Gchil7458.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7458.t1
Unique NameGchil7458.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1339705..1340598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog135651.CBN22282
Preferred nameRTN1
PFAMsReticulon
Max annot lvl33208|Metazoa
KEGG koko:K20721,ko:K20722
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0006996,GO:0007029,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030154,GO:0030176,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033267,GO:0042175,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044295,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045169,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0061024,GO:0071786,GO:0071840,GO:0090158,GO:0097458,GO:0098827,GO:0120025,GO:0120038,GO:0150034,GO:1990809
Evalue7.02e-11
EggNOG OGsKOG1792@1|root,KOG1792@2759|Eukaryota,39SV8@33154|Opisthokonta,3BIWW@33208|Metazoa,3CXIT@33213|Bilateria,40DZ4@6231|Nematoda,1KYVY@119089|Chromadorea,40XQZ@6236|Rhabditida
DescriptionReticulon
COG categoryU
BRITEko00000,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7458Gchil7458Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1339705..1340598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7458.t1.stop1Gchil7458.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1339705..1339707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7458.t1.CDS1Gchil7458.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1339705..1340598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7458.t1.exon1Gchil7458.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1339705..1340598 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7458.t1.start1Gchil7458.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1340596..1340598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7458.t1Gchil7458.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1339705..1340598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7458.t1 ID=Gchil7458.t1|Name=Gchil7458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MPLPPPRAPSFPSFIDQAPTHSTASKTPTTDSSINSSINDPSSLVNMDPS
TPVASLSTPSASEAIPAVPLPVAPSKSRIRAILLWRDPKITGIIFASHML
FFYLTLIRGNSVLSVCGLLFGLYIAMRLAAQYANKRMGNKFDKYLARPPA
STPLFRRDSMMRVVDTIVEEGNEVSEQLRDIIYCNKPVVAIKWMLVGFVI
YQAGKWFSIVTICFIDSLALFSVPLLYEKNKKKVDDALAKASDTASRHLE
SGRRAAADRAVKLRDVAMQKSTPYLEKAPPVARNLAEKMGLTPKKKQ*
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spliced messenger RNA

>Gchil7458.t1 ID=Gchil7458.t1|Name=Gchil7458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000007_pilon:1339705..1340598- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTCCCCCCCCCGCGCGCTCCTTCTTTCCCCTCCTTCATTGATCA
AGCGCCCACCCACTCCACCGCTTCTAAGACCCCCACCACCGACTCCTCCA
TCAACTCCTCCATCAACGACCCCTCCTCGCTCGTCAACATGGATCCATCC
ACCCCCGTAGCCTCGCTCTCCACCCCTTCTGCCTCCGAGGCCATTCCCGC
AGTCCCGCTCCCTGTCGCCCCCAGTAAGAGCCGCATTCGTGCTATCCTGC
TATGGCGCGATCCCAAGATTACGGGCATCATCTTCGCCTCTCATATGCTC
TTCTTCTATCTCACCCTCATCAGGGGAAATTCCGTACTCTCGGTCTGCGG
CCTCCTTTTTGGTTTGTACATCGCCATGCGTCTCGCCGCCCAGTATGCCA
ACAAGCGCATGGGAAACAAATTTGACAAGTATCTTGCTCGTCCCCCAGCA
TCCACTCCGTTGTTCCGACGTGACTCCATGATGCGCGTTGTCGACACCAT
TGTCGAGGAAGGAAATGAGGTTTCCGAGCAACTGCGAGACATTATTTACT
GCAACAAGCCAGTAGTTGCAATCAAGTGGATGCTTGTTGGCTTCGTCATT
TACCAAGCTGGAAAGTGGTTCTCTATTGTCACCATTTGCTTCATAGACTC
GCTTGCCCTTTTCTCCGTCCCGCTCCTGTACGAGAAGAACAAGAAGAAAG
TCGATGACGCATTGGCAAAGGCATCTGACACCGCTTCGCGGCACCTCGAG
TCTGGACGCCGTGCTGCCGCTGATCGCGCCGTCAAGCTTCGTGACGTTGC
TATGCAAAAGTCTACTCCTTACCTCGAGAAAGCGCCACCAGTTGCTAGGA
ATCTTGCTGAGAAGATGGGCCTCACGCCGAAGAAGAAGCAGTAA
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protein sequence of Gchil7458.t1

>Gchil7458.t1 ID=Gchil7458.t1|Name=Gchil7458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MPLPPPRAPSFPSFIDQAPTHSTASKTPTTDSSINSSINDPSSLVNMDPS
TPVASLSTPSASEAIPAVPLPVAPSKSRIRAILLWRDPKITGIIFASHML
FFYLTLIRGNSVLSVCGLLFGLYIAMRLAAQYANKRMGNKFDKYLARPPA
STPLFRRDSMMRVVDTIVEEGNEVSEQLRDIIYCNKPVVAIKWMLVGFVI
YQAGKWFSIVTICFIDSLALFSVPLLYEKNKKKVDDALAKASDTASRHLE
SGRRAAADRAVKLRDVAMQKSTPYLEKAPPVARNLAEKMGLTPKKKQ*
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mRNA from alignment at tig00000007_pilon:1339705..1340598-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7458.t1 ID=Gchil7458.t1|Name=Gchil7458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000007_pilon:1339705..1340598- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCTCCCCCCCCCGCGCGCTCCTTCTTTCCCCTCCTTCATTGATCA
AGCGCCCACCCACTCCACCGCTTCTAAGACCCCCACCACCGACTCCTCCA
TCAACTCCTCCATCAACGACCCCTCCTCGCTCGTCAACATGGATCCATCC
ACCCCCGTAGCCTCGCTCTCCACCCCTTCTGCCTCCGAGGCCATTCCCGC
AGTCCCGCTCCCTGTCGCCCCCAGTAAGAGCCGCATTCGTGCTATCCTGC
TATGGCGCGATCCCAAGATTACGGGCATCATCTTCGCCTCTCATATGCTC
TTCTTCTATCTCACCCTCATCAGGGGAAATTCCGTACTCTCGGTCTGCGG
CCTCCTTTTTGGTTTGTACATCGCCATGCGTCTCGCCGCCCAGTATGCCA
ACAAGCGCATGGGAAACAAATTTGACAAGTATCTTGCTCGTCCCCCAGCA
TCCACTCCGTTGTTCCGACGTGACTCCATGATGCGCGTTGTCGACACCAT
TGTCGAGGAAGGAAATGAGGTTTCCGAGCAACTGCGAGACATTATTTACT
GCAACAAGCCAGTAGTTGCAATCAAGTGGATGCTTGTTGGCTTCGTCATT
TACCAAGCTGGAAAGTGGTTCTCTATTGTCACCATTTGCTTCATAGACTC
GCTTGCCCTTTTCTCCGTCCCGCTCCTGTACGAGAAGAACAAGAAGAAAG
TCGATGACGCATTGGCAAAGGCATCTGACACCGCTTCGCGGCACCTCGAG
TCTGGACGCCGTGCTGCCGCTGATCGCGCCGTCAAGCTTCGTGACGTTGC
TATGCAAAAGTCTACTCCTTACCTCGAGAAAGCGCCACCAGTTGCTAGGA
ATCTTGCTGAGAAGATGGGCCTCACGCCGAAGAAGAAGCAGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1339705..1340598-

>Gchil7458.t1 ID=Gchil7458.t1|Name=Gchil7458.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000007_pilon:1339705..1340598- (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCTCCCCCCCCCGCGCGCTCCTTCTTTCCCCTCCTTCATTGATCA
AGCGCCCACCCACTCCACCGCTTCTAAGACCCCCACCACCGACTCCTCCA
TCAACTCCTCCATCAACGACCCCTCCTCGCTCGTCAACATGGATCCATCC
ACCCCCGTAGCCTCGCTCTCCACCCCTTCTGCCTCCGAGGCCATTCCCGC
AGTCCCGCTCCCTGTCGCCCCCAGTAAGAGCCGCATTCGTGCTATCCTGC
TATGGCGCGATCCCAAGATTACGGGCATCATCTTCGCCTCTCATATGCTC
TTCTTCTATCTCACCCTCATCAGGGGAAATTCCGTACTCTCGGTCTGCGG
CCTCCTTTTTGGTTTGTACATCGCCATGCGTCTCGCCGCCCAGTATGCCA
ACAAGCGCATGGGAAACAAATTTGACAAGTATCTTGCTCGTCCCCCAGCA
TCCACTCCGTTGTTCCGACGTGACTCCATGATGCGCGTTGTCGACACCAT
TGTCGAGGAAGGAAATGAGGTTTCCGAGCAACTGCGAGACATTATTTACT
GCAACAAGCCAGTAGTTGCAATCAAGTGGATGCTTGTTGGCTTCGTCATT
TACCAAGCTGGAAAGTGGTTCTCTATTGTCACCATTTGCTTCATAGACTC
GCTTGCCCTTTTCTCCGTCCCGCTCCTGTACGAGAAGAACAAGAAGAAAG
TCGATGACGCATTGGCAAAGGCATCTGACACCGCTTCGCGGCACCTCGAG
TCTGGACGCCGTGCTGCCGCTGATCGCGCCGTCAAGCTTCGTGACGTTGC
TATGCAAAAGTCTACTCCTTACCTCGAGAAAGCGCCACCAGTTGCTAGGA
ATCTTGCTGAGAAGATGGGCCTCACGCCGAAGAAGAAGCAGTAA
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