Gchil7296.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7296.t1
Unique NameGchil7296.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:980828..981934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007136665.1
PFAMsSulfotransfer_1
Max annot lvl35493|Streptophyta
Evalue3.43e-05
EggNOG OGs28IM5@1|root,2QQY1@2759|Eukaryota,37JJ0@33090|Viridiplantae,3GGEG@35493|Streptophyta,4JSQF@91835|fabids
DescriptionBelongs to the sulfotransferase 1 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7296Gchil7296Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 980828..981934 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7296.t1.stop1Gchil7296.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 980828..980830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7296.t1.CDS1Gchil7296.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 980828..981934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7296.t1.exon1Gchil7296.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 980828..981934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7296.t1.start1Gchil7296.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 981932..981934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7296.t1Gchil7296.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 980828..981934 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7296.t1 ID=Gchil7296.t1|Name=Gchil7296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MRAHTTYSNRALPLAASHRPAQAFHSSRKKPFNLTRPLFVSLFLIIAVFF
LLVHSRTNQNSLRLLLDSQSSESARDIVYDDQVARAARHARPFPKCADTS
VRAKSFLIIFMGHSGSSAVLSELRSHSHVYMEIGELVDHQPVFNSTEALE
TIASFFERGLSGAKVPGFKIRPAHILNKPEEFRQLAEKYQTRILWNYRRN
LLKASVGEYSHRYLNDTSVVEGLRQNVTLEQRCKQGAGCRFRIDNFQFLH
DTIRNKVHSHHAVIDAVHIITGGNGCVREVPYEDYLYDRENVMKDIQRFL
GLPYEQTQPSRFKATGDNLCEVVENWDQLCHNFYGCFVWQKMLEDARNGC
FCKYSSGPTKYCSTEPVG*
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spliced messenger RNA

>Gchil7296.t1 ID=Gchil7296.t1|Name=Gchil7296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004441_pilon:980828..981934- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCACACACCACGTACTCAAACAGAGCTTTACCGCTTGCTGCTTC
GCATCGCCCTGCCCAGGCTTTTCACTCAAGCCGAAAGAAACCTTTCAATC
TGACTCGCCCTCTTTTTGTTTCTCTGTTTCTAATTATTGCTGTGTTCTTT
CTTCTTGTACATTCTCGCACCAATCAGAATTCGCTCAGGCTTCTTTTAGA
TTCACAATCATCCGAGTCTGCACGTGATATCGTGTATGATGACCAAGTGG
CTAGAGCTGCCCGTCACGCACGCCCTTTTCCTAAATGTGCTGATACCTCC
GTGCGTGCCAAGTCCTTTCTCATAATATTCATGGGGCATTCTGGCTCATC
TGCTGTTTTATCCGAACTACGTTCCCATTCACACGTTTATATGGAAATTG
GAGAGTTGGTCGATCATCAACCCGTCTTTAATTCAACTGAAGCCCTAGAA
ACTATAGCTTCCTTTTTCGAGCGCGGTTTGAGTGGGGCCAAAGTGCCGGG
GTTTAAGATCAGACCCGCACACATCCTCAACAAACCGGAGGAGTTCCGAC
AACTAGCTGAAAAGTATCAAACGCGAATACTCTGGAATTACAGAAGAAAT
CTTCTAAAAGCTAGCGTCGGAGAGTACTCACATCGCTACTTGAATGATAC
TTCTGTTGTAGAAGGCCTACGACAGAATGTTACTCTGGAGCAACGATGCA
AACAAGGAGCTGGATGTCGTTTCCGAATCGATAACTTTCAATTTCTTCAC
GACACCATTCGCAACAAAGTCCATAGTCATCACGCGGTTATTGATGCTGT
GCATATCATAACTGGGGGCAATGGATGTGTTCGTGAGGTGCCGTATGAAG
ACTATTTGTACGATCGAGAGAATGTTATGAAAGATATTCAAAGATTTCTA
GGATTACCATACGAGCAAACCCAACCATCGCGGTTTAAGGCCACGGGGGA
CAATTTGTGTGAGGTGGTTGAGAATTGGGACCAACTATGCCATAACTTTT
ATGGATGCTTTGTATGGCAAAAAATGCTTGAAGATGCTCGAAATGGTTGC
TTTTGCAAATATTCCAGTGGTCCTACAAAGTATTGCAGCACTGAGCCAGT
GGGATAA
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protein sequence of Gchil7296.t1

>Gchil7296.t1 ID=Gchil7296.t1|Name=Gchil7296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MRAHTTYSNRALPLAASHRPAQAFHSSRKKPFNLTRPLFVSLFLIIAVFF
LLVHSRTNQNSLRLLLDSQSSESARDIVYDDQVARAARHARPFPKCADTS
VRAKSFLIIFMGHSGSSAVLSELRSHSHVYMEIGELVDHQPVFNSTEALE
TIASFFERGLSGAKVPGFKIRPAHILNKPEEFRQLAEKYQTRILWNYRRN
LLKASVGEYSHRYLNDTSVVEGLRQNVTLEQRCKQGAGCRFRIDNFQFLH
DTIRNKVHSHHAVIDAVHIITGGNGCVREVPYEDYLYDRENVMKDIQRFL
GLPYEQTQPSRFKATGDNLCEVVENWDQLCHNFYGCFVWQKMLEDARNGC
FCKYSSGPTKYCSTEPVG*
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mRNA from alignment at tig00004441_pilon:980828..981934-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7296.t1 ID=Gchil7296.t1|Name=Gchil7296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00004441_pilon:980828..981934- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGCACACACCACGTACTCAAACAGAGCTTTACCGCTTGCTGCTTC
GCATCGCCCTGCCCAGGCTTTTCACTCAAGCCGAAAGAAACCTTTCAATC
TGACTCGCCCTCTTTTTGTTTCTCTGTTTCTAATTATTGCTGTGTTCTTT
CTTCTTGTACATTCTCGCACCAATCAGAATTCGCTCAGGCTTCTTTTAGA
TTCACAATCATCCGAGTCTGCACGTGATATCGTGTATGATGACCAAGTGG
CTAGAGCTGCCCGTCACGCACGCCCTTTTCCTAAATGTGCTGATACCTCC
GTGCGTGCCAAGTCCTTTCTCATAATATTCATGGGGCATTCTGGCTCATC
TGCTGTTTTATCCGAACTACGTTCCCATTCACACGTTTATATGGAAATTG
GAGAGTTGGTCGATCATCAACCCGTCTTTAATTCAACTGAAGCCCTAGAA
ACTATAGCTTCCTTTTTCGAGCGCGGTTTGAGTGGGGCCAAAGTGCCGGG
GTTTAAGATCAGACCCGCACACATCCTCAACAAACCGGAGGAGTTCCGAC
AACTAGCTGAAAAGTATCAAACGCGAATACTCTGGAATTACAGAAGAAAT
CTTCTAAAAGCTAGCGTCGGAGAGTACTCACATCGCTACTTGAATGATAC
TTCTGTTGTAGAAGGCCTACGACAGAATGTTACTCTGGAGCAACGATGCA
AACAAGGAGCTGGATGTCGTTTCCGAATCGATAACTTTCAATTTCTTCAC
GACACCATTCGCAACAAAGTCCATAGTCATCACGCGGTTATTGATGCTGT
GCATATCATAACTGGGGGCAATGGATGTGTTCGTGAGGTGCCGTATGAAG
ACTATTTGTACGATCGAGAGAATGTTATGAAAGATATTCAAAGATTTCTA
GGATTACCATACGAGCAAACCCAACCATCGCGGTTTAAGGCCACGGGGGA
CAATTTGTGTGAGGTGGTTGAGAATTGGGACCAACTATGCCATAACTTTT
ATGGATGCTTTGTATGGCAAAAAATGCTTGAAGATGCTCGAAATGGTTGC
TTTTGCAAATATTCCAGTGGTCCTACAAAGTATTGCAGCACTGAGCCAGT
GGGATAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:980828..981934-

>Gchil7296.t1 ID=Gchil7296.t1|Name=Gchil7296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00004441_pilon:980828..981934- (Gracilaria chilensis NLEC103_M9 male)
ATGAGGGCACACACCACGTACTCAAACAGAGCTTTACCGCTTGCTGCTTC
GCATCGCCCTGCCCAGGCTTTTCACTCAAGCCGAAAGAAACCTTTCAATC
TGACTCGCCCTCTTTTTGTTTCTCTGTTTCTAATTATTGCTGTGTTCTTT
CTTCTTGTACATTCTCGCACCAATCAGAATTCGCTCAGGCTTCTTTTAGA
TTCACAATCATCCGAGTCTGCACGTGATATCGTGTATGATGACCAAGTGG
CTAGAGCTGCCCGTCACGCACGCCCTTTTCCTAAATGTGCTGATACCTCC
GTGCGTGCCAAGTCCTTTCTCATAATATTCATGGGGCATTCTGGCTCATC
TGCTGTTTTATCCGAACTACGTTCCCATTCACACGTTTATATGGAAATTG
GAGAGTTGGTCGATCATCAACCCGTCTTTAATTCAACTGAAGCCCTAGAA
ACTATAGCTTCCTTTTTCGAGCGCGGTTTGAGTGGGGCCAAAGTGCCGGG
GTTTAAGATCAGACCCGCACACATCCTCAACAAACCGGAGGAGTTCCGAC
AACTAGCTGAAAAGTATCAAACGCGAATACTCTGGAATTACAGAAGAAAT
CTTCTAAAAGCTAGCGTCGGAGAGTACTCACATCGCTACTTGAATGATAC
TTCTGTTGTAGAAGGCCTACGACAGAATGTTACTCTGGAGCAACGATGCA
AACAAGGAGCTGGATGTCGTTTCCGAATCGATAACTTTCAATTTCTTCAC
GACACCATTCGCAACAAAGTCCATAGTCATCACGCGGTTATTGATGCTGT
GCATATCATAACTGGGGGCAATGGATGTGTTCGTGAGGTGCCGTATGAAG
ACTATTTGTACGATCGAGAGAATGTTATGAAAGATATTCAAAGATTTCTA
GGATTACCATACGAGCAAACCCAACCATCGCGGTTTAAGGCCACGGGGGA
CAATTTGTGTGAGGTGGTTGAGAATTGGGACCAACTATGCCATAACTTTT
ATGGATGCTTTGTATGGCAAAAAATGCTTGAAGATGCTCGAAATGGTTGC
TTTTGCAAATATTCCAGTGGTCCTACAAAGTATTGCAGCACTGAGCCAGT
GGGATAA
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