Gchil7324.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7324.t1
Unique NameGchil7324.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length79
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:210079..210411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7324Gchil7324Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 210079..210411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1Gchil7324.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 210079..210411 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1.start1Gchil7324.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 210079..210081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1.CDS1Gchil7324.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 210079..210182 +
Gchil7324.t1.CDS2Gchil7324.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 210279..210411 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1.exon1Gchil7324.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 210079..210182 +
Gchil7324.t1.exon2Gchil7324.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 210279..210411 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1.intron1Gchil7324.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 210183..210278 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7324.t1.stop1Gchil7324.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 210409..210411 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7324.t1 ID=Gchil7324.t1|Name=Gchil7324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=79bp
MRNFSHRILLVQLGESVPNHPRVSYRCPASRQTLLFPCTFRELTHFVLAN
DQQQLQKRVVSVNLLFFFHLTVNPNTMI*
back to top

spliced messenger RNA

>Gchil7324.t1 ID=Gchil7324.t1|Name=Gchil7324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=237bp|location=Sequence derived from alignment at tig00000007_pilon:210079..210411+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAATTTTTCTCACCGAATTCTTTTGGTGCAGCTTGGTGAGTCCGT
TCCGAATCACCCTAGAGTTTCTTACCGCTGTCCAGCCTCTCGGCAAACCT
TACTTTTCCCTTGCACTTTCCGCGAACTAACGCACTTTGTCCTGGCCAAC
GACCAACAGCAACTTCAAAAGCGAGTTGTCAGTGTGAACCTTCTATTCTT
TTTCCATCTAACCGTAAACCCTAACACAATGATCTGA
back to top

protein sequence of Gchil7324.t1

>Gchil7324.t1 ID=Gchil7324.t1|Name=Gchil7324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=79bp
MRNFSHRILLVQLGESVPNHPRVSYRCPASRQTLLFPCTFRELTHFVLAN
DQQQLQKRVVSVNLLFFFHLTVNPNTMI*
back to top

mRNA from alignment at tig00000007_pilon:210079..210411+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7324.t1 ID=Gchil7324.t1|Name=Gchil7324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00000007_pilon:210079..210411+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGAATTTTTCTCACCGAATTCTTTTGGTGCAGCTTGGTGAGTCCGT
TCCGAATCACCCTAGAGTTTCTTACCGCTGTCCAGCCTCTCGGCAAACCT
TACTGTATGTGTGTGCTCAGCGACTCTGAGTCCCCTTTTTTGTTGCTCTC
ACAAACTTCTTCGGAACCCGCTAACATCTCCGTCTCCATCGCTTTTTCAG
TTTCCCTTGCACTTTCCGCGAACTAACGCACTTTGTCCTGGCCAACGACC
AACAGCAACTTCAAAAGCGAGTTGTCAGTGTGAACCTTCTATTCTTTTTC
CATCTAACCGTAAACCCTAACACAATGATCTGA
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:210079..210411+

>Gchil7324.t1 ID=Gchil7324.t1|Name=Gchil7324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=237bp|location=Sequence derived from alignment at tig00000007_pilon:210079..210411+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGAATTTTTCTCACCGAATTCTTTTGGTGCAGCTTGGTGAGTCCGT
TCCGAATCACCCTAGAGTTTCTTACCGCTGTCCAGCCTCTCGGCAAACCT
TACTTTTCCCTTGCACTTTCCGCGAACTAACGCACTTTGTCCTGGCCAAC
GACCAACAGCAACTTCAAAAGCGAGTTGTCAGTGTGAACCTTCTATTCTT
TTTCCATCTAACCGTAAACCCTAACACAATGATCTGA
back to top