Gchil7396.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7396.t1
Unique NameGchil7396.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:850899..852191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50486
PFAMsMFS_1_like
Max annot lvl2759|Eukaryota
KEGG koko:K11367
Evalue3.58e-47
EggNOG OGsKOG3762@1|root,KOG3762@2759|Eukaryota
EC3.6.4.12
DescriptionMFS_1 like family
COG categoryL
BRITEko00000,ko01000,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7396Gchil7396Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 850899..852191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7396.t1.stop1Gchil7396.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 850899..850901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7396.t1.CDS1Gchil7396.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 850899..852191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7396.t1.exon1Gchil7396.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 850899..852191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7396.t1.start1Gchil7396.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 852189..852191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7396.t1Gchil7396.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 850899..852191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7396.t1 ID=Gchil7396.t1|Name=Gchil7396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MRLGWLYFGVMAVLAAPGRFTSVFLQAHGLSLSKVGILLAIQPICDLIAT
PFFCNYSDIHNNREETAMLLAIFSLFFFCCQIIALPGLDLIKGNQLFLFF
LAVRVLYGLVAAPAYALMNGTILLALKLRHGHKGHELMGHERLFGAVSWA
LVSLGIGLLLDIFSSSMIVVYVFSVVCTFSYVLCINAYVRNSKQSREENE
CSLLAVEENDDGNSLNLAECPSQRVTAVHFVKQLFSSDGLATSFFFNLIF
WEAAGMTLVTNLLFLFMQDELQSSNLQCGISVIITVMFEFPLFAKSPELL
SSFGTSGLAKLGASCFVLRAVMYSVAPNAWFVLLAEPLHGVTFALFCTAS
TAFISDRVPRELEATGQSMISVVTSLGRILGTVCGGYVMETYGSHLLYAG
ASIMVAIAIIAFHIVDCRSNRRCSPNLDYI*
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spliced messenger RNA

>Gchil7396.t1 ID=Gchil7396.t1|Name=Gchil7396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:850899..852191- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACTTGGATGGCTCTACTTCGGAGTAATGGCTGTTTTGGCGGCTCC
AGGGCGTTTTACGTCTGTGTTTCTTCAGGCCCACGGGCTCAGTCTGAGCA
AAGTTGGAATTCTACTCGCAATTCAACCCATTTGCGACTTGATAGCAACA
CCGTTCTTCTGTAACTATTCAGATATCCACAACAACAGGGAAGAGACAGC
TATGCTACTGGCCATTTTTTCTTTGTTCTTCTTCTGCTGTCAAATAATTG
CCCTTCCCGGTCTCGATTTAATTAAAGGTAATCAACTGTTTCTCTTTTTC
TTAGCTGTACGCGTCTTGTACGGGCTGGTCGCGGCTCCAGCTTATGCTCT
CATGAACGGTACCATATTGTTGGCTCTCAAACTACGACATGGTCACAAAG
GACACGAACTTATGGGGCATGAAAGGCTGTTTGGAGCCGTGAGCTGGGCG
TTAGTGTCGCTTGGAATAGGGCTGTTACTCGATATTTTCTCTTCTTCAAT
GATCGTGGTCTATGTTTTCTCTGTCGTATGCACGTTTTCATACGTTCTTT
GTATCAACGCATATGTCAGAAATTCAAAGCAGTCACGAGAAGAAAACGAG
TGTTCTTTGCTTGCTGTTGAAGAGAATGATGACGGTAACTCCCTCAACTT
AGCAGAGTGTCCAAGTCAGCGAGTGACTGCAGTCCACTTTGTGAAACAGC
TTTTTTCCTCTGATGGTCTAGCTACGTCGTTTTTTTTCAATCTTATCTTT
TGGGAAGCTGCTGGTATGACTTTGGTCACAAATCTTTTGTTCCTCTTCAT
GCAAGACGAGCTGCAGTCCAGCAACTTGCAATGCGGGATCAGCGTTATTA
TTACGGTCATGTTTGAGTTCCCCCTTTTCGCCAAATCACCGGAGTTATTA
TCCTCATTTGGGACTTCGGGTCTTGCCAAACTTGGAGCTTCATGTTTTGT
TCTCCGAGCAGTCATGTACTCCGTTGCCCCCAATGCGTGGTTTGTCCTCC
TTGCAGAACCTTTGCATGGAGTAACTTTCGCTCTGTTTTGTACTGCATCG
ACCGCGTTTATCTCAGATCGCGTTCCTCGCGAGCTAGAAGCTACTGGGCA
GTCCATGATTTCCGTGGTCACATCATTGGGAAGAATACTTGGGACTGTGT
GTGGGGGTTACGTCATGGAAACCTATGGGTCACACCTGTTGTACGCAGGA
GCGTCAATAATGGTAGCCATTGCAATAATCGCCTTCCATATTGTAGACTG
TCGCTCAAACCGCCGATGTTCACCGAATCTGGATTATATCTGA
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protein sequence of Gchil7396.t1

>Gchil7396.t1 ID=Gchil7396.t1|Name=Gchil7396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MRLGWLYFGVMAVLAAPGRFTSVFLQAHGLSLSKVGILLAIQPICDLIAT
PFFCNYSDIHNNREETAMLLAIFSLFFFCCQIIALPGLDLIKGNQLFLFF
LAVRVLYGLVAAPAYALMNGTILLALKLRHGHKGHELMGHERLFGAVSWA
LVSLGIGLLLDIFSSSMIVVYVFSVVCTFSYVLCINAYVRNSKQSREENE
CSLLAVEENDDGNSLNLAECPSQRVTAVHFVKQLFSSDGLATSFFFNLIF
WEAAGMTLVTNLLFLFMQDELQSSNLQCGISVIITVMFEFPLFAKSPELL
SSFGTSGLAKLGASCFVLRAVMYSVAPNAWFVLLAEPLHGVTFALFCTAS
TAFISDRVPRELEATGQSMISVVTSLGRILGTVCGGYVMETYGSHLLYAG
ASIMVAIAIIAFHIVDCRSNRRCSPNLDYI*
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mRNA from alignment at tig00000007_pilon:850899..852191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7396.t1 ID=Gchil7396.t1|Name=Gchil7396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:850899..852191- (Gracilaria chilensis NLEC103_M9 male)
ATGAGACTTGGATGGCTCTACTTCGGAGTAATGGCTGTTTTGGCGGCTCC
AGGGCGTTTTACGTCTGTGTTTCTTCAGGCCCACGGGCTCAGTCTGAGCA
AAGTTGGAATTCTACTCGCAATTCAACCCATTTGCGACTTGATAGCAACA
CCGTTCTTCTGTAACTATTCAGATATCCACAACAACAGGGAAGAGACAGC
TATGCTACTGGCCATTTTTTCTTTGTTCTTCTTCTGCTGTCAAATAATTG
CCCTTCCCGGTCTCGATTTAATTAAAGGTAATCAACTGTTTCTCTTTTTC
TTAGCTGTACGCGTCTTGTACGGGCTGGTCGCGGCTCCAGCTTATGCTCT
CATGAACGGTACCATATTGTTGGCTCTCAAACTACGACATGGTCACAAAG
GACACGAACTTATGGGGCATGAAAGGCTGTTTGGAGCCGTGAGCTGGGCG
TTAGTGTCGCTTGGAATAGGGCTGTTACTCGATATTTTCTCTTCTTCAAT
GATCGTGGTCTATGTTTTCTCTGTCGTATGCACGTTTTCATACGTTCTTT
GTATCAACGCATATGTCAGAAATTCAAAGCAGTCACGAGAAGAAAACGAG
TGTTCTTTGCTTGCTGTTGAAGAGAATGATGACGGTAACTCCCTCAACTT
AGCAGAGTGTCCAAGTCAGCGAGTGACTGCAGTCCACTTTGTGAAACAGC
TTTTTTCCTCTGATGGTCTAGCTACGTCGTTTTTTTTCAATCTTATCTTT
TGGGAAGCTGCTGGTATGACTTTGGTCACAAATCTTTTGTTCCTCTTCAT
GCAAGACGAGCTGCAGTCCAGCAACTTGCAATGCGGGATCAGCGTTATTA
TTACGGTCATGTTTGAGTTCCCCCTTTTCGCCAAATCACCGGAGTTATTA
TCCTCATTTGGGACTTCGGGTCTTGCCAAACTTGGAGCTTCATGTTTTGT
TCTCCGAGCAGTCATGTACTCCGTTGCCCCCAATGCGTGGTTTGTCCTCC
TTGCAGAACCTTTGCATGGAGTAACTTTCGCTCTGTTTTGTACTGCATCG
ACCGCGTTTATCTCAGATCGCGTTCCTCGCGAGCTAGAAGCTACTGGGCA
GTCCATGATTTCCGTGGTCACATCATTGGGAAGAATACTTGGGACTGTGT
GTGGGGGTTACGTCATGGAAACCTATGGGTCACACCTGTTGTACGCAGGA
GCGTCAATAATGGTAGCCATTGCAATAATCGCCTTCCATATTGTAGACTG
TCGCTCAAACCGCCGATGTTCACCGAATCTGGATTATATCTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:850899..852191-

>Gchil7396.t1 ID=Gchil7396.t1|Name=Gchil7396.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000007_pilon:850899..852191- (Gracilaria chilensis NLEC103_M9 male)
ATGAGACTTGGATGGCTCTACTTCGGAGTAATGGCTGTTTTGGCGGCTCC
AGGGCGTTTTACGTCTGTGTTTCTTCAGGCCCACGGGCTCAGTCTGAGCA
AAGTTGGAATTCTACTCGCAATTCAACCCATTTGCGACTTGATAGCAACA
CCGTTCTTCTGTAACTATTCAGATATCCACAACAACAGGGAAGAGACAGC
TATGCTACTGGCCATTTTTTCTTTGTTCTTCTTCTGCTGTCAAATAATTG
CCCTTCCCGGTCTCGATTTAATTAAAGGTAATCAACTGTTTCTCTTTTTC
TTAGCTGTACGCGTCTTGTACGGGCTGGTCGCGGCTCCAGCTTATGCTCT
CATGAACGGTACCATATTGTTGGCTCTCAAACTACGACATGGTCACAAAG
GACACGAACTTATGGGGCATGAAAGGCTGTTTGGAGCCGTGAGCTGGGCG
TTAGTGTCGCTTGGAATAGGGCTGTTACTCGATATTTTCTCTTCTTCAAT
GATCGTGGTCTATGTTTTCTCTGTCGTATGCACGTTTTCATACGTTCTTT
GTATCAACGCATATGTCAGAAATTCAAAGCAGTCACGAGAAGAAAACGAG
TGTTCTTTGCTTGCTGTTGAAGAGAATGATGACGGTAACTCCCTCAACTT
AGCAGAGTGTCCAAGTCAGCGAGTGACTGCAGTCCACTTTGTGAAACAGC
TTTTTTCCTCTGATGGTCTAGCTACGTCGTTTTTTTTCAATCTTATCTTT
TGGGAAGCTGCTGGTATGACTTTGGTCACAAATCTTTTGTTCCTCTTCAT
GCAAGACGAGCTGCAGTCCAGCAACTTGCAATGCGGGATCAGCGTTATTA
TTACGGTCATGTTTGAGTTCCCCCTTTTCGCCAAATCACCGGAGTTATTA
TCCTCATTTGGGACTTCGGGTCTTGCCAAACTTGGAGCTTCATGTTTTGT
TCTCCGAGCAGTCATGTACTCCGTTGCCCCCAATGCGTGGTTTGTCCTCC
TTGCAGAACCTTTGCATGGAGTAACTTTCGCTCTGTTTTGTACTGCATCG
ACCGCGTTTATCTCAGATCGCGTTCCTCGCGAGCTAGAAGCTACTGGGCA
GTCCATGATTTCCGTGGTCACATCATTGGGAAGAATACTTGGGACTGTGT
GTGGGGGTTACGTCATGGAAACCTATGGGTCACACCTGTTGTACGCAGGA
GCGTCAATAATGGTAGCCATTGCAATAATCGCCTTCCATATTGTAGACTG
TCGCTCAAACCGCCGATGTTCACCGAATCTGGATTATATCTGA
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