Gchil7343.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7343.t1
Unique NameGchil7343.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:545624..546364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX37817
Preferred nameLHCQ
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08914,ko:K14172
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
Evalue4.46e-67
EggNOG OGs2CMFR@1|root,2QQ8A@2759|Eukaryota
DescriptionThe light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7343Gchil7343Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 545624..546364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1Gchil7343.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 545624..546364 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1.stop1Gchil7343.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 545624..545626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1.CDS1Gchil7343.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 545624..546021 -
Gchil7343.t1.CDS2Gchil7343.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 546121..546364 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1.exon1Gchil7343.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 545624..546021 -
Gchil7343.t1.exon2Gchil7343.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 546121..546364 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1.intron1Gchil7343.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 546022..546120 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7343.t1.start1Gchil7343.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 546362..546364 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7343.t1 ID=Gchil7343.t1|Name=Gchil7343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=214bp
MTAFIAPIVTGFSGAIRGQDVCRAPRVSRSALTMKMSPAMPFMEQPSSLD
DDSIVGNVGFDPLNLSTVFNIKFMQEAEIKHCRIAMLGVLGYIVPEIFQF
PWGKPLNPIEAHDFFVKTGGMSQILLFASFLEIFGAIALRETLQGDREPG
YFGFDPLGLGKDPAKFKRYQLSEIKNGRLAMCAFGGLYHATLLSKQGTLE
QLAHFKALPGHLY*
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spliced messenger RNA

>Gchil7343.t1 ID=Gchil7343.t1|Name=Gchil7343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000007_pilon:545624..546364- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGTTTATTGCCCCAATTGTCACTGGCTTCTCGGGCGCCATTAG
AGGACAAGATGTTTGTCGCGCCCCACGCGTCTCTCGCTCAGCGCTCACCA
TGAAGATGTCGCCGGCAATGCCGTTCATGGAGCAGCCGTCCTCCCTTGAC
GACGACTCCATCGTTGGAAATGTCGGCTTCGACCCGCTTAACCTCTCCAC
CGTCTTCAACATCAAATTCATGCAAGAAGCGGAAATCAAACACTGCCGTA
TTGCAATGCTCGGCGTTCTTGGATACATTGTCCCCGAGATTTTCCAGTTC
CCATGGGGCAAGCCGCTCAACCCAATCGAGGCCCATGACTTCTTCGTCAA
AACGGGCGGCATGTCTCAAATTCTCCTCTTTGCATCCTTCTTGGAAATCT
TCGGAGCAATTGCGTTGAGGGAGACTCTCCAAGGTGACCGTGAGCCAGGC
TACTTTGGCTTTGACCCACTGGGATTGGGCAAGGACCCCGCCAAGTTCAA
GAGGTACCAGTTGTCAGAGATCAAGAACGGCCGATTGGCCATGTGCGCGT
TTGGCGGCTTGTACCATGCCACCCTACTCAGTAAGCAGGGCACATTGGAA
CAGCTCGCTCACTTCAAGGCTCTTCCCGGACACTTGTATTAA
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protein sequence of Gchil7343.t1

>Gchil7343.t1 ID=Gchil7343.t1|Name=Gchil7343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=214bp
MTAFIAPIVTGFSGAIRGQDVCRAPRVSRSALTMKMSPAMPFMEQPSSLD
DDSIVGNVGFDPLNLSTVFNIKFMQEAEIKHCRIAMLGVLGYIVPEIFQF
PWGKPLNPIEAHDFFVKTGGMSQILLFASFLEIFGAIALRETLQGDREPG
YFGFDPLGLGKDPAKFKRYQLSEIKNGRLAMCAFGGLYHATLLSKQGTLE
QLAHFKALPGHLY*
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mRNA from alignment at tig00000007_pilon:545624..546364-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7343.t1 ID=Gchil7343.t1|Name=Gchil7343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000007_pilon:545624..546364- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGTTTATTGCCCCAATTGTCACTGGCTTCTCGGGCGCCATTAG
AGGACAAGATGTTTGTCGCGCCCCACGCGTCTCTCGCTCAGCGCTCACCA
TGAAGATGTCGCCGGCAATGCCGTTCATGGAGCAGCCGTCCTCCCTTGAC
GACGACTCCATCGTTGGAAATGTCGGCTTCGACCCGCTTAACCTCTCCAC
CGTCTTCAACATCAAATTCATGCAAGAAGCGGAAATCAAACACTGTACGT
TGGCCTCATGTCCCATAACTCTTGTCTCGCCGTGTTCCATACTAACCCTC
CCTTGTTCGCCCCTCGTCACTCCTCTTCTCCACCTTCCCACAGGCCGTAT
TGCAATGCTCGGCGTTCTTGGATACATTGTCCCCGAGATTTTCCAGTTCC
CATGGGGCAAGCCGCTCAACCCAATCGAGGCCCATGACTTCTTCGTCAAA
ACGGGCGGCATGTCTCAAATTCTCCTCTTTGCATCCTTCTTGGAAATCTT
CGGAGCAATTGCGTTGAGGGAGACTCTCCAAGGTGACCGTGAGCCAGGCT
ACTTTGGCTTTGACCCACTGGGATTGGGCAAGGACCCCGCCAAGTTCAAG
AGGTACCAGTTGTCAGAGATCAAGAACGGCCGATTGGCCATGTGCGCGTT
TGGCGGCTTGTACCATGCCACCCTACTCAGTAAGCAGGGCACATTGGAAC
AGCTCGCTCACTTCAAGGCTCTTCCCGGACACTTGTATTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:545624..546364-

>Gchil7343.t1 ID=Gchil7343.t1|Name=Gchil7343.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000007_pilon:545624..546364- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGTTTATTGCCCCAATTGTCACTGGCTTCTCGGGCGCCATTAG
AGGACAAGATGTTTGTCGCGCCCCACGCGTCTCTCGCTCAGCGCTCACCA
TGAAGATGTCGCCGGCAATGCCGTTCATGGAGCAGCCGTCCTCCCTTGAC
GACGACTCCATCGTTGGAAATGTCGGCTTCGACCCGCTTAACCTCTCCAC
CGTCTTCAACATCAAATTCATGCAAGAAGCGGAAATCAAACACTGCCGTA
TTGCAATGCTCGGCGTTCTTGGATACATTGTCCCCGAGATTTTCCAGTTC
CCATGGGGCAAGCCGCTCAACCCAATCGAGGCCCATGACTTCTTCGTCAA
AACGGGCGGCATGTCTCAAATTCTCCTCTTTGCATCCTTCTTGGAAATCT
TCGGAGCAATTGCGTTGAGGGAGACTCTCCAAGGTGACCGTGAGCCAGGC
TACTTTGGCTTTGACCCACTGGGATTGGGCAAGGACCCCGCCAAGTTCAA
GAGGTACCAGTTGTCAGAGATCAAGAACGGCCGATTGGCCATGTGCGCGT
TTGGCGGCTTGTACCATGCCACCCTACTCAGTAAGCAGGGCACATTGGAA
CAGCTCGCTCACTTCAAGGCTCTTCCCGGACACTTGTATTAA
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