Gchil7424.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7424.t1
Unique NameGchil7424.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1133792..1134526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.E01294.1.p
PFAMsRRP36
Max annot lvl35493|Streptophyta
KEGG koko:K14795
Evalue9.02e-23
EggNOG OGsKOG3190@1|root,KOG3190@2759|Eukaryota,37JGE@33090|Viridiplantae,3GBIU@35493|Streptophyta,44IWU@71274|asterids
DescriptionRibosomal RNA processing protein 36 homolog
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7424Gchil7424Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1133792..1134526 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7424.t1.stop1Gchil7424.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1133792..1133794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7424.t1.CDS1Gchil7424.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1133792..1134526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7424.t1.exon1Gchil7424.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1133792..1134526 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7424.t1.start1Gchil7424.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1134524..1134526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7424.t1Gchil7424.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1133792..1134526 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7424.t1 ID=Gchil7424.t1|Name=Gchil7424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MAMSSTELVPRGSSREEPTLGEVLQSKEKSARGKAEYASHSILRKLARGI
EFAPRSIKERGKKSRPREISSRAPVPVGRERCLGIDNGAHQSRSLRKFDP
RFEEHCGDLLEEHVERNYAFVRSIQNSEKKSLEEKVKKNPEDYDASHELK
SMEQSEIRRNALLRRRNILSAYKKNEKEAVKRGKQPYFLKEKDVRNLEMR
AKFEELKKTGGVKRYIQKRRKRLAGKDKKLLPNRRPLSNPGSGS*
back to top

spliced messenger RNA

>Gchil7424.t1 ID=Gchil7424.t1|Name=Gchil7424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000007_pilon:1133792..1134526- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATGAGTTCTACAGAACTGGTGCCACGAGGCTCAAGTAGGGAAGA
ACCAACGTTAGGAGAAGTTCTGCAGTCGAAAGAGAAATCCGCGAGAGGAA
AAGCTGAATACGCATCTCATTCAATACTCAGGAAACTCGCCCGTGGAATT
GAATTTGCACCGAGAAGCATCAAGGAACGCGGGAAAAAATCCAGACCACG
AGAAATATCATCTCGTGCCCCAGTTCCCGTCGGCCGAGAAAGATGTCTTG
GGATAGACAATGGAGCGCACCAGTCTCGCAGCCTGCGAAAATTTGATCCA
AGATTTGAGGAACATTGTGGAGACCTTCTTGAAGAACATGTGGAAAGGAA
CTATGCGTTTGTGCGCTCAATACAAAACTCAGAGAAGAAATCTTTGGAAG
AAAAAGTGAAGAAGAACCCAGAAGACTATGATGCTTCTCATGAGTTGAAA
AGCATGGAACAAAGCGAAATACGGCGAAACGCATTGCTTCGGAGACGAAA
CATCCTCTCAGCTTACAAAAAAAATGAAAAGGAGGCCGTCAAGAGAGGGA
AGCAACCGTATTTCTTGAAGGAAAAGGATGTTCGAAACTTGGAGATGAGG
GCCAAGTTTGAAGAACTGAAGAAGACGGGTGGCGTCAAAAGGTACATCCA
GAAGCGACGAAAACGCCTTGCTGGAAAAGATAAGAAGCTCCTGCCGAATC
GACGCCCTTTGTCAAACCCTGGTTCTGGATCATGA
back to top

protein sequence of Gchil7424.t1

>Gchil7424.t1 ID=Gchil7424.t1|Name=Gchil7424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MAMSSTELVPRGSSREEPTLGEVLQSKEKSARGKAEYASHSILRKLARGI
EFAPRSIKERGKKSRPREISSRAPVPVGRERCLGIDNGAHQSRSLRKFDP
RFEEHCGDLLEEHVERNYAFVRSIQNSEKKSLEEKVKKNPEDYDASHELK
SMEQSEIRRNALLRRRNILSAYKKNEKEAVKRGKQPYFLKEKDVRNLEMR
AKFEELKKTGGVKRYIQKRRKRLAGKDKKLLPNRRPLSNPGSGS*
back to top

mRNA from alignment at tig00000007_pilon:1133792..1134526-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7424.t1 ID=Gchil7424.t1|Name=Gchil7424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000007_pilon:1133792..1134526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATGAGTTCTACAGAACTGGTGCCACGAGGCTCAAGTAGGGAAGA
ACCAACGTTAGGAGAAGTTCTGCAGTCGAAAGAGAAATCCGCGAGAGGAA
AAGCTGAATACGCATCTCATTCAATACTCAGGAAACTCGCCCGTGGAATT
GAATTTGCACCGAGAAGCATCAAGGAACGCGGGAAAAAATCCAGACCACG
AGAAATATCATCTCGTGCCCCAGTTCCCGTCGGCCGAGAAAGATGTCTTG
GGATAGACAATGGAGCGCACCAGTCTCGCAGCCTGCGAAAATTTGATCCA
AGATTTGAGGAACATTGTGGAGACCTTCTTGAAGAACATGTGGAAAGGAA
CTATGCGTTTGTGCGCTCAATACAAAACTCAGAGAAGAAATCTTTGGAAG
AAAAAGTGAAGAAGAACCCAGAAGACTATGATGCTTCTCATGAGTTGAAA
AGCATGGAACAAAGCGAAATACGGCGAAACGCATTGCTTCGGAGACGAAA
CATCCTCTCAGCTTACAAAAAAAATGAAAAGGAGGCCGTCAAGAGAGGGA
AGCAACCGTATTTCTTGAAGGAAAAGGATGTTCGAAACTTGGAGATGAGG
GCCAAGTTTGAAGAACTGAAGAAGACGGGTGGCGTCAAAAGGTACATCCA
GAAGCGACGAAAACGCCTTGCTGGAAAAGATAAGAAGCTCCTGCCGAATC
GACGCCCTTTGTCAAACCCTGGTTCTGGATCATGA
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:1133792..1134526-

>Gchil7424.t1 ID=Gchil7424.t1|Name=Gchil7424.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000007_pilon:1133792..1134526- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATGAGTTCTACAGAACTGGTGCCACGAGGCTCAAGTAGGGAAGA
ACCAACGTTAGGAGAAGTTCTGCAGTCGAAAGAGAAATCCGCGAGAGGAA
AAGCTGAATACGCATCTCATTCAATACTCAGGAAACTCGCCCGTGGAATT
GAATTTGCACCGAGAAGCATCAAGGAACGCGGGAAAAAATCCAGACCACG
AGAAATATCATCTCGTGCCCCAGTTCCCGTCGGCCGAGAAAGATGTCTTG
GGATAGACAATGGAGCGCACCAGTCTCGCAGCCTGCGAAAATTTGATCCA
AGATTTGAGGAACATTGTGGAGACCTTCTTGAAGAACATGTGGAAAGGAA
CTATGCGTTTGTGCGCTCAATACAAAACTCAGAGAAGAAATCTTTGGAAG
AAAAAGTGAAGAAGAACCCAGAAGACTATGATGCTTCTCATGAGTTGAAA
AGCATGGAACAAAGCGAAATACGGCGAAACGCATTGCTTCGGAGACGAAA
CATCCTCTCAGCTTACAAAAAAAATGAAAAGGAGGCCGTCAAGAGAGGGA
AGCAACCGTATTTCTTGAAGGAAAAGGATGTTCGAAACTTGGAGATGAGG
GCCAAGTTTGAAGAACTGAAGAAGACGGGTGGCGTCAAAAGGTACATCCA
GAAGCGACGAAAACGCCTTGCTGGAAAAGATAAGAAGCTCCTGCCGAATC
GACGCCCTTTGTCAAACCCTGGTTCTGGATCATGA
back to top