Gchil7376.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7376.t1
Unique NameGchil7376.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length72
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:776571..776859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7376Gchil7376Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 776571..776859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1Gchil7376.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 776571..776859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1.stop1Gchil7376.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 776571..776573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1.CDS1Gchil7376.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 776571..776591 -
Gchil7376.t1.CDS2Gchil7376.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 776665..776859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1.exon1Gchil7376.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 776571..776591 -
Gchil7376.t1.exon2Gchil7376.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 776665..776859 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1.intron1Gchil7376.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 776592..776664 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7376.t1.start1Gchil7376.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 776857..776859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7376.t1 ID=Gchil7376.t1|Name=Gchil7376.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=72bp
MRRFFEVQRQALLLILGGRIGSNLNQFVLRSRRVGILLLFWCSPDLADLL
MDFDVHRYLCRDLLQLNMSSK*
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spliced messenger RNA

>Gchil7376.t1 ID=Gchil7376.t1|Name=Gchil7376.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp|location=Sequence derived from alignment at tig00000007_pilon:776571..776859- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACGTTTTTTCGAGGTCCAGAGACAAGCATTGTTGCTAATCCTTGG
GGGTAGGATTGGTAGCAATCTTAACCAGTTTGTGCTTAGATCAAGACGAG
TAGGGATACTACTCTTGTTCTGGTGCTCTCCAGATCTTGCTGATCTGCTG
ATGGATTTTGACGTTCACCGATATCTGTGCCGCGATCTATTGCAATTGAA
CATGTCGAGCAAGTAA
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protein sequence of Gchil7376.t1

>Gchil7376.t1 ID=Gchil7376.t1|Name=Gchil7376.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=72bp
MRRFFEVQRQALLLILGGRIGSNLNQFVLRSRRVGILLLFWCSPDLADLL
MDFDVHRYLCRDLLQLNMSSK*
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mRNA from alignment at tig00000007_pilon:776571..776859-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7376.t1 ID=Gchil7376.t1|Name=Gchil7376.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=289bp|location=Sequence derived from alignment at tig00000007_pilon:776571..776859- (Gracilaria chilensis NLEC103_M9 male)
ATGCGACGTTTTTTCGAGGTCCAGAGACAAGCATTGTTGCTAATCCTTGG
GGGTAGGATTGGTAGCAATCTTAACCAGTTTGTGCTTAGATCAAGACGAG
TAGGGATACTACTCTTGTTCTGGTGCTCTCCAGATCTTGCTGATCTGCTG
ATGGATTTTGACGTTCACCGATATCTGTGCCGCGATCTATTGCAAGTATG
TCTGCGCAAGTTAGGATCTTCTTGTTAACTTTTTCGAAAGGCACCATCTG
ACTCGAGCTTCACTGCAGTTGAACATGTCGAGCAAGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:776571..776859-

>Gchil7376.t1 ID=Gchil7376.t1|Name=Gchil7376.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=216bp|location=Sequence derived from alignment at tig00000007_pilon:776571..776859- (Gracilaria chilensis NLEC103_M9 male)
ATGCGACGTTTTTTCGAGGTCCAGAGACAAGCATTGTTGCTAATCCTTGG
GGGTAGGATTGGTAGCAATCTTAACCAGTTTGTGCTTAGATCAAGACGAG
TAGGGATACTACTCTTGTTCTGGTGCTCTCCAGATCTTGCTGATCTGCTG
ATGGATTTTGACGTTCACCGATATCTGTGCCGCGATCTATTGCAATTGAA
CATGTCGAGCAAGTAA
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