGTTTCCCTATATTGTCCAACGCGCGTCCAAACTTGGCACACCTCTCA
CTTGCAGCTCTCCATGATGCAGCTGGCTCGCGATTCCGTTGGCACACAAC
GCAGAATGTGGATGGCCTACTGCAGGCCGCGAGAATTCCGAGCGCGTCGC
TTATTGAATTGCATGGCACCATACACAAAGTCGTGTGCCGCGCATGTGGC
GCCTACGAGCTTCGTAAGCATTTCCAAACGCGCCTTTTGAGCTATAACAA
GGAATGGAGCGAAGAACTGGGCTCCTACAAATATAGGCCGGACGGCGACG
CAGATCTGGATGACCATCTGATTCATAAGTTCCACGTTCCGCATTGCGAC
GCATGCGGGGAAGAGGCTCTGATGCCCGCGCTTGTGTTTCACGGTGGACA
AGTACCAGCCGAAGTGGCGAATTTGGCGGCTCATACGGTCGAACAAAGTG
ATGCCCTGTTCGTCGTGGGTTCAACTGTGACGCCATTCTCAGCGTATCGA
CTCGTAAGACTCGCCAAAAAGAATGGAGCTTTCTTAGCGTGTGTGAATTA
TGGTGCAACGAGGGCGGATGACATATATGATGTCAAGGTCGAGGCCCTCG
TGGGCAATGCCATGGCGCGATTTGCAAATCTGCAGCTCGCGGGAGGTTTC
AAGGCTCCTGAGGGTTACGAAGACGTGCTGCGGCCACAGGAAGACAAACT
TGTTCGCAGACTAGAGTTGTAA