Gchil7452.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7452.t1
Unique NameGchil7452.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1287404..1288240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7452Gchil7452Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1287404..1288240 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7452.t1.start1Gchil7452.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1287404..1287406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7452.t1.CDS1Gchil7452.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1287404..1288240 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7452.t1.exon1Gchil7452.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1287404..1288240 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7452.t1.stop1Gchil7452.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1288238..1288240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7452.t1Gchil7452.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1287404..1288240 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7452.t1 ID=Gchil7452.t1|Name=Gchil7452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MPRPNKRPAADFAADCDDPLHFVQVYCKRRNIAFDTGASPVEKMCHAAAS
HARDEFKRIRNACRSDRSPAPDRTGLTPAQKYTIRLQNNRRSASASKVYT
EILKREHAHRLVQLSMRVAHLQRTLDDEKARSNRLLKRLLQDARVSASAA
SQQPAPSTPLHQRFVNSRAPDSNNIPPCSLSPVALHHSETLHHSDAAHFH
TGLTCSQSQDLHDKHPVSSPPPNHSLPMSPALQIPDVNSQPTQELPPFKP
LNSDELVPSLPPSDFFTTSQPLATRTSP*
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spliced messenger RNA

>Gchil7452.t1 ID=Gchil7452.t1|Name=Gchil7452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000007_pilon:1287404..1288240+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCCCCAACAAGAGACCCGCCGCAGACTTCGCCGCCGACTGCGA
CGATCCCCTGCATTTCGTTCAAGTGTACTGCAAGCGCCGCAACATCGCCT
TCGACACCGGAGCCTCCCCCGTCGAGAAGATGTGCCACGCCGCCGCCTCA
CACGCCCGCGACGAGTTCAAGCGCATTCGAAATGCCTGCCGCTCCGACCG
CTCGCCCGCCCCCGACCGCACCGGCCTCACCCCCGCCCAAAAGTACACCA
TCCGTCTGCAGAACAACCGTCGCTCCGCCAGCGCCTCCAAGGTCTACACC
GAGATCCTCAAGCGCGAGCACGCTCACCGCCTTGTTCAACTCTCCATGCG
CGTCGCCCACCTACAGCGCACTCTCGACGACGAGAAGGCCCGCTCCAATC
GCCTGCTCAAGCGTTTGCTTCAGGACGCACGTGTGTCCGCCTCCGCCGCT
TCGCAGCAGCCCGCTCCCTCCACCCCGCTGCACCAGCGTTTCGTTAACTC
CAGGGCCCCCGATTCTAACAACATCCCGCCATGCTCGCTCTCGCCCGTCG
CTCTGCACCACTCCGAAACCCTGCACCACTCTGACGCCGCCCACTTTCAC
ACCGGCCTCACCTGCTCGCAGAGTCAGGACCTGCACGACAAGCACCCCGT
CTCCTCTCCGCCGCCAAACCACTCCCTCCCGATGTCGCCCGCCCTGCAGA
TTCCCGACGTAAATTCGCAGCCCACCCAAGAGCTCCCGCCCTTCAAGCCC
TTGAACTCGGATGAACTTGTACCGTCGTTGCCGCCCTCCGACTTTTTTAC
CACCTCGCAGCCCTTGGCAACAAGAACTTCTCCATGA
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protein sequence of Gchil7452.t1

>Gchil7452.t1 ID=Gchil7452.t1|Name=Gchil7452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MPRPNKRPAADFAADCDDPLHFVQVYCKRRNIAFDTGASPVEKMCHAAAS
HARDEFKRIRNACRSDRSPAPDRTGLTPAQKYTIRLQNNRRSASASKVYT
EILKREHAHRLVQLSMRVAHLQRTLDDEKARSNRLLKRLLQDARVSASAA
SQQPAPSTPLHQRFVNSRAPDSNNIPPCSLSPVALHHSETLHHSDAAHFH
TGLTCSQSQDLHDKHPVSSPPPNHSLPMSPALQIPDVNSQPTQELPPFKP
LNSDELVPSLPPSDFFTTSQPLATRTSP*
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mRNA from alignment at tig00000007_pilon:1287404..1288240+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7452.t1 ID=Gchil7452.t1|Name=Gchil7452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000007_pilon:1287404..1288240+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGCCCCAACAAGAGACCCGCCGCAGACTTCGCCGCCGACTGCGA
CGATCCCCTGCATTTCGTTCAAGTGTACTGCAAGCGCCGCAACATCGCCT
TCGACACCGGAGCCTCCCCCGTCGAGAAGATGTGCCACGCCGCCGCCTCA
CACGCCCGCGACGAGTTCAAGCGCATTCGAAATGCCTGCCGCTCCGACCG
CTCGCCCGCCCCCGACCGCACCGGCCTCACCCCCGCCCAAAAGTACACCA
TCCGTCTGCAGAACAACCGTCGCTCCGCCAGCGCCTCCAAGGTCTACACC
GAGATCCTCAAGCGCGAGCACGCTCACCGCCTTGTTCAACTCTCCATGCG
CGTCGCCCACCTACAGCGCACTCTCGACGACGAGAAGGCCCGCTCCAATC
GCCTGCTCAAGCGTTTGCTTCAGGACGCACGTGTGTCCGCCTCCGCCGCT
TCGCAGCAGCCCGCTCCCTCCACCCCGCTGCACCAGCGTTTCGTTAACTC
CAGGGCCCCCGATTCTAACAACATCCCGCCATGCTCGCTCTCGCCCGTCG
CTCTGCACCACTCCGAAACCCTGCACCACTCTGACGCCGCCCACTTTCAC
ACCGGCCTCACCTGCTCGCAGAGTCAGGACCTGCACGACAAGCACCCCGT
CTCCTCTCCGCCGCCAAACCACTCCCTCCCGATGTCGCCCGCCCTGCAGA
TTCCCGACGTAAATTCGCAGCCCACCCAAGAGCTCCCGCCCTTCAAGCCC
TTGAACTCGGATGAACTTGTACCGTCGTTGCCGCCCTCCGACTTTTTTAC
CACCTCGCAGCCCTTGGCAACAAGAACTTCTCCATGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1287404..1288240+

>Gchil7452.t1 ID=Gchil7452.t1|Name=Gchil7452.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000007_pilon:1287404..1288240+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCGCCCCAACAAGAGACCCGCCGCAGACTTCGCCGCCGACTGCGA
CGATCCCCTGCATTTCGTTCAAGTGTACTGCAAGCGCCGCAACATCGCCT
TCGACACCGGAGCCTCCCCCGTCGAGAAGATGTGCCACGCCGCCGCCTCA
CACGCCCGCGACGAGTTCAAGCGCATTCGAAATGCCTGCCGCTCCGACCG
CTCGCCCGCCCCCGACCGCACCGGCCTCACCCCCGCCCAAAAGTACACCA
TCCGTCTGCAGAACAACCGTCGCTCCGCCAGCGCCTCCAAGGTCTACACC
GAGATCCTCAAGCGCGAGCACGCTCACCGCCTTGTTCAACTCTCCATGCG
CGTCGCCCACCTACAGCGCACTCTCGACGACGAGAAGGCCCGCTCCAATC
GCCTGCTCAAGCGTTTGCTTCAGGACGCACGTGTGTCCGCCTCCGCCGCT
TCGCAGCAGCCCGCTCCCTCCACCCCGCTGCACCAGCGTTTCGTTAACTC
CAGGGCCCCCGATTCTAACAACATCCCGCCATGCTCGCTCTCGCCCGTCG
CTCTGCACCACTCCGAAACCCTGCACCACTCTGACGCCGCCCACTTTCAC
ACCGGCCTCACCTGCTCGCAGAGTCAGGACCTGCACGACAAGCACCCCGT
CTCCTCTCCGCCGCCAAACCACTCCCTCCCGATGTCGCCCGCCCTGCAGA
TTCCCGACGTAAATTCGCAGCCCACCCAAGAGCTCCCGCCCTTCAAGCCC
TTGAACTCGGATGAACTTGTACCGTCGTTGCCGCCCTCCGACTTTTTTAC
CACCTCGCAGCCCTTGGCAACAAGAACTTCTCCATGA
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