Gchil7418.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7418.t1
Unique NameGchil7418.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1120571..1121248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003289257.1
PFAMsRas
Max annot lvl554915|Amoebozoa
KEGG koko:K06682
KEGG Pathwayko04111,map04111
Evalue8.94e-88
EggNOG OGsCOG1100@1|root,KOG1673@2759|Eukaryota,3X8M2@554915|Amoebozoa
DescriptionGtr1/RagA G protein conserved region
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7418Gchil7418Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1120571..1121248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7418.t1.stop1Gchil7418.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1120571..1120573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7418.t1.CDS1Gchil7418.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1120571..1121248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7418.t1.exon1Gchil7418.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1120571..1121248 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7418.t1.start1Gchil7418.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1121246..1121248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7418.t1Gchil7418.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1120571..1121248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7418.t1 ID=Gchil7418.t1|Name=Gchil7418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=226bp
MSASASNDDSKDTQQGSSQPGPSPTAGRMSKAKGPKNLQLKVGMLGDSYV
GKTSLMVKYVENKFDEDYIQTLGINFMEKIISMRERTVTFTIFDLGGGEN
EFNQMIPLVCADAAAILFMFDLTRRVTLRSIQEWYRQARGFNQTFIPFLV
GTKFDLFASLSMDKQRDMIAHARTFAKAMRSPLIFTSSSHSINVQKLFKI
VLSKRFNLKCNVPKMSNVGEPILEF*
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spliced messenger RNA

>Gchil7418.t1 ID=Gchil7418.t1|Name=Gchil7418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000007_pilon:1120571..1121248- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGTCGGCGAGCAATGATGATTCCAAGGACACACAACAGGGTTC
TAGTCAACCAGGCCCGTCCCCAACAGCTGGGCGCATGTCAAAGGCAAAAG
GGCCCAAGAATCTTCAGTTGAAGGTTGGAATGCTTGGAGATTCATACGTT
GGTAAGACGTCTCTGATGGTGAAGTATGTTGAAAACAAGTTCGACGAAGA
TTACATTCAGACGCTTGGAATCAATTTCATGGAGAAGATCATATCCATGC
GAGAAAGAACTGTGACGTTTACTATCTTTGATTTGGGTGGTGGTGAGAAT
GAATTTAATCAAATGATTCCTCTTGTTTGTGCTGATGCTGCTGCCATTCT
TTTTATGTTTGACCTAACCAGGCGAGTAACTCTGCGAAGTATTCAAGAAT
GGTATAGACAGGCACGAGGATTCAATCAAACTTTTATTCCATTCTTGGTT
GGTACGAAATTCGACTTGTTTGCAAGTCTTAGTATGGACAAGCAACGTGA
CATGATCGCTCATGCGAGAACTTTTGCAAAGGCTATGCGAAGTCCGCTCA
TTTTCACATCATCTTCACATTCTATAAACGTGCAAAAGTTGTTCAAGATT
GTTCTCAGCAAGAGATTCAATTTGAAGTGCAATGTTCCTAAAATGTCGAA
TGTGGGTGAACCAATCTTAGAGTTCTGA
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protein sequence of Gchil7418.t1

>Gchil7418.t1 ID=Gchil7418.t1|Name=Gchil7418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=226bp
MSASASNDDSKDTQQGSSQPGPSPTAGRMSKAKGPKNLQLKVGMLGDSYV
GKTSLMVKYVENKFDEDYIQTLGINFMEKIISMRERTVTFTIFDLGGGEN
EFNQMIPLVCADAAAILFMFDLTRRVTLRSIQEWYRQARGFNQTFIPFLV
GTKFDLFASLSMDKQRDMIAHARTFAKAMRSPLIFTSSSHSINVQKLFKI
VLSKRFNLKCNVPKMSNVGEPILEF*
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mRNA from alignment at tig00000007_pilon:1120571..1121248-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7418.t1 ID=Gchil7418.t1|Name=Gchil7418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000007_pilon:1120571..1121248- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGTCGGCGAGCAATGATGATTCCAAGGACACACAACAGGGTTC
TAGTCAACCAGGCCCGTCCCCAACAGCTGGGCGCATGTCAAAGGCAAAAG
GGCCCAAGAATCTTCAGTTGAAGGTTGGAATGCTTGGAGATTCATACGTT
GGTAAGACGTCTCTGATGGTGAAGTATGTTGAAAACAAGTTCGACGAAGA
TTACATTCAGACGCTTGGAATCAATTTCATGGAGAAGATCATATCCATGC
GAGAAAGAACTGTGACGTTTACTATCTTTGATTTGGGTGGTGGTGAGAAT
GAATTTAATCAAATGATTCCTCTTGTTTGTGCTGATGCTGCTGCCATTCT
TTTTATGTTTGACCTAACCAGGCGAGTAACTCTGCGAAGTATTCAAGAAT
GGTATAGACAGGCACGAGGATTCAATCAAACTTTTATTCCATTCTTGGTT
GGTACGAAATTCGACTTGTTTGCAAGTCTTAGTATGGACAAGCAACGTGA
CATGATCGCTCATGCGAGAACTTTTGCAAAGGCTATGCGAAGTCCGCTCA
TTTTCACATCATCTTCACATTCTATAAACGTGCAAAAGTTGTTCAAGATT
GTTCTCAGCAAGAGATTCAATTTGAAGTGCAATGTTCCTAAAATGTCGAA
TGTGGGTGAACCAATCTTAGAGTTCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1120571..1121248-

>Gchil7418.t1 ID=Gchil7418.t1|Name=Gchil7418.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000007_pilon:1120571..1121248- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCGTCGGCGAGCAATGATGATTCCAAGGACACACAACAGGGTTC
TAGTCAACCAGGCCCGTCCCCAACAGCTGGGCGCATGTCAAAGGCAAAAG
GGCCCAAGAATCTTCAGTTGAAGGTTGGAATGCTTGGAGATTCATACGTT
GGTAAGACGTCTCTGATGGTGAAGTATGTTGAAAACAAGTTCGACGAAGA
TTACATTCAGACGCTTGGAATCAATTTCATGGAGAAGATCATATCCATGC
GAGAAAGAACTGTGACGTTTACTATCTTTGATTTGGGTGGTGGTGAGAAT
GAATTTAATCAAATGATTCCTCTTGTTTGTGCTGATGCTGCTGCCATTCT
TTTTATGTTTGACCTAACCAGGCGAGTAACTCTGCGAAGTATTCAAGAAT
GGTATAGACAGGCACGAGGATTCAATCAAACTTTTATTCCATTCTTGGTT
GGTACGAAATTCGACTTGTTTGCAAGTCTTAGTATGGACAAGCAACGTGA
CATGATCGCTCATGCGAGAACTTTTGCAAAGGCTATGCGAAGTCCGCTCA
TTTTCACATCATCTTCACATTCTATAAACGTGCAAAAGTTGTTCAAGATT
GTTCTCAGCAAGAGATTCAATTTGAAGTGCAATGTTCCTAAAATGTCGAA
TGTGGGTGAACCAATCTTAGAGTTCTGA
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