Gchil7387.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7387.t1
Unique NameGchil7387.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length769
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:828949..831255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000023595
PFAMsSel1
Max annot lvl121069|Pythiales
Evalue9.56e-31
EggNOG OGsCOG0790@1|root,KOG1550@2759|Eukaryota,1MARA@121069|Pythiales
DescriptionSel-1 family protein. Source PGD
COG categoryMOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7387Gchil7387Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 828949..831255 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7387.t1.stop1Gchil7387.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 828949..828951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7387.t1.CDS1Gchil7387.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 828949..831255 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7387.t1.exon1Gchil7387.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 828949..831255 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7387.t1.start1Gchil7387.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 831253..831255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7387.t1Gchil7387.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 828949..831255 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7387.t1 ID=Gchil7387.t1|Name=Gchil7387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=769bp
MALAARPAPHLHLRRRVLFVLLLVAALLAPRVRAHRPPVPARNQYVAVFR
GHNFHPPPLHVLVNGIAAPHVLFHNHTVISFVVPTHVVHDPVLFDASFVH
ITVGHRNLKLPLTALRRALVEVHDYDSYLARVLAEQTDQTDHNQLTPQQQ
PQQQQQQQQQQQQQQLHAQQTPPHLLPHFKALRNPFTPANQLASAYTALL
NQVNAVNTSSGIHAVAVATLSHVPNSPLVSHEAVRLLRLAAHNGDPHAHA
ELAFMYATGIRHYLIPKHQPPALLHWTIAAEAGSLYASMALAHRHHFALS
VSEDCPRAAQLYKMVANLTASPSSTTLRILLPSLLMPSPRRRLRDQNSSP
PSDEFVQYFERAASRGDPIAQVELAKLIYFRHDASERDVVRATTLFKNAA
RAGRLDAHALLGFIHLNAGHNATAIQHFTAAANRGEPNSLHALGFASLHG
IGGPKNATAAASFFKLAVEQKHPDAFYNLAYMYDEGIGVPKSPLKAVSCL
TAAATLDHIQASHQLALRYLAGEPPVEYNCMEAVSLLKKVAESGVWHDYI
DTAGRLHEKGLYAQALYRYLKAAHAGLEVAQYNAGFMYEKGTVLDRGFSA
TSLSRPELVRNAIEMYSMSAAQGDVPSMIRIGDLAFAEMRDYPRAAAAYD
KAARRESAEAHFNLGWMHARGYGMNADKHIAKRYFDNAKAIDTDAWLPST
IAIFGLKHYEIVFGGLALLSSIYDEYSRYISDILTVTVLLGVLVLVVNAR
QRRLLRLHRDEGIEGDVQ*
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spliced messenger RNA

>Gchil7387.t1 ID=Gchil7387.t1|Name=Gchil7387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000007_pilon:828949..831255- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTGCCGCACGCCCCGCGCCGCACCTCCACCTGCGTCGTCGCGT
GCTCTTCGTGCTGCTGCTCGTCGCTGCGCTACTCGCCCCGCGTGTACGCG
CACACCGACCGCCCGTCCCCGCCCGCAACCAGTACGTCGCCGTCTTTCGA
GGCCACAACTTCCACCCGCCCCCGCTCCACGTGCTTGTCAACGGCATCGC
CGCCCCGCACGTTCTCTTCCACAACCATACCGTCATTTCCTTCGTTGTCC
CCACCCACGTCGTCCACGACCCCGTTCTCTTCGACGCTTCCTTCGTCCAC
ATCACCGTCGGTCACCGCAATCTCAAGCTCCCGCTCACTGCCTTGCGCCG
CGCCCTTGTCGAGGTTCACGATTATGACTCGTACCTCGCCCGCGTTCTCG
CCGAGCAGACCGACCAGACCGACCACAACCAACTAACACCACAACAGCAA
CCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTCCA
CGCACAACAGACGCCTCCCCACCTGCTCCCCCACTTCAAAGCCCTGCGCA
ACCCCTTCACCCCCGCCAACCAACTCGCCTCCGCCTACACAGCCCTGCTC
AACCAAGTCAACGCCGTCAACACCTCCTCCGGCATTCATGCAGTCGCCGT
CGCAACCCTCTCTCACGTCCCAAACAGCCCCCTCGTCTCCCACGAAGCCG
TCCGCCTGCTCAGACTCGCAGCCCACAACGGCGATCCGCACGCCCATGCT
GAGCTCGCCTTCATGTACGCCACCGGCATCCGACACTATCTAATTCCCAA
ACACCAGCCCCCAGCCCTGCTGCACTGGACCATCGCCGCCGAGGCCGGTT
CGCTGTACGCCTCCATGGCGCTTGCACACCGCCACCATTTCGCACTCTCT
GTTTCTGAAGACTGTCCGCGCGCAGCACAACTGTATAAAATGGTGGCCAA
TCTAACTGCCTCACCCTCTTCCACCACTCTGCGCATCTTGCTGCCCTCGC
TTTTAATGCCTTCGCCCCGGAGAAGACTGCGCGATCAAAACTCTTCCCCG
CCTTCTGACGAATTTGTACAATACTTTGAACGCGCCGCCAGCAGGGGCGA
CCCCATCGCACAGGTTGAGCTTGCCAAACTAATCTACTTTAGACACGACG
CTTCCGAGCGAGATGTGGTCCGCGCTACCACCCTCTTCAAAAATGCCGCT
CGGGCTGGTAGACTGGACGCCCACGCCCTGCTGGGTTTCATCCACCTCAA
CGCTGGTCATAATGCCACCGCCATCCAACATTTTACCGCCGCTGCCAATC
GCGGGGAGCCCAACTCCCTGCATGCGCTGGGATTTGCTTCTCTTCATGGC
ATTGGTGGGCCGAAGAACGCCACCGCTGCCGCCTCCTTTTTCAAACTGGC
CGTCGAGCAAAAGCACCCGGACGCCTTTTACAATCTTGCCTACATGTACG
ACGAAGGCATTGGAGTGCCAAAGTCGCCCTTGAAAGCTGTTTCTTGTCTT
ACCGCCGCCGCCACCTTGGACCACATTCAGGCCTCGCACCAGCTCGCTTT
GCGGTACCTGGCGGGCGAACCGCCTGTCGAGTACAACTGCATGGAGGCCG
TTTCCCTCCTGAAAAAAGTCGCCGAGTCAGGCGTGTGGCACGATTACATA
GACACCGCTGGTCGACTGCACGAGAAGGGCCTGTATGCGCAGGCGCTCTA
TCGCTACCTCAAAGCGGCACATGCAGGTCTCGAAGTTGCGCAGTACAACG
CCGGCTTCATGTATGAAAAGGGAACCGTTCTGGATCGCGGCTTTTCGGCT
ACCTCCTTGTCCAGGCCAGAGCTTGTTCGCAATGCCATTGAGATGTATTC
CATGTCGGCCGCCCAAGGCGACGTCCCTAGCATGATTCGCATCGGCGACT
TGGCGTTTGCCGAGATGCGCGACTATCCGCGAGCCGCCGCTGCATATGAC
AAGGCTGCTCGGCGAGAGAGTGCCGAAGCGCACTTCAACCTTGGCTGGAT
GCATGCCAGAGGGTACGGTATGAATGCCGACAAACACATCGCCAAGCGCT
ACTTTGACAATGCGAAGGCCATCGATACGGATGCGTGGCTCCCCTCTACG
ATTGCCATTTTTGGACTGAAACACTATGAGATTGTGTTTGGTGGCCTCGC
CTTGCTCTCTAGCATTTATGACGAGTACAGTCGATACATTTCCGATATCC
TGACAGTCACTGTGTTGTTGGGAGTGCTGGTTCTTGTCGTAAATGCTCGG
CAAAGACGGCTACTGAGATTACATCGGGATGAAGGTATCGAAGGAGATGT
TCAATAA
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protein sequence of Gchil7387.t1

>Gchil7387.t1 ID=Gchil7387.t1|Name=Gchil7387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=769bp
MALAARPAPHLHLRRRVLFVLLLVAALLAPRVRAHRPPVPARNQYVAVFR
GHNFHPPPLHVLVNGIAAPHVLFHNHTVISFVVPTHVVHDPVLFDASFVH
ITVGHRNLKLPLTALRRALVEVHDYDSYLARVLAEQTDQTDHNQLTPQQQ
PQQQQQQQQQQQQQQLHAQQTPPHLLPHFKALRNPFTPANQLASAYTALL
NQVNAVNTSSGIHAVAVATLSHVPNSPLVSHEAVRLLRLAAHNGDPHAHA
ELAFMYATGIRHYLIPKHQPPALLHWTIAAEAGSLYASMALAHRHHFALS
VSEDCPRAAQLYKMVANLTASPSSTTLRILLPSLLMPSPRRRLRDQNSSP
PSDEFVQYFERAASRGDPIAQVELAKLIYFRHDASERDVVRATTLFKNAA
RAGRLDAHALLGFIHLNAGHNATAIQHFTAAANRGEPNSLHALGFASLHG
IGGPKNATAAASFFKLAVEQKHPDAFYNLAYMYDEGIGVPKSPLKAVSCL
TAAATLDHIQASHQLALRYLAGEPPVEYNCMEAVSLLKKVAESGVWHDYI
DTAGRLHEKGLYAQALYRYLKAAHAGLEVAQYNAGFMYEKGTVLDRGFSA
TSLSRPELVRNAIEMYSMSAAQGDVPSMIRIGDLAFAEMRDYPRAAAAYD
KAARRESAEAHFNLGWMHARGYGMNADKHIAKRYFDNAKAIDTDAWLPST
IAIFGLKHYEIVFGGLALLSSIYDEYSRYISDILTVTVLLGVLVLVVNAR
QRRLLRLHRDEGIEGDVQ*
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mRNA from alignment at tig00000007_pilon:828949..831255-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7387.t1 ID=Gchil7387.t1|Name=Gchil7387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000007_pilon:828949..831255- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTTGCCGCACGCCCCGCGCCGCACCTCCACCTGCGTCGTCGCGT
GCTCTTCGTGCTGCTGCTCGTCGCTGCGCTACTCGCCCCGCGTGTACGCG
CACACCGACCGCCCGTCCCCGCCCGCAACCAGTACGTCGCCGTCTTTCGA
GGCCACAACTTCCACCCGCCCCCGCTCCACGTGCTTGTCAACGGCATCGC
CGCCCCGCACGTTCTCTTCCACAACCATACCGTCATTTCCTTCGTTGTCC
CCACCCACGTCGTCCACGACCCCGTTCTCTTCGACGCTTCCTTCGTCCAC
ATCACCGTCGGTCACCGCAATCTCAAGCTCCCGCTCACTGCCTTGCGCCG
CGCCCTTGTCGAGGTTCACGATTATGACTCGTACCTCGCCCGCGTTCTCG
CCGAGCAGACCGACCAGACCGACCACAACCAACTAACACCACAACAGCAA
CCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTCCA
CGCACAACAGACGCCTCCCCACCTGCTCCCCCACTTCAAAGCCCTGCGCA
ACCCCTTCACCCCCGCCAACCAACTCGCCTCCGCCTACACAGCCCTGCTC
AACCAAGTCAACGCCGTCAACACCTCCTCCGGCATTCATGCAGTCGCCGT
CGCAACCCTCTCTCACGTCCCAAACAGCCCCCTCGTCTCCCACGAAGCCG
TCCGCCTGCTCAGACTCGCAGCCCACAACGGCGATCCGCACGCCCATGCT
GAGCTCGCCTTCATGTACGCCACCGGCATCCGACACTATCTAATTCCCAA
ACACCAGCCCCCAGCCCTGCTGCACTGGACCATCGCCGCCGAGGCCGGTT
CGCTGTACGCCTCCATGGCGCTTGCACACCGCCACCATTTCGCACTCTCT
GTTTCTGAAGACTGTCCGCGCGCAGCACAACTGTATAAAATGGTGGCCAA
TCTAACTGCCTCACCCTCTTCCACCACTCTGCGCATCTTGCTGCCCTCGC
TTTTAATGCCTTCGCCCCGGAGAAGACTGCGCGATCAAAACTCTTCCCCG
CCTTCTGACGAATTTGTACAATACTTTGAACGCGCCGCCAGCAGGGGCGA
CCCCATCGCACAGGTTGAGCTTGCCAAACTAATCTACTTTAGACACGACG
CTTCCGAGCGAGATGTGGTCCGCGCTACCACCCTCTTCAAAAATGCCGCT
CGGGCTGGTAGACTGGACGCCCACGCCCTGCTGGGTTTCATCCACCTCAA
CGCTGGTCATAATGCCACCGCCATCCAACATTTTACCGCCGCTGCCAATC
GCGGGGAGCCCAACTCCCTGCATGCGCTGGGATTTGCTTCTCTTCATGGC
ATTGGTGGGCCGAAGAACGCCACCGCTGCCGCCTCCTTTTTCAAACTGGC
CGTCGAGCAAAAGCACCCGGACGCCTTTTACAATCTTGCCTACATGTACG
ACGAAGGCATTGGAGTGCCAAAGTCGCCCTTGAAAGCTGTTTCTTGTCTT
ACCGCCGCCGCCACCTTGGACCACATTCAGGCCTCGCACCAGCTCGCTTT
GCGGTACCTGGCGGGCGAACCGCCTGTCGAGTACAACTGCATGGAGGCCG
TTTCCCTCCTGAAAAAAGTCGCCGAGTCAGGCGTGTGGCACGATTACATA
GACACCGCTGGTCGACTGCACGAGAAGGGCCTGTATGCGCAGGCGCTCTA
TCGCTACCTCAAAGCGGCACATGCAGGTCTCGAAGTTGCGCAGTACAACG
CCGGCTTCATGTATGAAAAGGGAACCGTTCTGGATCGCGGCTTTTCGGCT
ACCTCCTTGTCCAGGCCAGAGCTTGTTCGCAATGCCATTGAGATGTATTC
CATGTCGGCCGCCCAAGGCGACGTCCCTAGCATGATTCGCATCGGCGACT
TGGCGTTTGCCGAGATGCGCGACTATCCGCGAGCCGCCGCTGCATATGAC
AAGGCTGCTCGGCGAGAGAGTGCCGAAGCGCACTTCAACCTTGGCTGGAT
GCATGCCAGAGGGTACGGTATGAATGCCGACAAACACATCGCCAAGCGCT
ACTTTGACAATGCGAAGGCCATCGATACGGATGCGTGGCTCCCCTCTACG
ATTGCCATTTTTGGACTGAAACACTATGAGATTGTGTTTGGTGGCCTCGC
CTTGCTCTCTAGCATTTATGACGAGTACAGTCGATACATTTCCGATATCC
TGACAGTCACTGTGTTGTTGGGAGTGCTGGTTCTTGTCGTAAATGCTCGG
CAAAGACGGCTACTGAGATTACATCGGGATGAAGGTATCGAAGGAGATGT
TCAATAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:828949..831255-

>Gchil7387.t1 ID=Gchil7387.t1|Name=Gchil7387.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2307bp|location=Sequence derived from alignment at tig00000007_pilon:828949..831255- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTTGCCGCACGCCCCGCGCCGCACCTCCACCTGCGTCGTCGCGT
GCTCTTCGTGCTGCTGCTCGTCGCTGCGCTACTCGCCCCGCGTGTACGCG
CACACCGACCGCCCGTCCCCGCCCGCAACCAGTACGTCGCCGTCTTTCGA
GGCCACAACTTCCACCCGCCCCCGCTCCACGTGCTTGTCAACGGCATCGC
CGCCCCGCACGTTCTCTTCCACAACCATACCGTCATTTCCTTCGTTGTCC
CCACCCACGTCGTCCACGACCCCGTTCTCTTCGACGCTTCCTTCGTCCAC
ATCACCGTCGGTCACCGCAATCTCAAGCTCCCGCTCACTGCCTTGCGCCG
CGCCCTTGTCGAGGTTCACGATTATGACTCGTACCTCGCCCGCGTTCTCG
CCGAGCAGACCGACCAGACCGACCACAACCAACTAACACCACAACAGCAA
CCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACTCCA
CGCACAACAGACGCCTCCCCACCTGCTCCCCCACTTCAAAGCCCTGCGCA
ACCCCTTCACCCCCGCCAACCAACTCGCCTCCGCCTACACAGCCCTGCTC
AACCAAGTCAACGCCGTCAACACCTCCTCCGGCATTCATGCAGTCGCCGT
CGCAACCCTCTCTCACGTCCCAAACAGCCCCCTCGTCTCCCACGAAGCCG
TCCGCCTGCTCAGACTCGCAGCCCACAACGGCGATCCGCACGCCCATGCT
GAGCTCGCCTTCATGTACGCCACCGGCATCCGACACTATCTAATTCCCAA
ACACCAGCCCCCAGCCCTGCTGCACTGGACCATCGCCGCCGAGGCCGGTT
CGCTGTACGCCTCCATGGCGCTTGCACACCGCCACCATTTCGCACTCTCT
GTTTCTGAAGACTGTCCGCGCGCAGCACAACTGTATAAAATGGTGGCCAA
TCTAACTGCCTCACCCTCTTCCACCACTCTGCGCATCTTGCTGCCCTCGC
TTTTAATGCCTTCGCCCCGGAGAAGACTGCGCGATCAAAACTCTTCCCCG
CCTTCTGACGAATTTGTACAATACTTTGAACGCGCCGCCAGCAGGGGCGA
CCCCATCGCACAGGTTGAGCTTGCCAAACTAATCTACTTTAGACACGACG
CTTCCGAGCGAGATGTGGTCCGCGCTACCACCCTCTTCAAAAATGCCGCT
CGGGCTGGTAGACTGGACGCCCACGCCCTGCTGGGTTTCATCCACCTCAA
CGCTGGTCATAATGCCACCGCCATCCAACATTTTACCGCCGCTGCCAATC
GCGGGGAGCCCAACTCCCTGCATGCGCTGGGATTTGCTTCTCTTCATGGC
ATTGGTGGGCCGAAGAACGCCACCGCTGCCGCCTCCTTTTTCAAACTGGC
CGTCGAGCAAAAGCACCCGGACGCCTTTTACAATCTTGCCTACATGTACG
ACGAAGGCATTGGAGTGCCAAAGTCGCCCTTGAAAGCTGTTTCTTGTCTT
ACCGCCGCCGCCACCTTGGACCACATTCAGGCCTCGCACCAGCTCGCTTT
GCGGTACCTGGCGGGCGAACCGCCTGTCGAGTACAACTGCATGGAGGCCG
TTTCCCTCCTGAAAAAAGTCGCCGAGTCAGGCGTGTGGCACGATTACATA
GACACCGCTGGTCGACTGCACGAGAAGGGCCTGTATGCGCAGGCGCTCTA
TCGCTACCTCAAAGCGGCACATGCAGGTCTCGAAGTTGCGCAGTACAACG
CCGGCTTCATGTATGAAAAGGGAACCGTTCTGGATCGCGGCTTTTCGGCT
ACCTCCTTGTCCAGGCCAGAGCTTGTTCGCAATGCCATTGAGATGTATTC
CATGTCGGCCGCCCAAGGCGACGTCCCTAGCATGATTCGCATCGGCGACT
TGGCGTTTGCCGAGATGCGCGACTATCCGCGAGCCGCCGCTGCATATGAC
AAGGCTGCTCGGCGAGAGAGTGCCGAAGCGCACTTCAACCTTGGCTGGAT
GCATGCCAGAGGGTACGGTATGAATGCCGACAAACACATCGCCAAGCGCT
ACTTTGACAATGCGAAGGCCATCGATACGGATGCGTGGCTCCCCTCTACG
ATTGCCATTTTTGGACTGAAACACTATGAGATTGTGTTTGGTGGCCTCGC
CTTGCTCTCTAGCATTTATGACGAGTACAGTCGATACATTTCCGATATCC
TGACAGTCACTGTGTTGTTGGGAGTGCTGGTTCTTGTCGTAAATGCTCGG
CAAAGACGGCTACTGAGATTACATCGGGATGAAGGTATCGAAGGAGATGT
TCAATAA
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