Gchil7463.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7463.t1
Unique NameGchil7463.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1352206..1353125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog195253.Syn6312_1295
PFAMsABC_tran
Max annot lvl1117|Cyanobacteria
KEGG koko:K16786
KEGG TC3.A.1.25,3.A.1.28,3.A.1.29,3.A.1.30,3.A.1.31,3.A.1.32,3.A.1.33,3.A.1.35
KEGG Pathwayko02010,map02010
KEGG ModuleM00582
Evalue5.57e-47
EggNOG OGsCOG1122@1|root,COG1122@2|Bacteria,1G0FZ@1117|Cyanobacteria,1GYC9@1129|Synechococcus
DescriptionABC-type cobalt transport system, ATPase component
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7463Gchil7463Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1352206..1353125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1Gchil7463.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1352206..1353125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1.stop1Gchil7463.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1352206..1352208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1.CDS1Gchil7463.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1352206..1352302 -
Gchil7463.t1.CDS2Gchil7463.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1352373..1352420 -
Gchil7463.t1.CDS3Gchil7463.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1352674..1353125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1.exon1Gchil7463.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1352206..1352302 -
Gchil7463.t1.exon2Gchil7463.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1352373..1352420 -
Gchil7463.t1.exon3Gchil7463.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1352674..1353125 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1.intron1Gchil7463.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1352303..1352372 -
Gchil7463.t1.intron2Gchil7463.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1352421..1352673 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7463.t1.start1Gchil7463.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1353123..1353125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7463.t1 ID=Gchil7463.t1|Name=Gchil7463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=199bp
MVLGHNGSGKSTLLQLLRGVLNPSTGSIHLEQPCAYVQQDPNIQIVMPTI
GMDIASSVRKDSTSQSADIRNAVLDSLTDVGLTPPEDFLRKSPYRLSGGQ
RQRAAVAAALAMEPRTILFDEVTANMDPFNKAELVSRVRRIITERNIAAI
WVTHLLDELEFADSIAIMTKGNIVAQGPRVAMMPLVFDMQDEVESSSP*
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spliced messenger RNA

>Gchil7463.t1 ID=Gchil7463.t1|Name=Gchil7463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000007_pilon:1352206..1353125- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTCGGGCACAATGGCAGTGGCAAAAGTACTCTTCTACAGCTTTT
GCGTGGAGTTCTGAATCCATCAACTGGCTCTATCCATCTTGAACAACCCT
GCGCGTACGTTCAACAAGATCCTAACATACAAATAGTAATGCCAACTATC
GGAATGGACATAGCTTCATCTGTACGGAAGGATTCAACGTCACAGTCGGC
AGATATTCGCAATGCTGTCTTAGACTCTCTGACCGATGTAGGATTGACCC
CTCCAGAAGACTTCTTGCGTAAGTCGCCTTACAGACTTAGCGGTGGGCAA
CGTCAGCGCGCTGCCGTCGCGGCTGCCTTAGCGATGGAGCCGAGGACTAT
TCTTTTTGACGAAGTCACCGCCAACATGGATCCTTTTAATAAGGCTGAAT
TGGTTTCCAGGGTTCGAAGAATCATTACTGAACGGAACATCGCAGCAATA
TGGGTCACTCATTTATTAGACGAACTGGAATTTGCCGATAGCATCGCAAT
AATGACCAAAGGAAATATAGTTGCGCAGGGACCAAGAGTGGCAATGATGC
CTCTTGTCTTTGACATGCAAGATGAAGTAGAAAGTTCATCGCCCTGA
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protein sequence of Gchil7463.t1

>Gchil7463.t1 ID=Gchil7463.t1|Name=Gchil7463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=199bp
MVLGHNGSGKSTLLQLLRGVLNPSTGSIHLEQPCAYVQQDPNIQIVMPTI
GMDIASSVRKDSTSQSADIRNAVLDSLTDVGLTPPEDFLRKSPYRLSGGQ
RQRAAVAAALAMEPRTILFDEVTANMDPFNKAELVSRVRRIITERNIAAI
WVTHLLDELEFADSIAIMTKGNIVAQGPRVAMMPLVFDMQDEVESSSP*
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mRNA from alignment at tig00000007_pilon:1352206..1353125-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7463.t1 ID=Gchil7463.t1|Name=Gchil7463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=920bp|location=Sequence derived from alignment at tig00000007_pilon:1352206..1353125- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCTCGGGCACAATGGCAGTGGCAAAAGTACTCTTCTACAGCTTTT
GCGTGGAGTTCTGAATCCATCAACTGGCTCTATCCATCTTGAACAACCCT
GCGCGTACGTTCAACAAGATCCTAACATACAAATAGTAATGCCAACTATC
GGAATGGACATAGCTTCATCTGTACGGAAGGATTCAACGTCACAGTCGGC
AGATATTCGCAATGCTGTCTTAGACTCTCTGACCGATGTAGGATTGACCC
CTCCAGAAGACTTCTTGCGTAAGTCGCCTTACAGACTTAGCGGTGGGCAA
CGTCAGCGCGCTGCCGTCGCGGCTGCCTTAGCGATGGAGCCGAGGACTAT
TCTTTTTGACGAAGTCACCGCCAACATGGATCCTTTTAATAAGGCTGAAT
TGGTTTCCAGGGTTCGAAGAATCATTACTGAACGGAACATCGCAGCAATA
TGGTACGTTACGCGTGCACAACTGATGCAAAAGAAGCATTTTTCGAAGGC
CGCCTAGAGAACTGTTGCTGTTGCAACAATCACCTTTGGATGTCGGCTCA
AAATGAATGCGAGATCAACCTTTGACAGCTTCGTGTTGCTGTACTTGTTT
TTGTCTTAACAGTTCAGTGTCTATTTACGCTTCACACATCCTCCAACATT
CTTGCAAAGATATATACTGACACGATAGAGTCTCGTTCTGATTTTGAAAT
GAAAGGGTCACTCATTTATTAGACGAACTGGAATTTGCCGATAGCATCGC
AATGTGAGTAGCATCTAATCCTATTTATCACACGGCATTCGTAACTGACT
TTTTCATCTTCTCGTTTCACTAGAATGACCAAAGGAAATATAGTTGCGCA
GGGACCAAGAGTGGCAATGATGCCTCTTGTCTTTGACATGCAAGATGAAG
TAGAAAGTTCATCGCCCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1352206..1353125-

>Gchil7463.t1 ID=Gchil7463.t1|Name=Gchil7463.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000007_pilon:1352206..1353125- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCTCGGGCACAATGGCAGTGGCAAAAGTACTCTTCTACAGCTTTT
GCGTGGAGTTCTGAATCCATCAACTGGCTCTATCCATCTTGAACAACCCT
GCGCGTACGTTCAACAAGATCCTAACATACAAATAGTAATGCCAACTATC
GGAATGGACATAGCTTCATCTGTACGGAAGGATTCAACGTCACAGTCGGC
AGATATTCGCAATGCTGTCTTAGACTCTCTGACCGATGTAGGATTGACCC
CTCCAGAAGACTTCTTGCGTAAGTCGCCTTACAGACTTAGCGGTGGGCAA
CGTCAGCGCGCTGCCGTCGCGGCTGCCTTAGCGATGGAGCCGAGGACTAT
TCTTTTTGACGAAGTCACCGCCAACATGGATCCTTTTAATAAGGCTGAAT
TGGTTTCCAGGGTTCGAAGAATCATTACTGAACGGAACATCGCAGCAATA
TGGGTCACTCATTTATTAGACGAACTGGAATTTGCCGATAGCATCGCAAT
AATGACCAAAGGAAATATAGTTGCGCAGGGACCAAGAGTGGCAATGATGC
CTCTTGTCTTTGACATGCAAGATGAAGTAGAAAGTTCATCGCCCTGA
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