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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 3702.AT1G65040.2 |
| PFAMs | zf-RING_2 |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K10601 |
| KEGG Pathway | ko04120,ko04141,map04120,map04141 |
| KEGG Module | M00403 |
| GOs | GO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0000836,GO:0002020,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0030968,GO:0031984,GO:0032446,GO:0032991,GO:0033554,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036513,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051603,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070085,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:0071944,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234,GO:1990381 |
| Evalue | 2.19e-73 |
| EggNOG OGs | COG5243@1|root,KOG0802@2759|Eukaryota,37I7G@33090|Viridiplantae,3G92U@35493|Streptophyta,3HNY0@3699|Brassicales |
| EC | 2.3.2.27 |
| Description | E3 ubiquitin-protein ligase synoviolin-like |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil7384.t1 ID=Gchil7384.t1|Name=Gchil7384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=751bp MALVSILLIWRITQLIFLGPLRFREVERLQLRARDAIIEYLFALSVFRDD FNTRFVAFIMTVLLLKSLHWLAKDRTDYLEEQLRCPLRTHIRLVGLLVLL AFLDVFLAAFCIQKTVQSNGRSMFVLFSFEFTLLAIELTGNVFQYIFFLI DQGMDGRWGSKGVFSFYAELLCDLSTLTIYIVFFIYVQIYYSFPYHIIRE FYVTLSKFQRKCADFLRYRRVVANMHQVVQVVTEEELQQGDRTCIICREE MESAIKLGCGHVFHRRCLENWLKRQLSCPTCRATIDVNRNASRNQERGAN HNANANRPPQPNAAAQPANSNRPQAQTQADQPADRGPQPPHQQPLAQHAG VPRAAQNDNIADGGARLLHFANQWFNQVMNEAGVRPQPNAQNPQPPNPNN AHANHHHHHHHHHHHHANPIQEPNRQMTPQPNQQQAQQAQHPNAFLNYPF LPGPNAIAHMQLRARRRGALAGIQQYQPIYRVQFPPLNNAPNTANQAPSQ NANLATQNATPASGVSEQAGVQNDASASNLSNAPQQHVRGSSSSTSSASA SASASNQVASSYTGPAASVAHASPSATEIASAPPQVARAGQIGGIMARNF AMQTGLNSQLGAGTGAQTLPLERLFEIQRHIEVLRSEVQNLVLHATEAQL SAMESEEEAQNSGQASSEISSHNRAAAGAASSESVVTPHAVVQDSGARHE QVEVGGRGGGSASSAGGAGGGRQGRSEEEDSEAQRIRRRRIEFLERLNRS * back to topspliced messenger RNA >Gchil7384.t1 ID=Gchil7384.t1|Name=Gchil7384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2253bp|location=Sequence derived from alignment at tig00000007_pilon:803660..805912+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGCTTGTGTCAATACTACTAATCTGGCGTATTACGCAACTAATTTT CCTCGGCCCTCTACGTTTCAGGGAAGTGGAACGGTTACAGCTTCGTGCTC GAGATGCTATCATCGAATATCTATTTGCTCTCTCTGTGTTCCGCGATGAT TTTAACACTCGCTTTGTGGCGTTCATCATGACTGTTTTGCTTCTGAAGAG TTTACATTGGCTGGCCAAGGACCGAACAGACTATCTAGAAGAACAGCTCC GATGTCCACTTCGCACTCACATCCGCCTCGTTGGTCTTCTGGTGCTTCTT GCGTTCCTTGACGTGTTTCTTGCGGCATTTTGTATCCAAAAGACTGTACA AAGCAACGGGCGGTCCATGTTTGTTCTGTTTTCATTTGAATTTACTCTGC TCGCCATCGAGCTCACTGGGAACGTTTTCCAGTACATTTTCTTTCTCATT GACCAAGGAATGGATGGGCGTTGGGGATCGAAGGGCGTATTCTCCTTTTA CGCCGAGCTGTTGTGCGACTTGTCAACGCTTACTATATATATTGTGTTCT TCATCTATGTGCAGATTTACTATTCGTTCCCGTACCATATCATTCGCGAG TTCTACGTGACGCTGAGCAAGTTCCAACGCAAGTGTGCGGATTTCCTTCG CTATCGTCGCGTGGTGGCAAATATGCACCAAGTCGTGCAAGTAGTGACGG AGGAAGAGCTTCAGCAAGGAGACCGCACTTGTATCATCTGTCGAGAGGAA ATGGAGTCGGCTATCAAGCTGGGGTGCGGGCACGTGTTTCATCGTCGATG CCTTGAAAACTGGCTCAAACGCCAACTCAGCTGCCCGACTTGCAGGGCTA CCATTGATGTGAACCGCAACGCGTCGCGAAATCAAGAGCGTGGCGCAAAT CACAACGCAAACGCAAATCGACCACCGCAGCCAAATGCCGCTGCGCAGCC TGCCAACTCGAATCGACCCCAAGCGCAAACTCAAGCGGACCAGCCTGCCG ATCGCGGACCACAGCCGCCTCATCAACAACCGTTAGCGCAACACGCTGGT GTGCCCCGTGCGGCCCAAAACGATAACATCGCCGACGGCGGCGCTCGTTT GCTTCACTTTGCAAACCAATGGTTTAACCAAGTTATGAATGAAGCCGGCG TTCGTCCTCAGCCCAATGCTCAAAACCCACAGCCGCCAAACCCTAACAAT GCACATGCTAatcatcaccatcatcatcatcaccatcaccatcaccaCGC AAATCCCATTCAGGAACCGAATCGGCAAATGACCCCACAGCCAAACCAGC AACAAGCGCAGCAGGCCCAACATCCGAACGCGTTCTTGAACTACCCGTTT CTCCCCGGACCAAACGCAATTGCACACATGCAGCTTCGTGCACGTCGCCG CGGCGCACTGGCCGGAATTCAACAATACCAACCCATATATCGCGTCCAAT TTCCGCCGTTGAACAATGCTCCCAATACGGCAAATCAAGCTCCGTCTCAG AATGCCAACCTAGCCACACAGAACGCCACACCCGCTTCTGGCGTATCAGA ACAGGCAGGCGTGCAAAACGATGCAAGCGCTTCCAATCTGTCTAATGCAC CTCAGCAACACGTCAGGGGCTCTTCATCGTCAACTTCGTCTGCCTCTGCC TCTGCCTCTGCTTCAAACCAAGTGGCAAGTTCCTATACAGGCCCTGCTGC CAGTGTTGCACACGCGAGCCCTTCTGCGACGGAAATCGCTTCTGCGCCCC CGCAAGTAGCACGGGCAGGCCAGATTGGCGGAATAATGGCGAGGAACTTC GCCATGCAGACGGGTTTGAATTCACAACTTGGCGCGGGCACCGGGGCGCA GACTCTGCCCTTGGAGCGCTTGTTTGAAATTCAGAGACACATCGAGGTTT TGCGAAGCGAGGTGCAGAATTTGGTCCTTCACGCCACCGAGGCGCAACTG AGTGCCATGGAGAGTGAAGAAGAAGCACAGAACAGCGGTCAAGCGTCAAG CGAAATTTCATCCCATAATCGTGCTGCTGCCGGCGCCGCCAGCTCGGAGA GTGTGGTGACGCCGCACGCAGTTGTGCAGGACAGTGGGGCTCGACATGAA CAGGTTGAAGTGGGTGGGCGAGGAGGCGGAAGCGCGTCCTCGGCGGGAGG AGCTGGGGGCGGTCGTCAAGGGAGAAGTGAGGAAGAAGACTCGGAAGCAC AAAGAATCCGTCGACGGAGAATTGAATTCTTGGAGCGATTAAATCGAAGT TAG back to topprotein sequence of Gchil7384.t1 >Gchil7384.t1 ID=Gchil7384.t1|Name=Gchil7384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=751bp
MALVSILLIWRITQLIFLGPLRFREVERLQLRARDAIIEYLFALSVFRDD FNTRFVAFIMTVLLLKSLHWLAKDRTDYLEEQLRCPLRTHIRLVGLLVLL AFLDVFLAAFCIQKTVQSNGRSMFVLFSFEFTLLAIELTGNVFQYIFFLI DQGMDGRWGSKGVFSFYAELLCDLSTLTIYIVFFIYVQIYYSFPYHIIRE FYVTLSKFQRKCADFLRYRRVVANMHQVVQVVTEEELQQGDRTCIICREE MESAIKLGCGHVFHRRCLENWLKRQLSCPTCRATIDVNRNASRNQERGAN HNANANRPPQPNAAAQPANSNRPQAQTQADQPADRGPQPPHQQPLAQHAG VPRAAQNDNIADGGARLLHFANQWFNQVMNEAGVRPQPNAQNPQPPNPNN AHANHHHHHHHHHHHHANPIQEPNRQMTPQPNQQQAQQAQHPNAFLNYPF LPGPNAIAHMQLRARRRGALAGIQQYQPIYRVQFPPLNNAPNTANQAPSQ NANLATQNATPASGVSEQAGVQNDASASNLSNAPQQHVRGSSSSTSSASA SASASNQVASSYTGPAASVAHASPSATEIASAPPQVARAGQIGGIMARNF AMQTGLNSQLGAGTGAQTLPLERLFEIQRHIEVLRSEVQNLVLHATEAQL SAMESEEEAQNSGQASSEISSHNRAAAGAASSESVVTPHAVVQDSGARHE QVEVGGRGGGSASSAGGAGGGRQGRSEEEDSEAQRIRRRRIEFLERLNRS * back to topmRNA from alignment at tig00000007_pilon:803660..805912+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil7384.t1 ID=Gchil7384.t1|Name=Gchil7384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2253bp|location=Sequence derived from alignment at tig00000007_pilon:803660..805912+ (Gracilaria chilensis NLEC103_M9 male) ATGGCGCTTGTGTCAATACTACTAATCTGGCGTATTACGCAACTAATTTT
CCTCGGCCCTCTACGTTTCAGGGAAGTGGAACGGTTACAGCTTCGTGCTC
GAGATGCTATCATCGAATATCTATTTGCTCTCTCTGTGTTCCGCGATGAT
TTTAACACTCGCTTTGTGGCGTTCATCATGACTGTTTTGCTTCTGAAGAG
TTTACATTGGCTGGCCAAGGACCGAACAGACTATCTAGAAGAACAGCTCC
GATGTCCACTTCGCACTCACATCCGCCTCGTTGGTCTTCTGGTGCTTCTT
GCGTTCCTTGACGTGTTTCTTGCGGCATTTTGTATCCAAAAGACTGTACA
AAGCAACGGGCGGTCCATGTTTGTTCTGTTTTCATTTGAATTTACTCTGC
TCGCCATCGAGCTCACTGGGAACGTTTTCCAGTACATTTTCTTTCTCATT
GACCAAGGAATGGATGGGCGTTGGGGATCGAAGGGCGTATTCTCCTTTTA
CGCCGAGCTGTTGTGCGACTTGTCAACGCTTACTATATATATTGTGTTCT
TCATCTATGTGCAGATTTACTATTCGTTCCCGTACCATATCATTCGCGAG
TTCTACGTGACGCTGAGCAAGTTCCAACGCAAGTGTGCGGATTTCCTTCG
CTATCGTCGCGTGGTGGCAAATATGCACCAAGTCGTGCAAGTAGTGACGG
AGGAAGAGCTTCAGCAAGGAGACCGCACTTGTATCATCTGTCGAGAGGAA
ATGGAGTCGGCTATCAAGCTGGGGTGCGGGCACGTGTTTCATCGTCGATG
CCTTGAAAACTGGCTCAAACGCCAACTCAGCTGCCCGACTTGCAGGGCTA
CCATTGATGTGAACCGCAACGCGTCGCGAAATCAAGAGCGTGGCGCAAAT
CACAACGCAAACGCAAATCGACCACCGCAGCCAAATGCCGCTGCGCAGCC
TGCCAACTCGAATCGACCCCAAGCGCAAACTCAAGCGGACCAGCCTGCCG
ATCGCGGACCACAGCCGCCTCATCAACAACCGTTAGCGCAACACGCTGGT
GTGCCCCGTGCGGCCCAAAACGATAACATCGCCGACGGCGGCGCTCGTTT
GCTTCACTTTGCAAACCAATGGTTTAACCAAGTTATGAATGAAGCCGGCG
TTCGTCCTCAGCCCAATGCTCAAAACCCACAGCCGCCAAACCCTAACAAT
GCACATGCTAatcatcaccatcatcatcatcaccatcaccatcaccaCGC
AAATCCCATTCAGGAACCGAATCGGCAAATGACCCCACAGCCAAACCAGC
AACAAGCGCAGCAGGCCCAACATCCGAACGCGTTCTTGAACTACCCGTTT
CTCCCCGGACCAAACGCAATTGCACACATGCAGCTTCGTGCACGTCGCCG
CGGCGCACTGGCCGGAATTCAACAATACCAACCCATATATCGCGTCCAAT
TTCCGCCGTTGAACAATGCTCCCAATACGGCAAATCAAGCTCCGTCTCAG
AATGCCAACCTAGCCACACAGAACGCCACACCCGCTTCTGGCGTATCAGA
ACAGGCAGGCGTGCAAAACGATGCAAGCGCTTCCAATCTGTCTAATGCAC
CTCAGCAACACGTCAGGGGCTCTTCATCGTCAACTTCGTCTGCCTCTGCC
TCTGCCTCTGCTTCAAACCAAGTGGCAAGTTCCTATACAGGCCCTGCTGC
CAGTGTTGCACACGCGAGCCCTTCTGCGACGGAAATCGCTTCTGCGCCCC
CGCAAGTAGCACGGGCAGGCCAGATTGGCGGAATAATGGCGAGGAACTTC
GCCATGCAGACGGGTTTGAATTCACAACTTGGCGCGGGCACCGGGGCGCA
GACTCTGCCCTTGGAGCGCTTGTTTGAAATTCAGAGACACATCGAGGTTT
TGCGAAGCGAGGTGCAGAATTTGGTCCTTCACGCCACCGAGGCGCAACTG
AGTGCCATGGAGAGTGAAGAAGAAGCACAGAACAGCGGTCAAGCGTCAAG
CGAAATTTCATCCCATAATCGTGCTGCTGCCGGCGCCGCCAGCTCGGAGA
GTGTGGTGACGCCGCACGCAGTTGTGCAGGACAGTGGGGCTCGACATGAA
CAGGTTGAAGTGGGTGGGCGAGGAGGCGGAAGCGCGTCCTCGGCGGGAGG
AGCTGGGGGCGGTCGTCAAGGGAGAAGTGAGGAAGAAGACTCGGAAGCAC
AAAGAATCCGTCGACGGAGAATTGAATTCTTGGAGCGATTAAATCGAAGT
TAG back to topCoding sequence (CDS) from alignment at tig00000007_pilon:803660..805912+ >Gchil7384.t1 ID=Gchil7384.t1|Name=Gchil7384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2253bp|location=Sequence derived from alignment at tig00000007_pilon:803660..805912+ (Gracilaria chilensis NLEC103_M9 male) ATGGCGCTTGTGTCAATACTACTAATCTGGCGTATTACGCAACTAATTTT CCTCGGCCCTCTACGTTTCAGGGAAGTGGAACGGTTACAGCTTCGTGCTC GAGATGCTATCATCGAATATCTATTTGCTCTCTCTGTGTTCCGCGATGAT TTTAACACTCGCTTTGTGGCGTTCATCATGACTGTTTTGCTTCTGAAGAG TTTACATTGGCTGGCCAAGGACCGAACAGACTATCTAGAAGAACAGCTCC GATGTCCACTTCGCACTCACATCCGCCTCGTTGGTCTTCTGGTGCTTCTT GCGTTCCTTGACGTGTTTCTTGCGGCATTTTGTATCCAAAAGACTGTACA AAGCAACGGGCGGTCCATGTTTGTTCTGTTTTCATTTGAATTTACTCTGC TCGCCATCGAGCTCACTGGGAACGTTTTCCAGTACATTTTCTTTCTCATT GACCAAGGAATGGATGGGCGTTGGGGATCGAAGGGCGTATTCTCCTTTTA CGCCGAGCTGTTGTGCGACTTGTCAACGCTTACTATATATATTGTGTTCT TCATCTATGTGCAGATTTACTATTCGTTCCCGTACCATATCATTCGCGAG TTCTACGTGACGCTGAGCAAGTTCCAACGCAAGTGTGCGGATTTCCTTCG CTATCGTCGCGTGGTGGCAAATATGCACCAAGTCGTGCAAGTAGTGACGG AGGAAGAGCTTCAGCAAGGAGACCGCACTTGTATCATCTGTCGAGAGGAA ATGGAGTCGGCTATCAAGCTGGGGTGCGGGCACGTGTTTCATCGTCGATG CCTTGAAAACTGGCTCAAACGCCAACTCAGCTGCCCGACTTGCAGGGCTA CCATTGATGTGAACCGCAACGCGTCGCGAAATCAAGAGCGTGGCGCAAAT CACAACGCAAACGCAAATCGACCACCGCAGCCAAATGCCGCTGCGCAGCC TGCCAACTCGAATCGACCCCAAGCGCAAACTCAAGCGGACCAGCCTGCCG ATCGCGGACCACAGCCGCCTCATCAACAACCGTTAGCGCAACACGCTGGT GTGCCCCGTGCGGCCCAAAACGATAACATCGCCGACGGCGGCGCTCGTTT GCTTCACTTTGCAAACCAATGGTTTAACCAAGTTATGAATGAAGCCGGCG TTCGTCCTCAGCCCAATGCTCAAAACCCACAGCCGCCAAACCCTAACAAT GCACATGCTAatcatcaccatcatcatcatcaccatcaccatcaccaCGC AAATCCCATTCAGGAACCGAATCGGCAAATGACCCCACAGCCAAACCAGC AACAAGCGCAGCAGGCCCAACATCCGAACGCGTTCTTGAACTACCCGTTT CTCCCCGGACCAAACGCAATTGCACACATGCAGCTTCGTGCACGTCGCCG CGGCGCACTGGCCGGAATTCAACAATACCAACCCATATATCGCGTCCAAT TTCCGCCGTTGAACAATGCTCCCAATACGGCAAATCAAGCTCCGTCTCAG AATGCCAACCTAGCCACACAGAACGCCACACCCGCTTCTGGCGTATCAGA ACAGGCAGGCGTGCAAAACGATGCAAGCGCTTCCAATCTGTCTAATGCAC CTCAGCAACACGTCAGGGGCTCTTCATCGTCAACTTCGTCTGCCTCTGCC TCTGCCTCTGCTTCAAACCAAGTGGCAAGTTCCTATACAGGCCCTGCTGC CAGTGTTGCACACGCGAGCCCTTCTGCGACGGAAATCGCTTCTGCGCCCC CGCAAGTAGCACGGGCAGGCCAGATTGGCGGAATAATGGCGAGGAACTTC GCCATGCAGACGGGTTTGAATTCACAACTTGGCGCGGGCACCGGGGCGCA GACTCTGCCCTTGGAGCGCTTGTTTGAAATTCAGAGACACATCGAGGTTT TGCGAAGCGAGGTGCAGAATTTGGTCCTTCACGCCACCGAGGCGCAACTG AGTGCCATGGAGAGTGAAGAAGAAGCACAGAACAGCGGTCAAGCGTCAAG CGAAATTTCATCCCATAATCGTGCTGCTGCCGGCGCCGCCAGCTCGGAGA GTGTGGTGACGCCGCACGCAGTTGTGCAGGACAGTGGGGCTCGACATGAA CAGGTTGAAGTGGGTGGGCGAGGAGGCGGAAGCGCGTCCTCGGCGGGAGG AGCTGGGGGCGGTCGTCAAGGGAGAAGTGAGGAAGAAGACTCGGAAGCAC AAAGAATCCGTCGACGGAGAATTGAATTCTTGGAGCGATTAAATCGAAGT TAG back to top
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