Gchil7457.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7457.t1
Unique NameGchil7457.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length534
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1336473..1338243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CML243CT
Preferred nameIMPDH2
PFAMsCBS,IMPDH
Max annot lvl2759|Eukaryota
KEGG rclassRC00143,RC02207
KEGG koko:K00088
KEGG ReactionR01130,R08240
KEGG Pathwayko00230,ko00983,ko01100,ko01110,map00230,map00983,map01100,map01110
KEGG ModuleM00050
GOsGO:0000166,GO:0000323,GO:0000785,GO:0000902,GO:0000904,GO:0001654,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0003938,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006183,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006928,GO:0006935,GO:0006950,GO:0006955,GO:0007154,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007623,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009266,GO:0009267,GO:0009409,GO:0009605,GO:0009607,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0009991,GO:0010033,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0022008,GO:0022607,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0030447,GO:0031175,GO:0031347,GO:0031349,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0032943,GO:0032989,GO:0032990,GO:0033554,GO:0034097,GO:0034404,GO:0034641,GO:0034654,GO:0034774,GO:0035578,GO:0035690,GO:0035821,GO:0036094,GO:0036170,GO:0036180,GO:0036230,GO:0040007,GO:0040011,GO:0042119,GO:0042221,GO:0042278,GO:0042330,GO:0042451,GO:0042455,GO:0042493,GO:0042582,GO:0042594,GO:0043010,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043473,GO:0043933,GO:0044003,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046039,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0046903,GO:0048066,GO:0048468,GO:0048511,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0060041,GO:0060205,GO:0061564,GO:0065003,GO:0065007,GO:0070013,GO:0070661,GO:0070670,GO:0070887,GO:0071310,GO:0071345,GO:0071353,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0075136,GO:0080134,GO:0090407,GO:0097159,GO:0097485,GO:0097708,GO:0099503,GO:0101002,GO:0120036,GO:0120039,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1904813
Evalue1.5e-272
EggNOG OGsCOG0516@1|root,KOG2550@2759|Eukaryota
EC1.1.1.205
DescriptionIMP dehydrogenase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7457Gchil7457Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1336473..1338243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1Gchil7457.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1336473..1338243 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1.stop1Gchil7457.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1336473..1336475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1.CDS1Gchil7457.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1336473..1337927 -
Gchil7457.t1.CDS2Gchil7457.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1338010..1338085 -
Gchil7457.t1.CDS3Gchil7457.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1338173..1338243 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1.exon1Gchil7457.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1336473..1337927 -
Gchil7457.t1.exon2Gchil7457.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1338010..1338085 -
Gchil7457.t1.exon3Gchil7457.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1338173..1338243 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1.intron1Gchil7457.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1337928..1338009 -
Gchil7457.t1.intron2Gchil7457.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1338086..1338172 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7457.t1.start1Gchil7457.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1338241..1338243 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7457.t1 ID=Gchil7457.t1|Name=Gchil7457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp
MAPVSNGAIFNGPGMEGEPKKSPKPAFSPEDMFRYQDGAAAADFLDSGIT
GYTYGDFVMLPGHIYFGVEDVSLKTRITRKTQLHLPLISSPMDTVTESEM
AINMALQGGIGVIHYNNSVREQKREVDRVKRYENGFITDPKTLSPTNTVR
DALEIKNRYGFMGIPVTESGGMNSKLVGIVTNRDVEFVRDKDTPLSDIMV
TELQTATEGCSLELAYTILKESKKGKLPIVNERFELVGLVARTDILKNRD
FPESSKDKSGKRLLCGASIGTRPEDKDRLDALVEVGCDVIMLDSSQGDSV
FQLDMLKYIKNKYPELEIVAGNVVTQNQAYHLIKAGADGLRIGMGSGSIC
TTQEVTACGRAQATAVYRVSKLAREFDIPCIADGGISSSGHIIKGLACGA
SCVMMGGMLAGTEESPGEYFYKDGVRLKKYRGMGSADAMRKGSSVRYFSE
DDRIRVAQGVSGAVADKGSVKRFLPYLRMGVKHGFQDLGVRSITELHSQM
YDGTLRFQVRTPAAQLEGNVHSLFTYEKSTHSG*
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spliced messenger RNA

>Gchil7457.t1 ID=Gchil7457.t1|Name=Gchil7457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00000007_pilon:1336473..1338243- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGGTAAGCAATGGTGCAATCTTCAATGGACCAGGCATGGAGGG
TGAACCGAAGAAGAGCCCGAAGCCTGCTTTTTCCCCAGAAGATATGTTTC
GCTATCAAGACGGAGCTGCAGCCGCAGACTTTTTGGATTCTGGTATTACC
GGGTATACTTATGGCGACTTTGTGATGTTGCCGGGCCATATTTATTTTGG
TGTTGAAGATGTTTCTTTGAAGACGCGTATTACTCGCAAAACTCAACTTC
ATCTTCCACTAATAAGTTCGCCCATGGATACTGTGACAGAGTCGGAAATG
GCCATTAACATGGCTTTACAAGGAGGTATTGGCGTTATTCACTACAATAA
CAGTGTCCGAGAGCAGAAACGTGAGGTTGATCGTGTTAAGAGATACGAGA
ATGGTTTCATCACGGATCCAAAAACCTTGAGTCCAACAAACACGGTTCGC
GATGCCTTGGAAATCAAAAATCGATATGGTTTCATGGGAATCCCTGTAAC
TGAGAGCGGTGGAATGAACAGTAAGTTGGTGGGAATCGTCACAAATCGTG
ACGTTGAATTTGTTCGCGACAAAGATACACCTCTGAGTGACATAATGGTG
ACTGAACTTCAGACGGCGACGGAAGGCTGTTCGCTAGAACTTGCCTACAC
TATACTCAAAGAAAGCAAAAAGGGAAAGTTGCCTATCGTGAATGAACGCT
TTGAGCTCGTTGGCCTCGTGGCAAGAACGGATATTCTAAAGAACCGGGAC
TTTCCAGAGTCTTCGAAGGACAAGAGCGGAAAAAGACTCCTGTGTGGTGC
ATCTATTGGTACAAGACCGGAAGACAAGGATCGACTCGATGCATTGGTTG
AAGTTGGTTGTGATGTCATCATGTTAGACTCTAGCCAAGGCGATTCCGTG
TTCCAATTGGATATGTTGAAGTACATCAAGAACAAGTATCCAGAATTGGA
AATAGTTGCCGGGAATGTCGTGACACAGAACCAGGCCTATCATCTCATAA
AGGCTGGTGCTGATGGCCTTCGGATTGGAATGGGAAGCGGGTCCATTTGT
ACGACTCAAGAAGTTACTGCATGCGGAAGAGCACAGGCGACAGCTGTGTA
CCGTGTTTCCAAACTTGCTCGTGAGTTTGACATACCTTGTATTGCAGACG
GCGGTATTTCTTCTTCTGGGCACATTATCAAAGGGCTGGCATGCGGCGCA
TCCTGTGTGATGATGGGTGGGATGCTTGCTGGCACGGAAGAAAGTCCTGG
TGAATACTTTTACAAAGATGGTGTTCGTTTGAAGAAGTATCGCGGAATGG
GAAGCGCTGATGCTATGAGGAAAGGATCAAGTGTGAGATACTTTTCTGAA
GACGATCGTATTCGGGTCGCACAAGGAGTCTCAGGGGCTGTAGCTGATAA
AGGGTCGGTCAAGAGATTCTTGCCGTACTTGCGCATGGGTGTGAAACACG
GTTTCCAGGACCTCGGGGTCCGAAGCATAACAGAGCTCCACAGTCAGATG
TATGATGGAACCCTGAGATTCCAGGTAAGAACTCCTGCTGCGCAGCTGGA
AGGAAACGTTCATTCTCTATTCACTTACGAGAAGTCGACTCACAGTGGCT
AG
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protein sequence of Gchil7457.t1

>Gchil7457.t1 ID=Gchil7457.t1|Name=Gchil7457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=534bp
MAPVSNGAIFNGPGMEGEPKKSPKPAFSPEDMFRYQDGAAAADFLDSGIT
GYTYGDFVMLPGHIYFGVEDVSLKTRITRKTQLHLPLISSPMDTVTESEM
AINMALQGGIGVIHYNNSVREQKREVDRVKRYENGFITDPKTLSPTNTVR
DALEIKNRYGFMGIPVTESGGMNSKLVGIVTNRDVEFVRDKDTPLSDIMV
TELQTATEGCSLELAYTILKESKKGKLPIVNERFELVGLVARTDILKNRD
FPESSKDKSGKRLLCGASIGTRPEDKDRLDALVEVGCDVIMLDSSQGDSV
FQLDMLKYIKNKYPELEIVAGNVVTQNQAYHLIKAGADGLRIGMGSGSIC
TTQEVTACGRAQATAVYRVSKLAREFDIPCIADGGISSSGHIIKGLACGA
SCVMMGGMLAGTEESPGEYFYKDGVRLKKYRGMGSADAMRKGSSVRYFSE
DDRIRVAQGVSGAVADKGSVKRFLPYLRMGVKHGFQDLGVRSITELHSQM
YDGTLRFQVRTPAAQLEGNVHSLFTYEKSTHSG*
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mRNA from alignment at tig00000007_pilon:1336473..1338243-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7457.t1 ID=Gchil7457.t1|Name=Gchil7457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1771bp|location=Sequence derived from alignment at tig00000007_pilon:1336473..1338243- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCGGTAAGCAATGGTGCAATCTTCAATGGACCAGGCATGGAGGG
TGAACCGAAGAAGAGCCCGAAGTATGTTATCACTTTTGCTCAACCGTGCC
GAAGCCTTGCTTAATCTTACATCAAATGTCTTCTTTAAAAACATTGAAAC
CTTTCTAGGCCTGCTTTTTCCCCAGAAGATATGTTTCGCTATCAAGACGG
AGCTGCAGCCGCAGACTTTTTGGATTCTGGTATTGTGAGTTTTACCATTT
AACCGTTTGAGAAACAATAGAGTGCAATCGAGATATGCTAACTGTAGTCG
TTTGATATGAAACTAGACCGGGTATACTTATGGCGACTTTGTGATGTTGC
CGGGCCATATTTATTTTGGTGTTGAAGATGTTTCTTTGAAGACGCGTATT
ACTCGCAAAACTCAACTTCATCTTCCACTAATAAGTTCGCCCATGGATAC
TGTGACAGAGTCGGAAATGGCCATTAACATGGCTTTACAAGGAGGTATTG
GCGTTATTCACTACAATAACAGTGTCCGAGAGCAGAAACGTGAGGTTGAT
CGTGTTAAGAGATACGAGAATGGTTTCATCACGGATCCAAAAACCTTGAG
TCCAACAAACACGGTTCGCGATGCCTTGGAAATCAAAAATCGATATGGTT
TCATGGGAATCCCTGTAACTGAGAGCGGTGGAATGAACAGTAAGTTGGTG
GGAATCGTCACAAATCGTGACGTTGAATTTGTTCGCGACAAAGATACACC
TCTGAGTGACATAATGGTGACTGAACTTCAGACGGCGACGGAAGGCTGTT
CGCTAGAACTTGCCTACACTATACTCAAAGAAAGCAAAAAGGGAAAGTTG
CCTATCGTGAATGAACGCTTTGAGCTCGTTGGCCTCGTGGCAAGAACGGA
TATTCTAAAGAACCGGGACTTTCCAGAGTCTTCGAAGGACAAGAGCGGAA
AAAGACTCCTGTGTGGTGCATCTATTGGTACAAGACCGGAAGACAAGGAT
CGACTCGATGCATTGGTTGAAGTTGGTTGTGATGTCATCATGTTAGACTC
TAGCCAAGGCGATTCCGTGTTCCAATTGGATATGTTGAAGTACATCAAGA
ACAAGTATCCAGAATTGGAAATAGTTGCCGGGAATGTCGTGACACAGAAC
CAGGCCTATCATCTCATAAAGGCTGGTGCTGATGGCCTTCGGATTGGAAT
GGGAAGCGGGTCCATTTGTACGACTCAAGAAGTTACTGCATGCGGAAGAG
CACAGGCGACAGCTGTGTACCGTGTTTCCAAACTTGCTCGTGAGTTTGAC
ATACCTTGTATTGCAGACGGCGGTATTTCTTCTTCTGGGCACATTATCAA
AGGGCTGGCATGCGGCGCATCCTGTGTGATGATGGGTGGGATGCTTGCTG
GCACGGAAGAAAGTCCTGGTGAATACTTTTACAAAGATGGTGTTCGTTTG
AAGAAGTATCGCGGAATGGGAAGCGCTGATGCTATGAGGAAAGGATCAAG
TGTGAGATACTTTTCTGAAGACGATCGTATTCGGGTCGCACAAGGAGTCT
CAGGGGCTGTAGCTGATAAAGGGTCGGTCAAGAGATTCTTGCCGTACTTG
CGCATGGGTGTGAAACACGGTTTCCAGGACCTCGGGGTCCGAAGCATAAC
AGAGCTCCACAGTCAGATGTATGATGGAACCCTGAGATTCCAGGTAAGAA
CTCCTGCTGCGCAGCTGGAAGGAAACGTTCATTCTCTATTCACTTACGAG
AAGTCGACTCACAGTGGCTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:1336473..1338243-

>Gchil7457.t1 ID=Gchil7457.t1|Name=Gchil7457.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00000007_pilon:1336473..1338243- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCGGTAAGCAATGGTGCAATCTTCAATGGACCAGGCATGGAGGG
TGAACCGAAGAAGAGCCCGAAGCCTGCTTTTTCCCCAGAAGATATGTTTC
GCTATCAAGACGGAGCTGCAGCCGCAGACTTTTTGGATTCTGGTATTACC
GGGTATACTTATGGCGACTTTGTGATGTTGCCGGGCCATATTTATTTTGG
TGTTGAAGATGTTTCTTTGAAGACGCGTATTACTCGCAAAACTCAACTTC
ATCTTCCACTAATAAGTTCGCCCATGGATACTGTGACAGAGTCGGAAATG
GCCATTAACATGGCTTTACAAGGAGGTATTGGCGTTATTCACTACAATAA
CAGTGTCCGAGAGCAGAAACGTGAGGTTGATCGTGTTAAGAGATACGAGA
ATGGTTTCATCACGGATCCAAAAACCTTGAGTCCAACAAACACGGTTCGC
GATGCCTTGGAAATCAAAAATCGATATGGTTTCATGGGAATCCCTGTAAC
TGAGAGCGGTGGAATGAACAGTAAGTTGGTGGGAATCGTCACAAATCGTG
ACGTTGAATTTGTTCGCGACAAAGATACACCTCTGAGTGACATAATGGTG
ACTGAACTTCAGACGGCGACGGAAGGCTGTTCGCTAGAACTTGCCTACAC
TATACTCAAAGAAAGCAAAAAGGGAAAGTTGCCTATCGTGAATGAACGCT
TTGAGCTCGTTGGCCTCGTGGCAAGAACGGATATTCTAAAGAACCGGGAC
TTTCCAGAGTCTTCGAAGGACAAGAGCGGAAAAAGACTCCTGTGTGGTGC
ATCTATTGGTACAAGACCGGAAGACAAGGATCGACTCGATGCATTGGTTG
AAGTTGGTTGTGATGTCATCATGTTAGACTCTAGCCAAGGCGATTCCGTG
TTCCAATTGGATATGTTGAAGTACATCAAGAACAAGTATCCAGAATTGGA
AATAGTTGCCGGGAATGTCGTGACACAGAACCAGGCCTATCATCTCATAA
AGGCTGGTGCTGATGGCCTTCGGATTGGAATGGGAAGCGGGTCCATTTGT
ACGACTCAAGAAGTTACTGCATGCGGAAGAGCACAGGCGACAGCTGTGTA
CCGTGTTTCCAAACTTGCTCGTGAGTTTGACATACCTTGTATTGCAGACG
GCGGTATTTCTTCTTCTGGGCACATTATCAAAGGGCTGGCATGCGGCGCA
TCCTGTGTGATGATGGGTGGGATGCTTGCTGGCACGGAAGAAAGTCCTGG
TGAATACTTTTACAAAGATGGTGTTCGTTTGAAGAAGTATCGCGGAATGG
GAAGCGCTGATGCTATGAGGAAAGGATCAAGTGTGAGATACTTTTCTGAA
GACGATCGTATTCGGGTCGCACAAGGAGTCTCAGGGGCTGTAGCTGATAA
AGGGTCGGTCAAGAGATTCTTGCCGTACTTGCGCATGGGTGTGAAACACG
GTTTCCAGGACCTCGGGGTCCGAAGCATAACAGAGCTCCACAGTCAGATG
TATGATGGAACCCTGAGATTCCAGGTAAGAACTCCTGCTGCGCAGCTGGA
AGGAAACGTTCATTCTCTATTCACTTACGAGAAGTCGACTCACAGTGGCT
AG
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