Gchil7355.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7355.t1
Unique NameGchil7355.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length739
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:633966..636258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FGT3
PFAMsABC1
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Evalue1.09e-185
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
COG categoryE
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7355Gchil7355Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 633966..636258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1Gchil7355.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 633966..636258 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1.stop1Gchil7355.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 633966..633968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1.CDS1Gchil7355.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 633966..634005 -
Gchil7355.t1.CDS2Gchil7355.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 634082..636258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1.exon1Gchil7355.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 633966..634005 -
Gchil7355.t1.exon2Gchil7355.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 634082..636258 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1.intron1Gchil7355.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 634006..634081 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7355.t1.start1Gchil7355.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 636256..636258 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7355.t1 ID=Gchil7355.t1|Name=Gchil7355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=739bp
MHAFVGLSPSSLRWQAPATGAPSRFARRCARTSRLSRPRCVPRAVSTGDA
AFKPSDASAAAAAAADANTVPRPSRRERAVVDAFRPTADELQLPPSPLPL
PLPVPPVPPVPPAAPADDGLVATAGITTDPVTTATASAALHFAPGDDVVD
VHAAWLTRRKSNAIARTFEIWLFFIRMLFAELNIRKLQDPTQLAAARRRQ
AARLKRGLLTLGPTFIKLGQLLSTRVDVVPKEYIDQLSVLQDRVPPFSGQ
RAVDVIEAEFNAPLHQLFDSFEMNPIAAASLGQVHRAVYKGQPVAVKIQR
AGLRQLFDVDLKNLRLLAFILDKLDPKTDGASRNWLQIYDESAKLLYEEI
DYLNEASNADRFRQNFANVDWVKVPAVYRDRTTEKVLTMEYVPGIKINDY
DAIDSAGLDRKLLAERSAESYLTQLLRHGYFHTDPHCGNLAVDAVAGGRL
IYYDFGMMSTFEPHIKRGLVDVVFAIYEGNVRQICNGMQLMGVLKPSADR
ITVEKVGRYFLSLFRTNLDNENRKKSKEEKRSEMLKRLDSIGEDLIALGD
DGCFNFPPVFTFVFRSFTTLEGIGKGLYPKYDLTIIAGPYLKELIDLKDG
SATVTAINAFRKKLGWRNKDLNAVVTQPRKTAYIEETVRRMESGDLKLRV
RVLESERAFKRVSLMQSNMALALGATTFSNMALMLTASAERFALQAKILW
LLAALFAVKLVIGIIKYRALDARLRKRHVDQLWGARLL*
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spliced messenger RNA

>Gchil7355.t1 ID=Gchil7355.t1|Name=Gchil7355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2217bp|location=Sequence derived from alignment at tig00000007_pilon:633966..636258- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGCCTTTGTTGGCTTGTCGCCGTCTTCGTTGCGCTGGCAAGCCCC
TGCGACAGGTGCACCGTCGCGCTTTGCGCGCCGCTGCGCGCGTACGTCGC
GCCTTTCGCGTCCGCGCTGCGTGCCGCGAGCCGTTTCCACCGGAGACGCT
GCCTTCAAGCCGTCTGACGCTTCTGCTGCCGCCGCCGCTGCTGCAGACGC
CAACACCGTCCCACGCCCGTCGCGCAGGGAGCGTGCTGTTGTCGATGCCT
TCCGCCCCACCGCCGACGAGCTGCAACTGCCCCCGTCTCCATTGCCATTG
CCGCTGCCCGTGCCGCCCGTGCCGCCTGTGCCGCCCGCTGCCCCTGCCGA
CGATGGCCTCGTCGCCACGGCTGGAATCACCACCGACCCCGTCACCACCG
CCACCGCCTCTGCTGCGCTGCACTTTGCGCCCGGAGACGACGTAGTCGAC
GTCCACGCCGCCTGGCTCACCCGCCGCAAGTCCAACGCCATCGCCCGCAC
CTTCGAGATTTGGCTCTTCTTCATCCGCATGCTCTTCGCCGAGCTCAACA
TCCGAAAGCTGCAAGACCCCACTCAACTTGCCGCCGCCCGCCGCCGCCAG
GCCGCACGCCTCAAGCGCGGGCTGCTTACGCTCGGGCCCACCTTCATCAA
ACTGGGCCAGCTGCTTTCCACGCGCGTCGACGTCGTCCCCAAGGAGTACA
TCGACCAGCTCTCCGTCCTGCAGGACCGCGTCCCGCCCTTCTCGGGCCAG
CGTGCCGTCGACGTCATCGAGGCCGAGTTCAACGCCCCGCTGCATCAGCT
TTTCGACTCCTTTGAAATGAACCCCATCGCCGCCGCCAGTCTGGGTCAGG
TTCACCGCGCCGTGTACAAAGGACAGCCCGTCGCCGTCAAGATTCAGCGC
GCCGGTTTACGACAGCTCTTCGACGTCGACCTCAAGAACCTTAGGCTGCT
CGCCTTCATTCTCGACAAGCTCGACCCCAAGACCGACGGCGCCTCGCGCA
ATTGGCTCCAGATTTACGATGAGAGCGCAAAACTGCTCTACGAGGAGATT
GACTATCTCAACGAGGCCTCCAACGCCGATCGCTTTCGCCAAAACTTTGC
AAACGTCGATTGGGTCAAGGTTCCCGCCGTGTACCGGGACCGCACCACCG
AAAAGGTCCTCACCATGGAGTATGTGCCTGGCATCAAGATCAACGACTAC
GATGCCATTGACAGCGCGGGCCTGGACCGCAAGTTACTTGCCGAGAGAAG
CGCGGAGAGTTATTTGACTCAGCTGCTGCGACACGGCTACTTCCACACCG
ACCCGCACTGCGGCAATCTTGCCGTCGACGCCGTCGCCGGCGGCAGGCTT
ATCTACTATGACTTCGGCATGATGAGTACATTTGAGCCTCACATCAAGCG
AGGGCTCGTGGACGTTGTCTTTGCCATCTACGAGGGCAACGTTCGACAGA
TATGCAACGGCATGCAGCTCATGGGAGTGCTCAAGCCGTCCGCAGACCGC
ATCACCGTCGAAAAGGTTGGTCGCTACTTTCTTTCGCTGTTTCGCACCAA
TCTTGACAACGAAAACCGCAAGAAAAGCAAAGAGGAAAAGCGCTCCGAGA
TGCTCAAGCGTCTGGACTCCATTGGCGAAGACCTCATTGCGCTTGGCGAC
GACGGATGCTTCAACTTCCCCCCTGTATTTACCTTTGTCTTTAGATCGTT
CACCACTTTGGAAGGCATCGGCAAGGGGTTGTATCCCAAGTATGACCTCA
CTATTATTGCCGGCCCCTATCTCAAGGAGCTTATCGACCTCAAGGACGGC
TCTGCAACCGTCACGGCCATCAATGCGTTCCGCAAGAAGCTGGGATGGCG
AAACAAAGACTTGAATGCAGTTGTGACGCAGCCGCGAAAGACGGCGTACA
TTGAAGAGACAGTGAGACGAATGGAGTCGGGTGATTTGAAGCTTCGCGTG
CGCGTACTCGAGTCCGAACGCGCCTTCAAGCGAGTTTCTCTCATGCAGAG
CAACATGGCCCTGGCGCTGGGCGCCACAACGTTCTCCAACATGGCGCTGA
TGCTCACGGCTTCTGCGGAACGCTTTGCTCTCCAAGCTAAAATTTTGTGG
CTGCTTGCGGCTCTCTTCGCCGTCAAGTTGGTCATCGGTATTATCAAGTA
TCGAGCTTTGGACGCTAGGCTGAGAAAGAGACATGTGGATCAGTTGTGGG
GGGCACGCTTACTCTAG
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protein sequence of Gchil7355.t1

>Gchil7355.t1 ID=Gchil7355.t1|Name=Gchil7355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=739bp
MHAFVGLSPSSLRWQAPATGAPSRFARRCARTSRLSRPRCVPRAVSTGDA
AFKPSDASAAAAAAADANTVPRPSRRERAVVDAFRPTADELQLPPSPLPL
PLPVPPVPPVPPAAPADDGLVATAGITTDPVTTATASAALHFAPGDDVVD
VHAAWLTRRKSNAIARTFEIWLFFIRMLFAELNIRKLQDPTQLAAARRRQ
AARLKRGLLTLGPTFIKLGQLLSTRVDVVPKEYIDQLSVLQDRVPPFSGQ
RAVDVIEAEFNAPLHQLFDSFEMNPIAAASLGQVHRAVYKGQPVAVKIQR
AGLRQLFDVDLKNLRLLAFILDKLDPKTDGASRNWLQIYDESAKLLYEEI
DYLNEASNADRFRQNFANVDWVKVPAVYRDRTTEKVLTMEYVPGIKINDY
DAIDSAGLDRKLLAERSAESYLTQLLRHGYFHTDPHCGNLAVDAVAGGRL
IYYDFGMMSTFEPHIKRGLVDVVFAIYEGNVRQICNGMQLMGVLKPSADR
ITVEKVGRYFLSLFRTNLDNENRKKSKEEKRSEMLKRLDSIGEDLIALGD
DGCFNFPPVFTFVFRSFTTLEGIGKGLYPKYDLTIIAGPYLKELIDLKDG
SATVTAINAFRKKLGWRNKDLNAVVTQPRKTAYIEETVRRMESGDLKLRV
RVLESERAFKRVSLMQSNMALALGATTFSNMALMLTASAERFALQAKILW
LLAALFAVKLVIGIIKYRALDARLRKRHVDQLWGARLL*
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mRNA from alignment at tig00000007_pilon:633966..636258-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7355.t1 ID=Gchil7355.t1|Name=Gchil7355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2293bp|location=Sequence derived from alignment at tig00000007_pilon:633966..636258- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCTTTGTTGGCTTGTCGCCGTCTTCGTTGCGCTGGCAAGCCCC
TGCGACAGGTGCACCGTCGCGCTTTGCGCGCCGCTGCGCGCGTACGTCGC
GCCTTTCGCGTCCGCGCTGCGTGCCGCGAGCCGTTTCCACCGGAGACGCT
GCCTTCAAGCCGTCTGACGCTTCTGCTGCCGCCGCCGCTGCTGCAGACGC
CAACACCGTCCCACGCCCGTCGCGCAGGGAGCGTGCTGTTGTCGATGCCT
TCCGCCCCACCGCCGACGAGCTGCAACTGCCCCCGTCTCCATTGCCATTG
CCGCTGCCCGTGCCGCCCGTGCCGCCTGTGCCGCCCGCTGCCCCTGCCGA
CGATGGCCTCGTCGCCACGGCTGGAATCACCACCGACCCCGTCACCACCG
CCACCGCCTCTGCTGCGCTGCACTTTGCGCCCGGAGACGACGTAGTCGAC
GTCCACGCCGCCTGGCTCACCCGCCGCAAGTCCAACGCCATCGCCCGCAC
CTTCGAGATTTGGCTCTTCTTCATCCGCATGCTCTTCGCCGAGCTCAACA
TCCGAAAGCTGCAAGACCCCACTCAACTTGCCGCCGCCCGCCGCCGCCAG
GCCGCACGCCTCAAGCGCGGGCTGCTTACGCTCGGGCCCACCTTCATCAA
ACTGGGCCAGCTGCTTTCCACGCGCGTCGACGTCGTCCCCAAGGAGTACA
TCGACCAGCTCTCCGTCCTGCAGGACCGCGTCCCGCCCTTCTCGGGCCAG
CGTGCCGTCGACGTCATCGAGGCCGAGTTCAACGCCCCGCTGCATCAGCT
TTTCGACTCCTTTGAAATGAACCCCATCGCCGCCGCCAGTCTGGGTCAGG
TTCACCGCGCCGTGTACAAAGGACAGCCCGTCGCCGTCAAGATTCAGCGC
GCCGGTTTACGACAGCTCTTCGACGTCGACCTCAAGAACCTTAGGCTGCT
CGCCTTCATTCTCGACAAGCTCGACCCCAAGACCGACGGCGCCTCGCGCA
ATTGGCTCCAGATTTACGATGAGAGCGCAAAACTGCTCTACGAGGAGATT
GACTATCTCAACGAGGCCTCCAACGCCGATCGCTTTCGCCAAAACTTTGC
AAACGTCGATTGGGTCAAGGTTCCCGCCGTGTACCGGGACCGCACCACCG
AAAAGGTCCTCACCATGGAGTATGTGCCTGGCATCAAGATCAACGACTAC
GATGCCATTGACAGCGCGGGCCTGGACCGCAAGTTACTTGCCGAGAGAAG
CGCGGAGAGTTATTTGACTCAGCTGCTGCGACACGGCTACTTCCACACCG
ACCCGCACTGCGGCAATCTTGCCGTCGACGCCGTCGCCGGCGGCAGGCTT
ATCTACTATGACTTCGGCATGATGAGTACATTTGAGCCTCACATCAAGCG
AGGGCTCGTGGACGTTGTCTTTGCCATCTACGAGGGCAACGTTCGACAGA
TATGCAACGGCATGCAGCTCATGGGAGTGCTCAAGCCGTCCGCAGACCGC
ATCACCGTCGAAAAGGTTGGTCGCTACTTTCTTTCGCTGTTTCGCACCAA
TCTTGACAACGAAAACCGCAAGAAAAGCAAAGAGGAAAAGCGCTCCGAGA
TGCTCAAGCGTCTGGACTCCATTGGCGAAGACCTCATTGCGCTTGGCGAC
GACGGATGCTTCAACTTCCCCCCTGTATTTACCTTTGTCTTTAGATCGTT
CACCACTTTGGAAGGCATCGGCAAGGGGTTGTATCCCAAGTATGACCTCA
CTATTATTGCCGGCCCCTATCTCAAGGAGCTTATCGACCTCAAGGACGGC
TCTGCAACCGTCACGGCCATCAATGCGTTCCGCAAGAAGCTGGGATGGCG
AAACAAAGACTTGAATGCAGTTGTGACGCAGCCGCGAAAGACGGCGTACA
TTGAAGAGACAGTGAGACGAATGGAGTCGGGTGATTTGAAGCTTCGCGTG
CGCGTACTCGAGTCCGAACGCGCCTTCAAGCGAGTTTCTCTCATGCAGAG
CAACATGGCCCTGGCGCTGGGCGCCACAACGTTCTCCAACATGGCGCTGA
TGCTCACGGCTTCTGCGGAACGCTTTGCTCTCCAAGCTAAAATTTTGTGG
CTGCTTGCGGCTCTCTTCGCCGTCAAGTTGGTCATCGGTATTATCAAGTA
TCGAGCTTTGGACGCTAGGCTGAGAAAGTATGTGAGAGGGGGGGGATGAG
CGATTTGGGAGCTGTTCAAAAAATGTTTGTTCTTTTTTTTGTTTTTGCGT
TAGGAGACATGTGGATCAGTTGTGGGGGGCACGCTTACTCTAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:633966..636258-

>Gchil7355.t1 ID=Gchil7355.t1|Name=Gchil7355.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2217bp|location=Sequence derived from alignment at tig00000007_pilon:633966..636258- (Gracilaria chilensis NLEC103_M9 male)
ATGCACGCCTTTGTTGGCTTGTCGCCGTCTTCGTTGCGCTGGCAAGCCCC
TGCGACAGGTGCACCGTCGCGCTTTGCGCGCCGCTGCGCGCGTACGTCGC
GCCTTTCGCGTCCGCGCTGCGTGCCGCGAGCCGTTTCCACCGGAGACGCT
GCCTTCAAGCCGTCTGACGCTTCTGCTGCCGCCGCCGCTGCTGCAGACGC
CAACACCGTCCCACGCCCGTCGCGCAGGGAGCGTGCTGTTGTCGATGCCT
TCCGCCCCACCGCCGACGAGCTGCAACTGCCCCCGTCTCCATTGCCATTG
CCGCTGCCCGTGCCGCCCGTGCCGCCTGTGCCGCCCGCTGCCCCTGCCGA
CGATGGCCTCGTCGCCACGGCTGGAATCACCACCGACCCCGTCACCACCG
CCACCGCCTCTGCTGCGCTGCACTTTGCGCCCGGAGACGACGTAGTCGAC
GTCCACGCCGCCTGGCTCACCCGCCGCAAGTCCAACGCCATCGCCCGCAC
CTTCGAGATTTGGCTCTTCTTCATCCGCATGCTCTTCGCCGAGCTCAACA
TCCGAAAGCTGCAAGACCCCACTCAACTTGCCGCCGCCCGCCGCCGCCAG
GCCGCACGCCTCAAGCGCGGGCTGCTTACGCTCGGGCCCACCTTCATCAA
ACTGGGCCAGCTGCTTTCCACGCGCGTCGACGTCGTCCCCAAGGAGTACA
TCGACCAGCTCTCCGTCCTGCAGGACCGCGTCCCGCCCTTCTCGGGCCAG
CGTGCCGTCGACGTCATCGAGGCCGAGTTCAACGCCCCGCTGCATCAGCT
TTTCGACTCCTTTGAAATGAACCCCATCGCCGCCGCCAGTCTGGGTCAGG
TTCACCGCGCCGTGTACAAAGGACAGCCCGTCGCCGTCAAGATTCAGCGC
GCCGGTTTACGACAGCTCTTCGACGTCGACCTCAAGAACCTTAGGCTGCT
CGCCTTCATTCTCGACAAGCTCGACCCCAAGACCGACGGCGCCTCGCGCA
ATTGGCTCCAGATTTACGATGAGAGCGCAAAACTGCTCTACGAGGAGATT
GACTATCTCAACGAGGCCTCCAACGCCGATCGCTTTCGCCAAAACTTTGC
AAACGTCGATTGGGTCAAGGTTCCCGCCGTGTACCGGGACCGCACCACCG
AAAAGGTCCTCACCATGGAGTATGTGCCTGGCATCAAGATCAACGACTAC
GATGCCATTGACAGCGCGGGCCTGGACCGCAAGTTACTTGCCGAGAGAAG
CGCGGAGAGTTATTTGACTCAGCTGCTGCGACACGGCTACTTCCACACCG
ACCCGCACTGCGGCAATCTTGCCGTCGACGCCGTCGCCGGCGGCAGGCTT
ATCTACTATGACTTCGGCATGATGAGTACATTTGAGCCTCACATCAAGCG
AGGGCTCGTGGACGTTGTCTTTGCCATCTACGAGGGCAACGTTCGACAGA
TATGCAACGGCATGCAGCTCATGGGAGTGCTCAAGCCGTCCGCAGACCGC
ATCACCGTCGAAAAGGTTGGTCGCTACTTTCTTTCGCTGTTTCGCACCAA
TCTTGACAACGAAAACCGCAAGAAAAGCAAAGAGGAAAAGCGCTCCGAGA
TGCTCAAGCGTCTGGACTCCATTGGCGAAGACCTCATTGCGCTTGGCGAC
GACGGATGCTTCAACTTCCCCCCTGTATTTACCTTTGTCTTTAGATCGTT
CACCACTTTGGAAGGCATCGGCAAGGGGTTGTATCCCAAGTATGACCTCA
CTATTATTGCCGGCCCCTATCTCAAGGAGCTTATCGACCTCAAGGACGGC
TCTGCAACCGTCACGGCCATCAATGCGTTCCGCAAGAAGCTGGGATGGCG
AAACAAAGACTTGAATGCAGTTGTGACGCAGCCGCGAAAGACGGCGTACA
TTGAAGAGACAGTGAGACGAATGGAGTCGGGTGATTTGAAGCTTCGCGTG
CGCGTACTCGAGTCCGAACGCGCCTTCAAGCGAGTTTCTCTCATGCAGAG
CAACATGGCCCTGGCGCTGGGCGCCACAACGTTCTCCAACATGGCGCTGA
TGCTCACGGCTTCTGCGGAACGCTTTGCTCTCCAAGCTAAAATTTTGTGG
CTGCTTGCGGCTCTCTTCGCCGTCAAGTTGGTCATCGGTATTATCAAGTA
TCGAGCTTTGGACGCTAGGCTGAGAAAGAGACATGTGGATCAGTTGTGGG
GGGCACGCTTACTCTAG
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