Gchil7292.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7292.t1
Unique NameGchil7292.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:973220..974967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707958.1
Preferred nameASNSD1
PFAMsAsn_synthase,GATase_7
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824,GO:0004066,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006528,GO:0006529,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009987,GO:0016053,GO:0016874,GO:0016879,GO:0016884,GO:0019752,GO:0032787,GO:0034641,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046983,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.49e-82
EggNOG OGsCOG0367@1|root,KOG0573@2759|Eukaryota
Descriptionasparagine synthase (glutamine-hydrolyzing) activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7292Gchil7292Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 973220..974967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1Gchil7292.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 973220..974967 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1.start1Gchil7292.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 973220..973222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1.CDS1Gchil7292.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 973220..974212 +
Gchil7292.t1.CDS2Gchil7292.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 974296..974967 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1.exon1Gchil7292.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 973220..974212 +
Gchil7292.t1.exon2Gchil7292.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 974296..974967 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1.intron1Gchil7292.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 974213..974295 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7292.t1.stop1Gchil7292.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 974965..974967 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7292.t1 ID=Gchil7292.t1|Name=Gchil7292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp
MCGIYAELVSGEVPSLPRWQFWTGTAQRSKSSGSSIPPFRSSVRQHLERR
GPDYQNTEVISIDAKCTLQLTQTTLSLRGSQKAADSFKGKNRLLYNGELY
GGIFIDEDDSDTQILLNYLNDKTSTHALEPEILDVLKGPWTIIYWHSHSK
RLYFARDCIGRRSLLMQVLPGKKIVLTSVAPEHDTYGFVEVPPAGVAYID
VSGVPKFGLYGRETHSVVPRRALSLIGNRNGNSDRIVSGSDIDMYVSFLP
KKWLRSKAPRTNLESLTPIESAQRFIALFKQSIKRRMVINVPSSNSRPRF
AVLFSGGIDSMFLSVILESCLPENEPLQLINLMLEEKSSRDVVRRWLCVD
VLAKQADETLASRVRHLLHPCDQLMDASIGTAIWLASQGIGYKLVHGFES
PREITQSPARVLFSGLGADELMGGYKGRHRTIFQSEGTDGILREMDADLS
RLWFRNLGRDDRLIGDHGREVRHPFLDEDLVDFITKLPLTEHVCDLSAPD
GVGDKHLLRRAARIIGLSDEATSRSKRAIQFGSRSRHVLERKNVSPPIVN
RTHP*
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spliced messenger RNA

>Gchil7292.t1 ID=Gchil7292.t1|Name=Gchil7292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00004441_pilon:973220..974967+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGAATCTATGCGGAGCTGGTTAGCGGTGAGGTTCCTTCTCTACC
GCGCTGGCAGTTTTGGACGGGCACGGCCCAAAGATCTAAATCGTCAGGAA
GCTCGATTCCACCTTTTCGAAGCTCTGTCCGGCAGCATTTGGAACGACGA
GGACCAGATTATCAAAACACAGAGGTTATAAGTATAGATGCAAAATGTAC
TTTGCAATTGACTCAAACGACTCTCTCCCTTCGTGGATCTCAGAAGGCAG
CCGATTCGTTCAAAGGGAAGAACAGACTTTTGTACAACGGGGAATTGTAT
GGTGGAATATTTATCGATGAAGATGATTCTGATACTCAAATCCTTCTCAA
TTACTTGAACGACAAAACATCTACGCATGCCTTGGAGCCAGAGATCTTGG
ATGTGCTTAAAGGCCCATGGACAATTATTTATTGGCATTCCCATTCCAAG
CGGTTGTATTTTGCAAGAGATTGTATCGGACGGCGTTCGCTTCTTATGCA
AGTTTTACCAGGAAAGAAGATTGTCTTAACTTCAGTAGCCCCAGAGCATG
ATACATACGGATTTGTGGAAGTTCCCCCGGCCGGAGTAGCGTACATTGAT
GTTTCGGGTGTTCCCAAATTCGGATTGTACGGGAGAGAAACCCATTCGGT
TGTGCCAAGACGTGCTTTGTCTTTGATCGGGAATAGAAATGGAAATAGTG
ATCGTATTGTTAGTGGCAGCGATATTGACATGTACGTTTCCTTTCTTCCG
AAAAAATGGTTGAGAAGCAAAGCACCCCGGACAAACTTGGAATCGCTGAC
ACCCATAGAGTCCGCGCAGAGATTCATTGCCTTGTTCAAGCAAAGTATCA
AGAGACGTATGGTAATCAATGTTCCCTCCAGTAACAGCCGGCCAAGATTC
GCAGTGCTCTTCTCGGGTGGAATTGATTCTATGTTTCTTTCTGTCATCCT
TGAGTCATGCCTCCCCGAAAACGAACCACTGCAGCTTATTAACCTTATGC
TCGAAGAGAAGAGCAGTCGAGATGTTGTGCGTCGATGGTTGTGCGTCGAT
GTACTTGCTAAACAGGCGGATGAAACTCTCGCTAGTCGTGTGCGACACCT
TTTACATCCCTGTGATCAGCTTATGGATGCCTCCATCGGTACCGCTATCT
GGCTTGCTTCCCAAGGAATAGGGTACAAACTTGTTCATGGCTTCGAAAGC
CCGCGTGAGATAACGCAATCTCCAGCAAGAGTGTTATTCAGCGGCCTTGG
CGCTGACGAACTGATGGGTGGTTATAAAGGTCGGCATCGTACAATTTTCC
AAAGCGAAGGGACTGACGGTATTCTTCGTGAAATGGATGCCGATTTAAGT
AGGTTATGGTTTCGAAATCTTGGACGAGACGATAGACTTATAGGAGACCA
TGGAAGAGAAGTACGCCATCCATTCCTTGATGAGGACTTGGTGGACTTTA
TCACAAAATTGCCGTTGACAGAACATGTATGTGATCTCTCAGCACCAGAT
GGTGTCGGTGATAAGCACTTACTTCGAAGAGCTGCTAGAATAATTGGACT
CTCGGATGAAGCGACCTCGCGTAGTAAGCGAGCCATACAATTCGGATCGA
GAAGTCGACATGTTCTCGAACGGAAAAATGTTTCGCCACCAATCGTCAAC
CGAACACATCCCTGA
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protein sequence of Gchil7292.t1

>Gchil7292.t1 ID=Gchil7292.t1|Name=Gchil7292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=555bp
MCGIYAELVSGEVPSLPRWQFWTGTAQRSKSSGSSIPPFRSSVRQHLERR
GPDYQNTEVISIDAKCTLQLTQTTLSLRGSQKAADSFKGKNRLLYNGELY
GGIFIDEDDSDTQILLNYLNDKTSTHALEPEILDVLKGPWTIIYWHSHSK
RLYFARDCIGRRSLLMQVLPGKKIVLTSVAPEHDTYGFVEVPPAGVAYID
VSGVPKFGLYGRETHSVVPRRALSLIGNRNGNSDRIVSGSDIDMYVSFLP
KKWLRSKAPRTNLESLTPIESAQRFIALFKQSIKRRMVINVPSSNSRPRF
AVLFSGGIDSMFLSVILESCLPENEPLQLINLMLEEKSSRDVVRRWLCVD
VLAKQADETLASRVRHLLHPCDQLMDASIGTAIWLASQGIGYKLVHGFES
PREITQSPARVLFSGLGADELMGGYKGRHRTIFQSEGTDGILREMDADLS
RLWFRNLGRDDRLIGDHGREVRHPFLDEDLVDFITKLPLTEHVCDLSAPD
GVGDKHLLRRAARIIGLSDEATSRSKRAIQFGSRSRHVLERKNVSPPIVN
RTHP*
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mRNA from alignment at tig00004441_pilon:973220..974967+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7292.t1 ID=Gchil7292.t1|Name=Gchil7292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1748bp|location=Sequence derived from alignment at tig00004441_pilon:973220..974967+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGAATCTATGCGGAGCTGGTTAGCGGTGAGGTTCCTTCTCTACC
GCGCTGGCAGTTTTGGACGGGCACGGCCCAAAGATCTAAATCGTCAGGAA
GCTCGATTCCACCTTTTCGAAGCTCTGTCCGGCAGCATTTGGAACGACGA
GGACCAGATTATCAAAACACAGAGGTTATAAGTATAGATGCAAAATGTAC
TTTGCAATTGACTCAAACGACTCTCTCCCTTCGTGGATCTCAGAAGGCAG
CCGATTCGTTCAAAGGGAAGAACAGACTTTTGTACAACGGGGAATTGTAT
GGTGGAATATTTATCGATGAAGATGATTCTGATACTCAAATCCTTCTCAA
TTACTTGAACGACAAAACATCTACGCATGCCTTGGAGCCAGAGATCTTGG
ATGTGCTTAAAGGCCCATGGACAATTATTTATTGGCATTCCCATTCCAAG
CGGTTGTATTTTGCAAGAGATTGTATCGGACGGCGTTCGCTTCTTATGCA
AGTTTTACCAGGAAAGAAGATTGTCTTAACTTCAGTAGCCCCAGAGCATG
ATACATACGGATTTGTGGAAGTTCCCCCGGCCGGAGTAGCGTACATTGAT
GTTTCGGGTGTTCCCAAATTCGGATTGTACGGGAGAGAAACCCATTCGGT
TGTGCCAAGACGTGCTTTGTCTTTGATCGGGAATAGAAATGGAAATAGTG
ATCGTATTGTTAGTGGCAGCGATATTGACATGTACGTTTCCTTTCTTCCG
AAAAAATGGTTGAGAAGCAAAGCACCCCGGACAAACTTGGAATCGCTGAC
ACCCATAGAGTCCGCGCAGAGATTCATTGCCTTGTTCAAGCAAAGTATCA
AGAGACGTATGGTAATCAATGTTCCCTCCAGTAACAGCCGGCCAAGATTC
GCAGTGCTCTTCTCGGGTGGAATTGATTCTATGTTTCTTTCTGTCATCCT
TGAGTCATGCCTCCCCGAAAACGAACCACTGCAGCTTATTAACGTTGCGT
TCGGTTGTGACAAAAGGTCCATTTCTCAGTGCCCGGATCGAATAACAGCC
TTGCATGGATTTCACGAGCTACATAGCTTATGCTCGAAGAGAAGAGCAGT
CGAGATGTTGTGCGTCGATGGTTGTGCGTCGATGTACTTGCTAAACAGGC
GGATGAAACTCTCGCTAGTCGTGTGCGACACCTTTTACATCCCTGTGATC
AGCTTATGGATGCCTCCATCGGTACCGCTATCTGGCTTGCTTCCCAAGGA
ATAGGGTACAAACTTGTTCATGGCTTCGAAAGCCCGCGTGAGATAACGCA
ATCTCCAGCAAGAGTGTTATTCAGCGGCCTTGGCGCTGACGAACTGATGG
GTGGTTATAAAGGTCGGCATCGTACAATTTTCCAAAGCGAAGGGACTGAC
GGTATTCTTCGTGAAATGGATGCCGATTTAAGTAGGTTATGGTTTCGAAA
TCTTGGACGAGACGATAGACTTATAGGAGACCATGGAAGAGAAGTACGCC
ATCCATTCCTTGATGAGGACTTGGTGGACTTTATCACAAAATTGCCGTTG
ACAGAACATGTATGTGATCTCTCAGCACCAGATGGTGTCGGTGATAAGCA
CTTACTTCGAAGAGCTGCTAGAATAATTGGACTCTCGGATGAAGCGACCT
CGCGTAGTAAGCGAGCCATACAATTCGGATCGAGAAGTCGACATGTTCTC
GAACGGAAAAATGTTTCGCCACCAATCGTCAACCGAACACATCCCTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:973220..974967+

>Gchil7292.t1 ID=Gchil7292.t1|Name=Gchil7292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00004441_pilon:973220..974967+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGGAATCTATGCGGAGCTGGTTAGCGGTGAGGTTCCTTCTCTACC
GCGCTGGCAGTTTTGGACGGGCACGGCCCAAAGATCTAAATCGTCAGGAA
GCTCGATTCCACCTTTTCGAAGCTCTGTCCGGCAGCATTTGGAACGACGA
GGACCAGATTATCAAAACACAGAGGTTATAAGTATAGATGCAAAATGTAC
TTTGCAATTGACTCAAACGACTCTCTCCCTTCGTGGATCTCAGAAGGCAG
CCGATTCGTTCAAAGGGAAGAACAGACTTTTGTACAACGGGGAATTGTAT
GGTGGAATATTTATCGATGAAGATGATTCTGATACTCAAATCCTTCTCAA
TTACTTGAACGACAAAACATCTACGCATGCCTTGGAGCCAGAGATCTTGG
ATGTGCTTAAAGGCCCATGGACAATTATTTATTGGCATTCCCATTCCAAG
CGGTTGTATTTTGCAAGAGATTGTATCGGACGGCGTTCGCTTCTTATGCA
AGTTTTACCAGGAAAGAAGATTGTCTTAACTTCAGTAGCCCCAGAGCATG
ATACATACGGATTTGTGGAAGTTCCCCCGGCCGGAGTAGCGTACATTGAT
GTTTCGGGTGTTCCCAAATTCGGATTGTACGGGAGAGAAACCCATTCGGT
TGTGCCAAGACGTGCTTTGTCTTTGATCGGGAATAGAAATGGAAATAGTG
ATCGTATTGTTAGTGGCAGCGATATTGACATGTACGTTTCCTTTCTTCCG
AAAAAATGGTTGAGAAGCAAAGCACCCCGGACAAACTTGGAATCGCTGAC
ACCCATAGAGTCCGCGCAGAGATTCATTGCCTTGTTCAAGCAAAGTATCA
AGAGACGTATGGTAATCAATGTTCCCTCCAGTAACAGCCGGCCAAGATTC
GCAGTGCTCTTCTCGGGTGGAATTGATTCTATGTTTCTTTCTGTCATCCT
TGAGTCATGCCTCCCCGAAAACGAACCACTGCAGCTTATTAACCTTATGC
TCGAAGAGAAGAGCAGTCGAGATGTTGTGCGTCGATGGTTGTGCGTCGAT
GTACTTGCTAAACAGGCGGATGAAACTCTCGCTAGTCGTGTGCGACACCT
TTTACATCCCTGTGATCAGCTTATGGATGCCTCCATCGGTACCGCTATCT
GGCTTGCTTCCCAAGGAATAGGGTACAAACTTGTTCATGGCTTCGAAAGC
CCGCGTGAGATAACGCAATCTCCAGCAAGAGTGTTATTCAGCGGCCTTGG
CGCTGACGAACTGATGGGTGGTTATAAAGGTCGGCATCGTACAATTTTCC
AAAGCGAAGGGACTGACGGTATTCTTCGTGAAATGGATGCCGATTTAAGT
AGGTTATGGTTTCGAAATCTTGGACGAGACGATAGACTTATAGGAGACCA
TGGAAGAGAAGTACGCCATCCATTCCTTGATGAGGACTTGGTGGACTTTA
TCACAAAATTGCCGTTGACAGAACATGTATGTGATCTCTCAGCACCAGAT
GGTGTCGGTGATAAGCACTTACTTCGAAGAGCTGCTAGAATAATTGGACT
CTCGGATGAAGCGACCTCGCGTAGTAAGCGAGCCATACAATTCGGATCGA
GAAGTCGACATGTTCTCGAACGGAAAAATGTTTCGCCACCAATCGTCAAC
CGAACACATCCCTGA
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