Gchil7334.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7334.t1
Unique NameGchil7334.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:432133..433112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S141_34V6.1
PFAMsSUI1
Max annot lvl35493|Streptophyta
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0065003,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0110017,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue3.07e-29
EggNOG OGsCOG0023@1|root,KOG3239@2759|Eukaryota,37PW1@33090|Viridiplantae,3GEVS@35493|Streptophyta
DescriptionTranslation machinery-associated protein
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7334Gchil7334Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 432133..433112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1Gchil7334.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 432133..433112 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1.stop1Gchil7334.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 432133..432135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1.CDS1Gchil7334.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 432133..432195 -
Gchil7334.t1.CDS2Gchil7334.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 432283..432363 -
Gchil7334.t1.CDS3Gchil7334.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 432453..432807 -
Gchil7334.t1.CDS4Gchil7334.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 432925..433112 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1.exon1Gchil7334.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 432133..432195 -
Gchil7334.t1.exon2Gchil7334.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 432283..432363 -
Gchil7334.t1.exon3Gchil7334.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 432453..432807 -
Gchil7334.t1.exon4Gchil7334.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 432925..433112 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1.intron1Gchil7334.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 432196..432282 -
Gchil7334.t1.intron2Gchil7334.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 432364..432452 -
Gchil7334.t1.intron3Gchil7334.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 432808..432924 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7334.t1.start1Gchil7334.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 433110..433112 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7334.t1 ID=Gchil7334.t1|Name=Gchil7334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=229bp
MDVASPSEDPPTAVAGPSQPPHPEDAEAPLLPDDRYPLSVLYCSVCTLPA
ELHEYHSRSQFQKCTEWLRNNAPQYFPQLFPDECAARLEALKLAEQTGVS
PPLLPCEQPQSQAPKVAVPIEQKTSGGKKKKTPAHIMLALGQRKGKKQVT
IVYGLDLFGIKLKDAAKAAKRKFATGSSITMSPDNREIIEIQGSRQQDFA
ELVHKEWGVPQDAIFIVNAQKKKVKAFP*
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spliced messenger RNA

>Gchil7334.t1 ID=Gchil7334.t1|Name=Gchil7334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000007_pilon:432133..433112- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTCGCTTCACCATCGGAAGATCCCCCTACCGCCGTCGCGGGTCC
CTCACAACCGCCCCACCCCGAAGACGCTGAAGCCCCCTTGCTTCCCGATG
ACCGATACCCCCTTTCCGTGCTATATTGCAGTGTGTGCACGCTTCCTGCT
GAACTTCACGAGTATCATTCACGCTCTCAGTTTCAAAAATGTACTGAATG
GTTGCGTAACAATGCTCCCCAATATTTCCCGCAGCTGTTTCCAGATGAAT
GCGCGGCCAGATTGGAGGCGTTGAAACTCGCTGAACAAACAGGCGTGTCG
CCGCCTTTACTGCCTTGCGAACAACCTCAGTCCCAAGCCCCCAAGGTCGC
CGTGCCTATCGAACAAAAGACCAGCGGCGGAAAGAAGAAAAAGACCCCTG
CGCATATTATGCTCGCACTTGGTCAGAGAAAGGGAAAGAAACAAGTCACT
ATTGTTTATGGGTTAGATCTCTTTGGTATCAAGCTGAAGGATGCCGCGAA
AGCTGCCAAGCGCAAGTTTGCAACCGGCTCTTCTATTACTATGTCGCCTG
ATAATCGTGAGATCATTGAGATTCAGGGTTCCCGGCAACAGGACTTTGCG
GAACTGGTTCACAAAGAATGGGGTGTGCCGCAAGACGCCATCTTCATTGT
CAATGCGCAGAAGAAGAAAGTCAAGGCTTTTCCGTAA
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protein sequence of Gchil7334.t1

>Gchil7334.t1 ID=Gchil7334.t1|Name=Gchil7334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=229bp
MDVASPSEDPPTAVAGPSQPPHPEDAEAPLLPDDRYPLSVLYCSVCTLPA
ELHEYHSRSQFQKCTEWLRNNAPQYFPQLFPDECAARLEALKLAEQTGVS
PPLLPCEQPQSQAPKVAVPIEQKTSGGKKKKTPAHIMLALGQRKGKKQVT
IVYGLDLFGIKLKDAAKAAKRKFATGSSITMSPDNREIIEIQGSRQQDFA
ELVHKEWGVPQDAIFIVNAQKKKVKAFP*
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mRNA from alignment at tig00000007_pilon:432133..433112-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7334.t1 ID=Gchil7334.t1|Name=Gchil7334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=980bp|location=Sequence derived from alignment at tig00000007_pilon:432133..433112- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGCTTCACCATCGGAAGATCCCCCTACCGCCGTCGCGGGTCC
CTCACAACCGCCCCACCCCGAAGACGCTGAAGCCCCCTTGCTTCCCGATG
ACCGATACCCCCTTTCCGTGCTATATTGCAGTGTGTGCACGCTTCCTGCT
GAACTTCACGAGTATCATTCACGCTCTCAGTTTCAAAAGTAAGTTTTTAT
GCTTTGTGCCGCCCCATTTCTCGTTTTCGTGTCTCGGTTGTTCCTGTATT
CCCTTTGGCTTCAATAGTTTCTAATTTGTCAACATTTGTTTTGTCTGAGT
CGTAGATGTACTGAATGGTTGCGTAACAATGCTCCCCAATATTTCCCGCA
GCTGTTTCCAGATGAATGCGCGGCCAGATTGGAGGCGTTGAAACTCGCTG
AACAAACAGGCGTGTCGCCGCCTTTACTGCCTTGCGAACAACCTCAGTCC
CAAGCCCCCAAGGTCGCCGTGCCTATCGAACAAAAGACCAGCGGCGGAAA
GAAGAAAAAGACCCCTGCGCATATTATGCTCGCACTTGGTCAGAGAAAGG
GAAAGAAACAAGTCACTATTGTTTATGGGTTAGATCTCTTTGGTATCAAG
CTGAAGGATGCCGCGAAAGCTGCCAAGCGCAAGTTTGCAACCGGCTCTTC
TATTACTATGGTACGTCATTTCCGTCCCATTTCAATCACCCTCATGGTTT
ATGCCCCGATTCCCAGCTGCTTACGTTCCTTCTTTTATTCCGCGTGTAGT
CGCCTGATAATCGTGAGATCATTGAGATTCAGGGTTCCCGGCAACAGGAC
TTTGCGGAACTGGTTCACAAAGAATGGGGTGTACGTTGTTCCCTCTCCTT
GTCGTTGATGTTTGATACTAGTCCTCTCACACCATGCTCCAAACCCTTTT
ATCTTTCTCCTGTACAGGTGCCGCAAGACGCCATCTTCATTGTCAATGCG
CAGAAGAAGAAAGTCAAGGCTTTTCCGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:432133..433112-

>Gchil7334.t1 ID=Gchil7334.t1|Name=Gchil7334.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000007_pilon:432133..433112- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGTCGCTTCACCATCGGAAGATCCCCCTACCGCCGTCGCGGGTCC
CTCACAACCGCCCCACCCCGAAGACGCTGAAGCCCCCTTGCTTCCCGATG
ACCGATACCCCCTTTCCGTGCTATATTGCAGTGTGTGCACGCTTCCTGCT
GAACTTCACGAGTATCATTCACGCTCTCAGTTTCAAAAATGTACTGAATG
GTTGCGTAACAATGCTCCCCAATATTTCCCGCAGCTGTTTCCAGATGAAT
GCGCGGCCAGATTGGAGGCGTTGAAACTCGCTGAACAAACAGGCGTGTCG
CCGCCTTTACTGCCTTGCGAACAACCTCAGTCCCAAGCCCCCAAGGTCGC
CGTGCCTATCGAACAAAAGACCAGCGGCGGAAAGAAGAAAAAGACCCCTG
CGCATATTATGCTCGCACTTGGTCAGAGAAAGGGAAAGAAACAAGTCACT
ATTGTTTATGGGTTAGATCTCTTTGGTATCAAGCTGAAGGATGCCGCGAA
AGCTGCCAAGCGCAAGTTTGCAACCGGCTCTTCTATTACTATGTCGCCTG
ATAATCGTGAGATCATTGAGATTCAGGGTTCCCGGCAACAGGACTTTGCG
GAACTGGTTCACAAAGAATGGGGTGTGCCGCAAGACGCCATCTTCATTGT
CAATGCGCAGAAGAAGAAAGTCAAGGCTTTTCCGTAA
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