Gchil7310.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7310.t1
Unique NameGchil7310.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:64796..66265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.0026s0032.1.p
Preferred nameCOQ6
PFAMsDUF1232,FAD_binding_3
Max annot lvl35493|Streptophyta
KEGG rclassRC02670
KEGG koko:K06126
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Evalue6.42e-64
EggNOG OGsCOG0654@1|root,KOG3855@2759|Eukaryota,37K56@33090|Viridiplantae,3GFF5@35493|Streptophyta,3HNIM@3699|Brassicales
DescriptionFAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7310Gchil7310Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 64796..66265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7310.t1.stop1Gchil7310.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 64796..64798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7310.t1.CDS1Gchil7310.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 64796..66265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7310.t1.exon1Gchil7310.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 64796..66265 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7310.t1.start1Gchil7310.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 66263..66265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7310.t1Gchil7310.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 64796..66265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7310.t1 ID=Gchil7310.t1|Name=Gchil7310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
MQSADLLIVGGGLVGASLATAVSLHPFAKSLNVVLVDPAPPSIESWPSTS
LRTSTITPSSKTFLEDIGVWPRIPVDRVAVFDKMFVWDHPPPLPLAEPHT
NLSGTPAGTIVFDASEIQQDCLGYVLDNDTLRNVMFRRINDLLDGNSGLR
IISGSVKNIDYQGGESYQAVDSQDQTESNTVDDSAPWPVVELDSGELIRC
RLIAACDGSRSRVRAMCDADWFHYSYGQSAVVANVEMSDVITAAYQRFVS
TGPVAVLPVATEDTVAPVGNVIWTTTPTEARALFAADESDFINELNIVLA
GHEDSETVTASSFYPNEDGRRGTPWHWMVSAMQSAFPNVGDERNKLSIMP
PPEATGILGNRATFPLTLGHSPQYVHHKKRTVLVGDAAHSVHPLAGQGVN
LGFADAQCLSDCLATAASTGRDIGGEMGAPLMRYQSERLIGNLGMIGVLH
GLQRVFGVENSVFRAWRRAGISALNYSNPLKKVILKAMR*
back to top

spliced messenger RNA

>Gchil7310.t1 ID=Gchil7310.t1|Name=Gchil7310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000007_pilon:64796..66265- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCGCCGACTTGCTTATCGTGGGGGGAGGGCTGGTCGGGGCTTC
GTTGGCCACCGCCGTGAGTTTGCATCCGTTTGCCAAAAGTTTGAACGTGG
TTTTGGTTGATCCAGCCCCGCCGTCCATCGAGTCATGGCCTTCAACGTCG
TTGAGAACCTCCACCATCACCCCGTCCTCAAAGACGTTTCTGGAGGATAT
CGGCGTCTGGCCACGCATTCCTGTCGACCGAGTCGCCGTTTTCGATAAGA
TGTTTGTTTGGGATCACCCTCCACCACTTCCTCTGGCGGAACCGCACACA
AATCTTTCTGGCACCCCTGCCGGTACCATTGTGTTTGACGCGTCCGAAAT
TCAGCAGGACTGTCTAGGGTACGTTTTAGATAACGATACCTTGCGAAATG
TCATGTTTCGTCGCATAAATGACCTCCTTGATGGCAATTCAGGACTTCGA
ATCATCTCCGGAAGTGTCAAGAACATAGACTACCAAGGTGGGGAATCTTA
TCAAGCCGTTGATTCCCAGGATCAGACCGAGTCAAATACTGTCGATGACT
CTGCTCCGTGGCCTGTTGTCGAGTTGGATTCAGGTGAGCTTATTCGTTGT
CGGCTCATCGCTGCTTGCGATGGGTCTCGATCTCGTGTTCGAGCCATGTG
TGATGCTGATTGGTTTCATTATAGTTACGGGCAAAGCGCTGTCGTTGCTA
ATGTCGAAATGAGCGACGTTATCACCGCCGCATATCAACGCTTCGTCTCC
ACGGGACCTGTTGCTGTGTTGCCTGTTGCAACAGAAGACACTGTAGCACC
CGTTGGAAATGTCATTTGGACCACAACTCCAACTGAGGCGAGAGCGCTAT
TTGCTGCTGACGAATCTGACTTCATCAATGAGCTGAATATTGTGCTTGCG
GGACATGAGGATAGTGAAACCGTCACCGCAAGTTCCTTTTATCCAAATGA
AGACGGGCGGCGCGGGACGCCGTGGCATTGGATGGTGAGCGCAATGCAAT
CAGCGTTTCCGAACGTTGGCGATGAACGCAATAAATTGAGCATCATGCCG
CCGCCCGAAGCGACCGGCATCCTTGGCAACCGGGCAACTTTTCCTTTGAC
GCTTGGACACTCACCGCAATACGTTCATCACAAGAAGCGCACTGTTTTGG
TTGGCGATGCCGCGCACAGCGTTCACCCATTAGCTGGACAGGGCGTGAAC
TTGGGTTTCGCTGACGCACAGTGTTTGTCTGACTGCTTAGCAACCGCGGC
GAGTACGGGGCGAGACATTGGAGGAGAGATGGGTGCTCCTTTAATGCGAT
ATCAATCGGAAAGACTCATTGGCAACCTTGGTATGATTGGCGTGCTACAC
GGACTTCAACGGGTCTTTGGGGTTGAAAACTCAGTCTTTAGGGCTTGGAG
ACGCGCAGGTATTTCTGCGTTGAACTACTCAAATCCTCTGAAGAAAGTTA
TCCTCAAGGCAATGCGGTAG
back to top

protein sequence of Gchil7310.t1

>Gchil7310.t1 ID=Gchil7310.t1|Name=Gchil7310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
MQSADLLIVGGGLVGASLATAVSLHPFAKSLNVVLVDPAPPSIESWPSTS
LRTSTITPSSKTFLEDIGVWPRIPVDRVAVFDKMFVWDHPPPLPLAEPHT
NLSGTPAGTIVFDASEIQQDCLGYVLDNDTLRNVMFRRINDLLDGNSGLR
IISGSVKNIDYQGGESYQAVDSQDQTESNTVDDSAPWPVVELDSGELIRC
RLIAACDGSRSRVRAMCDADWFHYSYGQSAVVANVEMSDVITAAYQRFVS
TGPVAVLPVATEDTVAPVGNVIWTTTPTEARALFAADESDFINELNIVLA
GHEDSETVTASSFYPNEDGRRGTPWHWMVSAMQSAFPNVGDERNKLSIMP
PPEATGILGNRATFPLTLGHSPQYVHHKKRTVLVGDAAHSVHPLAGQGVN
LGFADAQCLSDCLATAASTGRDIGGEMGAPLMRYQSERLIGNLGMIGVLH
GLQRVFGVENSVFRAWRRAGISALNYSNPLKKVILKAMR*
back to top

mRNA from alignment at tig00000007_pilon:64796..66265-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7310.t1 ID=Gchil7310.t1|Name=Gchil7310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000007_pilon:64796..66265- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAGCGCCGACTTGCTTATCGTGGGGGGAGGGCTGGTCGGGGCTTC
GTTGGCCACCGCCGTGAGTTTGCATCCGTTTGCCAAAAGTTTGAACGTGG
TTTTGGTTGATCCAGCCCCGCCGTCCATCGAGTCATGGCCTTCAACGTCG
TTGAGAACCTCCACCATCACCCCGTCCTCAAAGACGTTTCTGGAGGATAT
CGGCGTCTGGCCACGCATTCCTGTCGACCGAGTCGCCGTTTTCGATAAGA
TGTTTGTTTGGGATCACCCTCCACCACTTCCTCTGGCGGAACCGCACACA
AATCTTTCTGGCACCCCTGCCGGTACCATTGTGTTTGACGCGTCCGAAAT
TCAGCAGGACTGTCTAGGGTACGTTTTAGATAACGATACCTTGCGAAATG
TCATGTTTCGTCGCATAAATGACCTCCTTGATGGCAATTCAGGACTTCGA
ATCATCTCCGGAAGTGTCAAGAACATAGACTACCAAGGTGGGGAATCTTA
TCAAGCCGTTGATTCCCAGGATCAGACCGAGTCAAATACTGTCGATGACT
CTGCTCCGTGGCCTGTTGTCGAGTTGGATTCAGGTGAGCTTATTCGTTGT
CGGCTCATCGCTGCTTGCGATGGGTCTCGATCTCGTGTTCGAGCCATGTG
TGATGCTGATTGGTTTCATTATAGTTACGGGCAAAGCGCTGTCGTTGCTA
ATGTCGAAATGAGCGACGTTATCACCGCCGCATATCAACGCTTCGTCTCC
ACGGGACCTGTTGCTGTGTTGCCTGTTGCAACAGAAGACACTGTAGCACC
CGTTGGAAATGTCATTTGGACCACAACTCCAACTGAGGCGAGAGCGCTAT
TTGCTGCTGACGAATCTGACTTCATCAATGAGCTGAATATTGTGCTTGCG
GGACATGAGGATAGTGAAACCGTCACCGCAAGTTCCTTTTATCCAAATGA
AGACGGGCGGCGCGGGACGCCGTGGCATTGGATGGTGAGCGCAATGCAAT
CAGCGTTTCCGAACGTTGGCGATGAACGCAATAAATTGAGCATCATGCCG
CCGCCCGAAGCGACCGGCATCCTTGGCAACCGGGCAACTTTTCCTTTGAC
GCTTGGACACTCACCGCAATACGTTCATCACAAGAAGCGCACTGTTTTGG
TTGGCGATGCCGCGCACAGCGTTCACCCATTAGCTGGACAGGGCGTGAAC
TTGGGTTTCGCTGACGCACAGTGTTTGTCTGACTGCTTAGCAACCGCGGC
GAGTACGGGGCGAGACATTGGAGGAGAGATGGGTGCTCCTTTAATGCGAT
ATCAATCGGAAAGACTCATTGGCAACCTTGGTATGATTGGCGTGCTACAC
GGACTTCAACGGGTCTTTGGGGTTGAAAACTCAGTCTTTAGGGCTTGGAG
ACGCGCAGGTATTTCTGCGTTGAACTACTCAAATCCTCTGAAGAAAGTTA
TCCTCAAGGCAATGCGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:64796..66265-

>Gchil7310.t1 ID=Gchil7310.t1|Name=Gchil7310.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000007_pilon:64796..66265- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAGCGCCGACTTGCTTATCGTGGGGGGAGGGCTGGTCGGGGCTTC
GTTGGCCACCGCCGTGAGTTTGCATCCGTTTGCCAAAAGTTTGAACGTGG
TTTTGGTTGATCCAGCCCCGCCGTCCATCGAGTCATGGCCTTCAACGTCG
TTGAGAACCTCCACCATCACCCCGTCCTCAAAGACGTTTCTGGAGGATAT
CGGCGTCTGGCCACGCATTCCTGTCGACCGAGTCGCCGTTTTCGATAAGA
TGTTTGTTTGGGATCACCCTCCACCACTTCCTCTGGCGGAACCGCACACA
AATCTTTCTGGCACCCCTGCCGGTACCATTGTGTTTGACGCGTCCGAAAT
TCAGCAGGACTGTCTAGGGTACGTTTTAGATAACGATACCTTGCGAAATG
TCATGTTTCGTCGCATAAATGACCTCCTTGATGGCAATTCAGGACTTCGA
ATCATCTCCGGAAGTGTCAAGAACATAGACTACCAAGGTGGGGAATCTTA
TCAAGCCGTTGATTCCCAGGATCAGACCGAGTCAAATACTGTCGATGACT
CTGCTCCGTGGCCTGTTGTCGAGTTGGATTCAGGTGAGCTTATTCGTTGT
CGGCTCATCGCTGCTTGCGATGGGTCTCGATCTCGTGTTCGAGCCATGTG
TGATGCTGATTGGTTTCATTATAGTTACGGGCAAAGCGCTGTCGTTGCTA
ATGTCGAAATGAGCGACGTTATCACCGCCGCATATCAACGCTTCGTCTCC
ACGGGACCTGTTGCTGTGTTGCCTGTTGCAACAGAAGACACTGTAGCACC
CGTTGGAAATGTCATTTGGACCACAACTCCAACTGAGGCGAGAGCGCTAT
TTGCTGCTGACGAATCTGACTTCATCAATGAGCTGAATATTGTGCTTGCG
GGACATGAGGATAGTGAAACCGTCACCGCAAGTTCCTTTTATCCAAATGA
AGACGGGCGGCGCGGGACGCCGTGGCATTGGATGGTGAGCGCAATGCAAT
CAGCGTTTCCGAACGTTGGCGATGAACGCAATAAATTGAGCATCATGCCG
CCGCCCGAAGCGACCGGCATCCTTGGCAACCGGGCAACTTTTCCTTTGAC
GCTTGGACACTCACCGCAATACGTTCATCACAAGAAGCGCACTGTTTTGG
TTGGCGATGCCGCGCACAGCGTTCACCCATTAGCTGGACAGGGCGTGAAC
TTGGGTTTCGCTGACGCACAGTGTTTGTCTGACTGCTTAGCAACCGCGGC
GAGTACGGGGCGAGACATTGGAGGAGAGATGGGTGCTCCTTTAATGCGAT
ATCAATCGGAAAGACTCATTGGCAACCTTGGTATGATTGGCGTGCTACAC
GGACTTCAACGGGTCTTTGGGGTTGAAAACTCAGTCTTTAGGGCTTGGAG
ACGCGCAGGTATTTCTGCGTTGAACTACTCAAATCCTCTGAAGAAAGTTA
TCCTCAAGGCAATGCGGTAG
back to top