Gchil7402.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7402.t1
Unique NameGchil7402.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:945024..946370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO99514
PFAMsPeptidase_M24
Max annot lvl3041|Chlorophyta
KEGG koko:K01265
Evalue1.21e-187
EggNOG OGsCOG0024@1|root,KOG2775@2759|Eukaryota,37JYE@33090|Viridiplantae,34H91@3041|Chlorophyta
EC3.4.11.18
DescriptionCotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)
COG categoryJ
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7402Gchil7402Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 945024..946370 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7402.t1.stop1Gchil7402.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 945024..945026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7402.t1.CDS1Gchil7402.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 945024..946370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7402.t1.exon1Gchil7402.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 945024..946370 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7402.t1.start1Gchil7402.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 946368..946370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7402.t1Gchil7402.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 945024..946370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7402.t1 ID=Gchil7402.t1|Name=Gchil7402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MGDTTVENPSLAEELSLLNVAKKSEYTVEQDNIENGHKPAEDFDGDVEAN
NVKKKKRKKKKKKKKPSNVEGENQENSETQTSLKQTDPPSIPVSSFYPRG
GFPVGELHEYFDANSYRTTSAEMRDRERIEEDLYDSVREAAEVHRQVRKY
MKTYIKPGVRLIDMCERLENANRAFVGANDGDLSRGIAFPTGCSLNHVAA
HYTPNKGDKTVLEYDDVMKVDFGTQINGRIIDCAWTVHFNPRYDPLVEGV
KAATEAGVKAAGIDVRLCDVGAAVQEVMESNEVELDGKVYPVKSIRNLHG
HSIGPYQIHAGKSVPIVRGGEQIKMEEGEFYAIETFGSTGKGFVVEDMEC
SHYMKDFNAPRVNLRSSKARSLLSTIDKNFGTLAFCRRFLDRLGEEKYLM
GLKALVDNGIVNPYPPLCDQKGCYTAQFEHTLVLKPTRKEVLSRGEDF*
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spliced messenger RNA

>Gchil7402.t1 ID=Gchil7402.t1|Name=Gchil7402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000007_pilon:945024..946370- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATACGACTGTTGAAAATCCGTCACTAGCTGAAGAACTGTCGCT
ATTAAACGTAGCCAAGAAATCTGAATATACCGTGGAACAGGACAATATTG
AGAACGGGCACAAACCAGCGGAAGATTTCGATGGGGATGTAGAGGCCAAT
AATGTGAAGAAGAAGAAGAGAAAGAAGAAAAAGAAGAAAAAGAAACCAAG
CAACGTCGAAGGAGAGAACCAGGAAAATTCAGAAACACAAACTTCATTGA
AACAAACGGATCCACCTTCCATTCCTGTGTCATCCTTCTACCCGAGAGGC
GGGTTTCCTGTTGGGGAGTTGCATGAATACTTTGACGCAAATTCGTATCG
AACTACTTCAGCTGAGATGCGCGATAGAGAGAGAATTGAAGAAGACTTGT
ATGATTCGGTGCGAGAAGCAGCGGAGGTGCATCGTCAAGTTAGAAAGTAT
ATGAAAACGTATATCAAGCCTGGTGTTCGACTAATTGATATGTGTGAACG
CCTAGAAAATGCCAATCGTGCCTTCGTTGGCGCAAACGATGGGGATTTGT
CTCGAGGGATCGCTTTTCCAACAGGATGTTCATTGAATCATGTCGCTGCG
CATTATACTCCGAACAAAGGAGACAAAACTGTTTTAGAATACGATGATGT
AATGAAAGTGGATTTCGGAACACAAATCAACGGGAGAATTATCGACTGCG
CATGGACCGTCCACTTCAACCCTAGGTATGACCCGCTTGTGGAGGGTGTC
AAGGCTGCCACAGAAGCCGGTGTAAAAGCTGCAGGCATAGATGTTCGGCT
GTGCGATGTTGGAGCAGCTGTTCAGGAAGTTATGGAAAGCAACGAAGTAG
AACTGGATGGGAAGGTTTATCCCGTCAAGTCTATCCGCAATCTTCATGGT
CACAGCATCGGCCCATACCAGATCCACGCTGGAAAGAGTGTACCCATCGT
GCGAGGGGGCGAGCAGATTAAAATGGAGGAAGGCGAATTCTATGCCATCG
AAACGTTTGGCTCTACTGGAAAAGGATTCGTCGTTGAGGATATGGAATGC
AGTCACTACATGAAAGACTTTAATGCTCCTCGAGTGAATTTGCGATCTAG
CAAGGCTCGCTCGTTACTTTCAACTATTGACAAAAACTTTGGAACATTGG
CTTTCTGCCGACGCTTCTTAGATCGACTTGGAGAAGAGAAATATCTTATG
GGTCTGAAGGCCCTAGTTGATAATGGAATTGTAAATCCTTATCCACCGCT
TTGCGATCAAAAGGGCTGTTACACCGCGCAATTCGAACATACGTTGGTCT
TGAAGCCAACCCGAAAAGAGGTTCTGTCTCGTGGTGAAGATTTCTGA
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protein sequence of Gchil7402.t1

>Gchil7402.t1 ID=Gchil7402.t1|Name=Gchil7402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MGDTTVENPSLAEELSLLNVAKKSEYTVEQDNIENGHKPAEDFDGDVEAN
NVKKKKRKKKKKKKKPSNVEGENQENSETQTSLKQTDPPSIPVSSFYPRG
GFPVGELHEYFDANSYRTTSAEMRDRERIEEDLYDSVREAAEVHRQVRKY
MKTYIKPGVRLIDMCERLENANRAFVGANDGDLSRGIAFPTGCSLNHVAA
HYTPNKGDKTVLEYDDVMKVDFGTQINGRIIDCAWTVHFNPRYDPLVEGV
KAATEAGVKAAGIDVRLCDVGAAVQEVMESNEVELDGKVYPVKSIRNLHG
HSIGPYQIHAGKSVPIVRGGEQIKMEEGEFYAIETFGSTGKGFVVEDMEC
SHYMKDFNAPRVNLRSSKARSLLSTIDKNFGTLAFCRRFLDRLGEEKYLM
GLKALVDNGIVNPYPPLCDQKGCYTAQFEHTLVLKPTRKEVLSRGEDF*
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mRNA from alignment at tig00000007_pilon:945024..946370-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7402.t1 ID=Gchil7402.t1|Name=Gchil7402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000007_pilon:945024..946370- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGATACGACTGTTGAAAATCCGTCACTAGCTGAAGAACTGTCGCT
ATTAAACGTAGCCAAGAAATCTGAATATACCGTGGAACAGGACAATATTG
AGAACGGGCACAAACCAGCGGAAGATTTCGATGGGGATGTAGAGGCCAAT
AATGTGAAGAAGAAGAAGAGAAAGAAGAAAAAGAAGAAAAAGAAACCAAG
CAACGTCGAAGGAGAGAACCAGGAAAATTCAGAAACACAAACTTCATTGA
AACAAACGGATCCACCTTCCATTCCTGTGTCATCCTTCTACCCGAGAGGC
GGGTTTCCTGTTGGGGAGTTGCATGAATACTTTGACGCAAATTCGTATCG
AACTACTTCAGCTGAGATGCGCGATAGAGAGAGAATTGAAGAAGACTTGT
ATGATTCGGTGCGAGAAGCAGCGGAGGTGCATCGTCAAGTTAGAAAGTAT
ATGAAAACGTATATCAAGCCTGGTGTTCGACTAATTGATATGTGTGAACG
CCTAGAAAATGCCAATCGTGCCTTCGTTGGCGCAAACGATGGGGATTTGT
CTCGAGGGATCGCTTTTCCAACAGGATGTTCATTGAATCATGTCGCTGCG
CATTATACTCCGAACAAAGGAGACAAAACTGTTTTAGAATACGATGATGT
AATGAAAGTGGATTTCGGAACACAAATCAACGGGAGAATTATCGACTGCG
CATGGACCGTCCACTTCAACCCTAGGTATGACCCGCTTGTGGAGGGTGTC
AAGGCTGCCACAGAAGCCGGTGTAAAAGCTGCAGGCATAGATGTTCGGCT
GTGCGATGTTGGAGCAGCTGTTCAGGAAGTTATGGAAAGCAACGAAGTAG
AACTGGATGGGAAGGTTTATCCCGTCAAGTCTATCCGCAATCTTCATGGT
CACAGCATCGGCCCATACCAGATCCACGCTGGAAAGAGTGTACCCATCGT
GCGAGGGGGCGAGCAGATTAAAATGGAGGAAGGCGAATTCTATGCCATCG
AAACGTTTGGCTCTACTGGAAAAGGATTCGTCGTTGAGGATATGGAATGC
AGTCACTACATGAAAGACTTTAATGCTCCTCGAGTGAATTTGCGATCTAG
CAAGGCTCGCTCGTTACTTTCAACTATTGACAAAAACTTTGGAACATTGG
CTTTCTGCCGACGCTTCTTAGATCGACTTGGAGAAGAGAAATATCTTATG
GGTCTGAAGGCCCTAGTTGATAATGGAATTGTAAATCCTTATCCACCGCT
TTGCGATCAAAAGGGCTGTTACACCGCGCAATTCGAACATACGTTGGTCT
TGAAGCCAACCCGAAAAGAGGTTCTGTCTCGTGGTGAAGATTTCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:945024..946370-

>Gchil7402.t1 ID=Gchil7402.t1|Name=Gchil7402.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000007_pilon:945024..946370- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGATACGACTGTTGAAAATCCGTCACTAGCTGAAGAACTGTCGCT
ATTAAACGTAGCCAAGAAATCTGAATATACCGTGGAACAGGACAATATTG
AGAACGGGCACAAACCAGCGGAAGATTTCGATGGGGATGTAGAGGCCAAT
AATGTGAAGAAGAAGAAGAGAAAGAAGAAAAAGAAGAAAAAGAAACCAAG
CAACGTCGAAGGAGAGAACCAGGAAAATTCAGAAACACAAACTTCATTGA
AACAAACGGATCCACCTTCCATTCCTGTGTCATCCTTCTACCCGAGAGGC
GGGTTTCCTGTTGGGGAGTTGCATGAATACTTTGACGCAAATTCGTATCG
AACTACTTCAGCTGAGATGCGCGATAGAGAGAGAATTGAAGAAGACTTGT
ATGATTCGGTGCGAGAAGCAGCGGAGGTGCATCGTCAAGTTAGAAAGTAT
ATGAAAACGTATATCAAGCCTGGTGTTCGACTAATTGATATGTGTGAACG
CCTAGAAAATGCCAATCGTGCCTTCGTTGGCGCAAACGATGGGGATTTGT
CTCGAGGGATCGCTTTTCCAACAGGATGTTCATTGAATCATGTCGCTGCG
CATTATACTCCGAACAAAGGAGACAAAACTGTTTTAGAATACGATGATGT
AATGAAAGTGGATTTCGGAACACAAATCAACGGGAGAATTATCGACTGCG
CATGGACCGTCCACTTCAACCCTAGGTATGACCCGCTTGTGGAGGGTGTC
AAGGCTGCCACAGAAGCCGGTGTAAAAGCTGCAGGCATAGATGTTCGGCT
GTGCGATGTTGGAGCAGCTGTTCAGGAAGTTATGGAAAGCAACGAAGTAG
AACTGGATGGGAAGGTTTATCCCGTCAAGTCTATCCGCAATCTTCATGGT
CACAGCATCGGCCCATACCAGATCCACGCTGGAAAGAGTGTACCCATCGT
GCGAGGGGGCGAGCAGATTAAAATGGAGGAAGGCGAATTCTATGCCATCG
AAACGTTTGGCTCTACTGGAAAAGGATTCGTCGTTGAGGATATGGAATGC
AGTCACTACATGAAAGACTTTAATGCTCCTCGAGTGAATTTGCGATCTAG
CAAGGCTCGCTCGTTACTTTCAACTATTGACAAAAACTTTGGAACATTGG
CTTTCTGCCGACGCTTCTTAGATCGACTTGGAGAAGAGAAATATCTTATG
GGTCTGAAGGCCCTAGTTGATAATGGAATTGTAAATCCTTATCCACCGCT
TTGCGATCAAAAGGGCTGTTACACCGCGCAATTCGAACATACGTTGGTCT
TGAAGCCAACCCGAAAAGAGGTTCTGTCTCGTGGTGAAGATTTCTGA
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