Gchil7442.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7442.t1
Unique Name	Gchil7442.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	714

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1234770..1236911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7442	Gchil7442	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1234770..1236911 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7442.t1.start1	Gchil7442.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1234770..1234772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7442.t1.CDS1	Gchil7442.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1234770..1236911 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7442.t1.exon1	Gchil7442.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1234770..1236911 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7442.t1.stop1	Gchil7442.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1236909..1236911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7442.t1	Gchil7442.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1234770..1236911 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1234770..1236911+
coding sequence from alignment at tig00000007_pilon:1234770..1236911+

mRNA sequence

>Gchil7442.t1 ID=Gchil7442.t1|Name=Gchil7442.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp
MARVHFCGFLCSLVICLSLSFNSLAFQDKLPVKLPLRSRRLVFHRDFWKT
VPELNSVVRDESSPVDPFIQYEGNGNNEGNEMQEASDTVASDPEVKVDTE
AEDTQEQPKEEEEADAFDTNDSDDSDDQAQVVDPADSTNANETDTAPESG
VSESGVSEGANEDSVSEVESRDGSEPVAPDSGISSLSADNSSNTEESSDQ
SVSQPSNATESAADEDSSTLLSNTTGGNNDTNAFMAFKLRHMVETDSTAD
EAFHLVTIFEEGKFSGPFSDSPSSTNIDAVSSSETEKWYMESAYADRISF
RLDYTPDSSDYKISEPVIAVSSETGIQPVLQDFQNDPENGEGSFSVLYRC
LSEGPEESYISLHMQVTGSHSFDTAWKKVCGRGRHEHMEFGFTSHDLGTV
LFNKDGTYGKDEQRILEIGPMDTSTELTMKLTPPAYTLDFKDPFIISNSD
YVSVALRGTVAGGTVTSDGLTKFSVLYECQATAIANIAFSVAIPPWDNMT
AVWRKDCGGKSSQSLLIGTTGPGSYEVVHEGEVNLQYNITENTYIGDVQD
VAEVIPGNTDYKKFYITNSDDTSDIHVQTLSMTMSDPSVVSPTIQTSLVA
SSSYLSTSGGVIGRKETKSLYLHFICKKEGKSLILVTLPILRYRNIEFGF
LKECFEPKIHRHSGFLQTAGSIMEATLLLAIVGCGAGWVYYRRRSRNVGK
KYAAVPTSERGLP*

spliced messenger RNA

>Gchil7442.t1 ID=Gchil7442.t1|Name=Gchil7442.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00000007_pilon:1234770..1236911+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTGTCCATTTCTGTGGATTTCTATGCTCCCTTGTGATCTGCTT
GAGCCTAAGTTTCAACTCTCTTGCCTTTCAAGACAAATTGCCTGTTAAAC
TTCCGCTTCGATCACGTCGACTCGTCTTCCATCGCGACTTTTGGAAAACC
GTTCCGGAATTGAACTCCGTTGTCCGCGATGAGTCTTCACCCGTGGATCC
TTTTATTCAATATGAAGGAAATGGAAACAACGAGGGCAACGAAATGCAGG
AAGCGTCTGACACTGTAGCATCTGACCCCGAGGTGAAGGTCGATACGGAG
GCGGAGGACACTCAGGAACAGCCGAAAGAAGAGGAAGAAGCAGATGCTTT
TGATACAAATGATTCGGACGATTCGGACGATCAAGCCCAAGTGGTAGACC
CGGCTGATTCCACTAACGCTAATGAAACCGACACGGCACCGGAAAGCGGA
GTCTCCGAAAGTGGAGTTTCGGAGGGCGCTAACGAAGATAGTGTATCTGA
GGTAGAGTCAAGAGATGGGAGCGAACCTGTTGCACCAGATTCGGGCATTT
CTTCTTTGAGCGCAGACAATTCATCTAATACCGAAGAGAGCAGTGATCAA
TCTGTCTCGCAGCCATCCAATGCAACTGAAAGTGCAGCAGACGAAGACTC
TTCTACACTCTTGTCCAATACAACTGGAGGAAACAACGATACGAATGCAT
TTATGGCCTTTAAGTTGCGCCATATGGTGGAAACCGATTCGACTGCAGAT
GAGGCCTTTCACCTCGTTACCATCTTCGAAGAAGGAAAATTCAGTGGTCC
TTTTTCTGACAGTCCATCTTCGACCAATATTGATGCAGTTTCTTCCTCCG
AAACGGAGAAATGGTACATGGAAAGTGCATACGCAGATAGAATATCTTTC
CGCCTTGATTACACTCCAGACTCTTCTGACTACAAGATTTCAGAGCCCGT
CATTGCCGTGTCGTCTGAAACTGGAATACAGCCTGTGCTCCAGGACTTTC
AAAACGATCCTGAGAACGGAGAGGGCTCATTTTCTGTCCTGTATCGATGT
TTATCGGAAGGACCCGAAGAGTCTTATATATCTCTTCACATGCAAGTGAC
AGGATCCCATAGTTTTGATACGGCATGGAAGAAAGTATGCGGTCGTGGGC
GTCACGAGCACATGGAATTCGGCTTCACATCTCATGATCTAGGGACCGTA
CTGTTTAACAAAGACGGTACATATGGGAAAGATGAACAAAGAATTCTGGA
GATTGGCCCCATGGATACAAGTACGGAACTAACTATGAAGCTTACCCCAC
CTGCATATACCCTTGATTTCAAAGATCCGTTTATCATTTCGAACTCAGAC
TACGTCTCGGTTGCATTACGTGGTACAGTTGCTGGGGGAACCGTGACTAG
TGATGGGCTGACCAAGTTTTCTGTTCTTTATGAATGCCAAGCGACCGCAA
TTGCAAACATTGCATTTTCGGTAGCGATCCCCCCATGGGATAACATGACA
GCGGTCTGGCGTAAAGATTGTGGTGGAAAGTCCTCCCAATCTCTGCTTAT
TGGCACTACTGGCCCAGGTTCGTACGAGGTTGTACACGAAGGGGAAGTCA
ATTTGCAATACAACATTACTGAAAATACATACATTGGTGATGTGCAAGAT
GTTGCGGAAGTAATTCCCGGGAACACTGACTACAAGAAGTTCTACATAAC
AAACAGCGACGATACGTCAGACATTCATGTGCAAACTCTTTCGATGACCA
TGTCAGACCCATCTGTCGTTTCTCCTACTATACAAACATCTTTGGTCGCT
AGTTCCTCCTATCTCTCAACAAGTGGGGGAGTGATCGGGCGAAAGGAAAC
AAAGTCACTATACCTGCATTTTATATGCAAAAAAGAAGGGAAGTCGCTTA
TTTTAGTGACTCTCCCAATACTGAGGTACAGGAACATCGAATTTGGTTTC
CTAAAAGAATGCTTTGAACCCAAAATACATCGACATTCAGGTTTTCTGCA
GACCGCTGGCTCAATCATGGAAGCTACTCTTCTATTGGCCATAGTTGGGT
GCGGGGCAGGATGGGTATACTATAGACGACGAAGTCGAAATGTGGGCAAG
AAATATGCAGCTGTTCCGACGAGCGAACGCGGCCTACCCTAG

protein sequence of Gchil7442.t1

>Gchil7442.t1 ID=Gchil7442.t1|Name=Gchil7442.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=714bp
MARVHFCGFLCSLVICLSLSFNSLAFQDKLPVKLPLRSRRLVFHRDFWKT
VPELNSVVRDESSPVDPFIQYEGNGNNEGNEMQEASDTVASDPEVKVDTE
AEDTQEQPKEEEEADAFDTNDSDDSDDQAQVVDPADSTNANETDTAPESG
VSESGVSEGANEDSVSEVESRDGSEPVAPDSGISSLSADNSSNTEESSDQ
SVSQPSNATESAADEDSSTLLSNTTGGNNDTNAFMAFKLRHMVETDSTAD
EAFHLVTIFEEGKFSGPFSDSPSSTNIDAVSSSETEKWYMESAYADRISF
RLDYTPDSSDYKISEPVIAVSSETGIQPVLQDFQNDPENGEGSFSVLYRC
LSEGPEESYISLHMQVTGSHSFDTAWKKVCGRGRHEHMEFGFTSHDLGTV
LFNKDGTYGKDEQRILEIGPMDTSTELTMKLTPPAYTLDFKDPFIISNSD
YVSVALRGTVAGGTVTSDGLTKFSVLYECQATAIANIAFSVAIPPWDNMT
AVWRKDCGGKSSQSLLIGTTGPGSYEVVHEGEVNLQYNITENTYIGDVQD
VAEVIPGNTDYKKFYITNSDDTSDIHVQTLSMTMSDPSVVSPTIQTSLVA
SSSYLSTSGGVIGRKETKSLYLHFICKKEGKSLILVTLPILRYRNIEFGF
LKECFEPKIHRHSGFLQTAGSIMEATLLLAIVGCGAGWVYYRRRSRNVGK
KYAAVPTSERGLP*

mRNA from alignment at tig00000007_pilon:1234770..1236911+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7442.t1 ID=Gchil7442.t1|Name=Gchil7442.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00000007_pilon:1234770..1236911+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGTCCATTTCTGTGGATTTCTATGCTCCCTTGTGATCTGCTT
GAGCCTAAGTTTCAACTCTCTTGCCTTTCAAGACAAATTGCCTGTTAAAC
TTCCGCTTCGATCACGTCGACTCGTCTTCCATCGCGACTTTTGGAAAACC
GTTCCGGAATTGAACTCCGTTGTCCGCGATGAGTCTTCACCCGTGGATCC
TTTTATTCAATATGAAGGAAATGGAAACAACGAGGGCAACGAAATGCAGG
AAGCGTCTGACACTGTAGCATCTGACCCCGAGGTGAAGGTCGATACGGAG
GCGGAGGACACTCAGGAACAGCCGAAAGAAGAGGAAGAAGCAGATGCTTT
TGATACAAATGATTCGGACGATTCGGACGATCAAGCCCAAGTGGTAGACC
CGGCTGATTCCACTAACGCTAATGAAACCGACACGGCACCGGAAAGCGGA
GTCTCCGAAAGTGGAGTTTCGGAGGGCGCTAACGAAGATAGTGTATCTGA
GGTAGAGTCAAGAGATGGGAGCGAACCTGTTGCACCAGATTCGGGCATTT
CTTCTTTGAGCGCAGACAATTCATCTAATACCGAAGAGAGCAGTGATCAA
TCTGTCTCGCAGCCATCCAATGCAACTGAAAGTGCAGCAGACGAAGACTC
TTCTACACTCTTGTCCAATACAACTGGAGGAAACAACGATACGAATGCAT
TTATGGCCTTTAAGTTGCGCCATATGGTGGAAACCGATTCGACTGCAGAT
GAGGCCTTTCACCTCGTTACCATCTTCGAAGAAGGAAAATTCAGTGGTCC
TTTTTCTGACAGTCCATCTTCGACCAATATTGATGCAGTTTCTTCCTCCG
AAACGGAGAAATGGTACATGGAAAGTGCATACGCAGATAGAATATCTTTC
CGCCTTGATTACACTCCAGACTCTTCTGACTACAAGATTTCAGAGCCCGT
CATTGCCGTGTCGTCTGAAACTGGAATACAGCCTGTGCTCCAGGACTTTC
AAAACGATCCTGAGAACGGAGAGGGCTCATTTTCTGTCCTGTATCGATGT
TTATCGGAAGGACCCGAAGAGTCTTATATATCTCTTCACATGCAAGTGAC
AGGATCCCATAGTTTTGATACGGCATGGAAGAAAGTATGCGGTCGTGGGC
GTCACGAGCACATGGAATTCGGCTTCACATCTCATGATCTAGGGACCGTA
CTGTTTAACAAAGACGGTACATATGGGAAAGATGAACAAAGAATTCTGGA
GATTGGCCCCATGGATACAAGTACGGAACTAACTATGAAGCTTACCCCAC
CTGCATATACCCTTGATTTCAAAGATCCGTTTATCATTTCGAACTCAGAC
TACGTCTCGGTTGCATTACGTGGTACAGTTGCTGGGGGAACCGTGACTAG
TGATGGGCTGACCAAGTTTTCTGTTCTTTATGAATGCCAAGCGACCGCAA
TTGCAAACATTGCATTTTCGGTAGCGATCCCCCCATGGGATAACATGACA
GCGGTCTGGCGTAAAGATTGTGGTGGAAAGTCCTCCCAATCTCTGCTTAT
TGGCACTACTGGCCCAGGTTCGTACGAGGTTGTACACGAAGGGGAAGTCA
ATTTGCAATACAACATTACTGAAAATACATACATTGGTGATGTGCAAGAT
GTTGCGGAAGTAATTCCCGGGAACACTGACTACAAGAAGTTCTACATAAC
AAACAGCGACGATACGTCAGACATTCATGTGCAAACTCTTTCGATGACCA
TGTCAGACCCATCTGTCGTTTCTCCTACTATACAAACATCTTTGGTCGCT
AGTTCCTCCTATCTCTCAACAAGTGGGGGAGTGATCGGGCGAAAGGAAAC
AAAGTCACTATACCTGCATTTTATATGCAAAAAAGAAGGGAAGTCGCTTA
TTTTAGTGACTCTCCCAATACTGAGGTACAGGAACATCGAATTTGGTTTC
CTAAAAGAATGCTTTGAACCCAAAATACATCGACATTCAGGTTTTCTGCA
GACCGCTGGCTCAATCATGGAAGCTACTCTTCTATTGGCCATAGTTGGGT
GCGGGGCAGGATGGGTATACTATAGACGACGAAGTCGAAATGTGGGCAAG
AAATATGCAGCTGTTCCGACGAGCGAACGCGGCCTACCCTAG

Coding sequence (CDS) from alignment at tig00000007_pilon:1234770..1236911+

>Gchil7442.t1 ID=Gchil7442.t1|Name=Gchil7442.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2142bp|location=Sequence derived from alignment at tig00000007_pilon:1234770..1236911+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGTGTCCATTTCTGTGGATTTCTATGCTCCCTTGTGATCTGCTT
GAGCCTAAGTTTCAACTCTCTTGCCTTTCAAGACAAATTGCCTGTTAAAC
TTCCGCTTCGATCACGTCGACTCGTCTTCCATCGCGACTTTTGGAAAACC
GTTCCGGAATTGAACTCCGTTGTCCGCGATGAGTCTTCACCCGTGGATCC
TTTTATTCAATATGAAGGAAATGGAAACAACGAGGGCAACGAAATGCAGG
AAGCGTCTGACACTGTAGCATCTGACCCCGAGGTGAAGGTCGATACGGAG
GCGGAGGACACTCAGGAACAGCCGAAAGAAGAGGAAGAAGCAGATGCTTT
TGATACAAATGATTCGGACGATTCGGACGATCAAGCCCAAGTGGTAGACC
CGGCTGATTCCACTAACGCTAATGAAACCGACACGGCACCGGAAAGCGGA
GTCTCCGAAAGTGGAGTTTCGGAGGGCGCTAACGAAGATAGTGTATCTGA
GGTAGAGTCAAGAGATGGGAGCGAACCTGTTGCACCAGATTCGGGCATTT
CTTCTTTGAGCGCAGACAATTCATCTAATACCGAAGAGAGCAGTGATCAA
TCTGTCTCGCAGCCATCCAATGCAACTGAAAGTGCAGCAGACGAAGACTC
TTCTACACTCTTGTCCAATACAACTGGAGGAAACAACGATACGAATGCAT
TTATGGCCTTTAAGTTGCGCCATATGGTGGAAACCGATTCGACTGCAGAT
GAGGCCTTTCACCTCGTTACCATCTTCGAAGAAGGAAAATTCAGTGGTCC
TTTTTCTGACAGTCCATCTTCGACCAATATTGATGCAGTTTCTTCCTCCG
AAACGGAGAAATGGTACATGGAAAGTGCATACGCAGATAGAATATCTTTC
CGCCTTGATTACACTCCAGACTCTTCTGACTACAAGATTTCAGAGCCCGT
CATTGCCGTGTCGTCTGAAACTGGAATACAGCCTGTGCTCCAGGACTTTC
AAAACGATCCTGAGAACGGAGAGGGCTCATTTTCTGTCCTGTATCGATGT
TTATCGGAAGGACCCGAAGAGTCTTATATATCTCTTCACATGCAAGTGAC
AGGATCCCATAGTTTTGATACGGCATGGAAGAAAGTATGCGGTCGTGGGC
GTCACGAGCACATGGAATTCGGCTTCACATCTCATGATCTAGGGACCGTA
CTGTTTAACAAAGACGGTACATATGGGAAAGATGAACAAAGAATTCTGGA
GATTGGCCCCATGGATACAAGTACGGAACTAACTATGAAGCTTACCCCAC
CTGCATATACCCTTGATTTCAAAGATCCGTTTATCATTTCGAACTCAGAC
TACGTCTCGGTTGCATTACGTGGTACAGTTGCTGGGGGAACCGTGACTAG
TGATGGGCTGACCAAGTTTTCTGTTCTTTATGAATGCCAAGCGACCGCAA
TTGCAAACATTGCATTTTCGGTAGCGATCCCCCCATGGGATAACATGACA
GCGGTCTGGCGTAAAGATTGTGGTGGAAAGTCCTCCCAATCTCTGCTTAT
TGGCACTACTGGCCCAGGTTCGTACGAGGTTGTACACGAAGGGGAAGTCA
ATTTGCAATACAACATTACTGAAAATACATACATTGGTGATGTGCAAGAT
GTTGCGGAAGTAATTCCCGGGAACACTGACTACAAGAAGTTCTACATAAC
AAACAGCGACGATACGTCAGACATTCATGTGCAAACTCTTTCGATGACCA
TGTCAGACCCATCTGTCGTTTCTCCTACTATACAAACATCTTTGGTCGCT
AGTTCCTCCTATCTCTCAACAAGTGGGGGAGTGATCGGGCGAAAGGAAAC
AAAGTCACTATACCTGCATTTTATATGCAAAAAAGAAGGGAAGTCGCTTA
TTTTAGTGACTCTCCCAATACTGAGGTACAGGAACATCGAATTTGGTTTC
CTAAAAGAATGCTTTGAACCCAAAATACATCGACATTCAGGTTTTCTGCA
GACCGCTGGCTCAATCATGGAAGCTACTCTTCTATTGGCCATAGTTGGGT
GCGGGGCAGGATGGGTATACTATAGACGACGAAGTCGAAATGTGGGCAAG
AAATATGCAGCTGTTCCGACGAGCGAACGCGGCCTACCCTAG