Gchil7291.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7291.t1
Unique Name	Gchil7291.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	795

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:969036..971420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4536.ONIVA06G04600.2
PFAMs	Cullin,Cullin_Nedd8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03869
KEGG Pathway	ko04120,ko04340,ko04341,map04120,map04340,map04341
KEGG Module	M00384
GOs	GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009909,GO:0009911,GO:0019899,GO:0031461,GO:0031625,GO:0032991,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0065007,GO:1902494,GO:1990234,GO:2000026,GO:2000241,GO:2000243
Evalue	1.05e-209
EggNOG OGs	COG5647@1\|root,KOG2166@2759\|Eukaryota,37I6E@33090\|Viridiplantae,3GEGV@35493\|Streptophyta,3KRMK@4447\|Liliopsida,3I2DA@38820\|Poales
Description	Belongs to the cullin family
COG category	D
BRITE	ko00000,ko00001,ko00002,ko03400,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7291	Gchil7291	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 969036..971420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7291.t1.start1	Gchil7291.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 969036..969038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7291.t1.CDS1	Gchil7291.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 969036..971420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7291.t1.exon1	Gchil7291.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 969036..971420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7291.t1.stop1	Gchil7291.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 971418..971420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7291.t1	Gchil7291.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 969036..971420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:969036..971420+
coding sequence from alignment at tig00004441_pilon:969036..971420+

mRNA sequence

>Gchil7291.t1 ID=Gchil7291.t1|Name=Gchil7291.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp
MARKNSGRFVISCFPQPVQLDPHFPEKTWQTLEHAINEINKRNISNLSFE
QLYRYSYNMVLHKHGDYLYNGLTRLQTDHLNSVADIIKRTEPPAFLAEIK
RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDEIVHHPS
ILPRLSETLLESIDKERNGESIDSLLVKSVTRMLAELGRDDAGKSVYETV
FEDGFLKRTGQFYAREATLYLSETTCSEYLRKANQRINEERMRVECYLEL
ETAPRVRRVAETELISKYMNKLINMENSGLIWMLRNDKVEDLKLMYTLFK
GVKDGEEEVRSHLKQEVLERGNEIIQDPGNIRDPIALINAILTLREKYDR
ITNNAFTTASEKSPPSSSNYEALAKVLNESQGRNSLDTVYSRQNGGSKND
ALGGIQSRGEIVPDKRFVSAVNDAFERFVNGFNRVAEYLSLYVDKLLRKD
FKGLSDDEVESKLEAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTCSD
AERSFITKMKTDCGYLYTSKMEIMFNDMKTSDESTSQFREKVVQEAIDMR
GIDLRVFVLTTMSWPVPQVPVVNLPEDAVHCSSKFEEFYYHKHDGRRLTW
QQSLGTAEIRATFGTRVYDLYSVSAYAMCILLLFNDNDSLTYKEIADATL
ISESELIRHLQSLSLAKHKVLKKEPREKEVKPDDKFIFNADFQSRSRRIK
MQVVTAKKENEAERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIA
EVTRELEPKFEPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA*

spliced messenger RNA

>Gchil7291.t1 ID=Gchil7291.t1|Name=Gchil7291.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2385bp|location=Sequence derived from alignment at tig00004441_pilon:969036..971420+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGTAAGAACTCGGGCCGCTTCGTTATCTCGTGCTTCCCCCAACC
AGTTCAGCTTGACCCCCATTTTCCGGAAAAGACGTGGCAGACGCTTGAAC
ATGCCATCAATGAAATTAACAAACGCAATATTTCGAACCTCTCGTTTGAA
CAGTTGTATCGCTACTCGTACAACATGGTGCTTCACAAACACGGCGACTA
TCTGTATAATGGTCTGACCCGTCTGCAAACAGACCATCTCAATTCGGTTG
CAGATATCATCAAACGTACCGAACCTCCTGCGTTTCTCGCAGAGATTAAG
CGTCAATGGACGTGGTTTGAAATTAGTCTTTCCCATGTGCGCGAGGTGCT
GATGTATATGGATCGTCACTATGTCAAACCAAAGAAGAAGAAGAACGTTC
ATGAGCTTGGACTCGCCCTTTTTCGAGATGAAATTGTCCATCATCCTTCT
ATTCTTCCTCGTTTATCGGAAACCCTCCTGGAAAGCATAGATAAGGAACG
TAACGGTGAATCTATTGACTCTTTGCTCGTCAAGAGCGTCACCAGGATGC
TTGCTGAACTAGGCCGAGATGATGCTGGAAAGTCTGTCTATGAGACCGTG
TTTGAAGACGGCTTTCTTAAACGCACAGGCCAGTTTTATGCGAGGGAAGC
TACTTTGTACCTTTCTGAGACAACATGTTCTGAATATTTGCGAAAAGCGA
ACCAACGCATAAATGAGGAGCGAATGAGGGTTGAGTGCTATTTGGAACTA
GAAACAGCCCCTCGAGTGCGTCGTGTTGCTGAGACGGAGCTTATTTCCAA
GTATATGAACAAACTCATCAACATGGAAAACTCTGGCCTCATCTGGATGC
TACGCAACGACAAAGTTGAAGATCTCAAGCTCATGTATACTCTTTTCAAG
GGTGTAAAGGATGGCGAAGAAGAGGTCCGAAGTCATTTAAAGCAAGAAGT
GCTCGAGAGGGGAAATGAAATAATCCAGGACCCTGGAAACATTCGAGATC
CCATTGCTCTCATAAACGCCATTCTTACCTTGAGAGAGAAGTACGATCGT
ATTACCAACAATGCTTTCACGACTGCATCCGAAAAAAGCCCACCATCTTC
ATCTAATTACGAAGCCTTGGCAAAAGTCCTTAATGAATCTCAAGGCAGAA
ATTCTTTGGATACTGTCTATAGCCGACAAAACGGCGGGTCCAAAAACGAC
GCACTTGGTGGTATTCAATCGCGAGGCGAAATTGTTCCGGACAAACGCTT
CGTTTCGGCGGTCAATGATGCATTTGAACGGTTTGTTAACGGCTTTAACC
GAGTAGCCGAGTATCTTTCGCTGTACGTCGACAAGCTCCTACGGAAAGAT
TTCAAAGGACTATCCGACGATGAAGTGGAATCGAAGTTAGAAGCTGTGAT
GGCCTTGTTCCGATATCTGAGCGACAAAGATGTTTTCGAACGATATTACA
AGCAGCACTTGCAAAAACGGTTACTCTATTCGCGATCAACCTGTTCCGAC
GCGGAGCGAAGCTTCATCACTAAGATGAAGACCGACTGTGGGTACTTATA
CACCTCGAAAATGGAAATTATGTTCAACGATATGAAGACCAGTGACGAAA
GCACCTCCCAGTTCAGAGAAAAAGTTGTCCAAGAAGCTATCGAcatgcga
ggaattgatttgagggtttttgtactcaccactatgagctggcctgttcc
tcaggtgccagttgttaatcttccagaagatgctgttcaCTGTTCGTCAA
AGTTTGAGGAATTTTATTATCACAAGCACGATGGACGACGGTTAACATGG
CAGCAATCCCTCGGAACCGCAGAAATCCGGGCTACTTTTGGCACTCGTGT
TTACGATCTTTATTCGGTATCGGCCTACGCTATGTGTATTCTCTTATTAT
TCAACGACAACGACAGTCTAACTTACAAAGAAATCGCTGACGCCACACTC
ATTTCCGAATCTGAGCTTATCAGACATTTGCAGAGTCTATCTCTGGCAAA
GCACAAGGTTTTAAAGAAAGAACCGCGCGAAAAAGAAGTGAAGCCAGATG
ACAAATTTATTTTCAACGCCGACTTTCAAAGTCGAAGCCGAAGAATTAAA
ATGCAAGTAGTTACAGCTAAAAAAGAGAACGAAGCTGAAAGAAACCATAC
GCGCTGTCGCATTAACGCGGATCGGGGCCCTGTCATAGATACAGTTGTCG
TGCGCATAATGAAACACCGAAAGACCTTAGAGCACAACAGGCTGATAGCt
gaagtcacccgagagctggagccgaagttcgaaccaaatacccaggagat
aaagaagagaattgaaagtctagtagagagggaatacttggagagacaga
aggataagagacaggtataccagtatgtagcatga

protein sequence of Gchil7291.t1

>Gchil7291.t1 ID=Gchil7291.t1|Name=Gchil7291.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=795bp
MARKNSGRFVISCFPQPVQLDPHFPEKTWQTLEHAINEINKRNISNLSFE
QLYRYSYNMVLHKHGDYLYNGLTRLQTDHLNSVADIIKRTEPPAFLAEIK
RQWTWFEISLSHVREVLMYMDRHYVKPKKKKNVHELGLALFRDEIVHHPS
ILPRLSETLLESIDKERNGESIDSLLVKSVTRMLAELGRDDAGKSVYETV
FEDGFLKRTGQFYAREATLYLSETTCSEYLRKANQRINEERMRVECYLEL
ETAPRVRRVAETELISKYMNKLINMENSGLIWMLRNDKVEDLKLMYTLFK
GVKDGEEEVRSHLKQEVLERGNEIIQDPGNIRDPIALINAILTLREKYDR
ITNNAFTTASEKSPPSSSNYEALAKVLNESQGRNSLDTVYSRQNGGSKND
ALGGIQSRGEIVPDKRFVSAVNDAFERFVNGFNRVAEYLSLYVDKLLRKD
FKGLSDDEVESKLEAVMALFRYLSDKDVFERYYKQHLQKRLLYSRSTCSD
AERSFITKMKTDCGYLYTSKMEIMFNDMKTSDESTSQFREKVVQEAIDMR
GIDLRVFVLTTMSWPVPQVPVVNLPEDAVHCSSKFEEFYYHKHDGRRLTW
QQSLGTAEIRATFGTRVYDLYSVSAYAMCILLLFNDNDSLTYKEIADATL
ISESELIRHLQSLSLAKHKVLKKEPREKEVKPDDKFIFNADFQSRSRRIK
MQVVTAKKENEAERNHTRCRINADRGPVIDTVVVRIMKHRKTLEHNRLIA
EVTRELEPKFEPNTQEIKKRIESLVEREYLERQKDKRQVYQYVA*

mRNA from alignment at tig00004441_pilon:969036..971420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7291.t1 ID=Gchil7291.t1|Name=Gchil7291.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2385bp|location=Sequence derived from alignment at tig00004441_pilon:969036..971420+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTAAGAACTCGGGCCGCTTCGTTATCTCGTGCTTCCCCCAACC
AGTTCAGCTTGACCCCCATTTTCCGGAAAAGACGTGGCAGACGCTTGAAC
ATGCCATCAATGAAATTAACAAACGCAATATTTCGAACCTCTCGTTTGAA
CAGTTGTATCGCTACTCGTACAACATGGTGCTTCACAAACACGGCGACTA
TCTGTATAATGGTCTGACCCGTCTGCAAACAGACCATCTCAATTCGGTTG
CAGATATCATCAAACGTACCGAACCTCCTGCGTTTCTCGCAGAGATTAAG
CGTCAATGGACGTGGTTTGAAATTAGTCTTTCCCATGTGCGCGAGGTGCT
GATGTATATGGATCGTCACTATGTCAAACCAAAGAAGAAGAAGAACGTTC
ATGAGCTTGGACTCGCCCTTTTTCGAGATGAAATTGTCCATCATCCTTCT
ATTCTTCCTCGTTTATCGGAAACCCTCCTGGAAAGCATAGATAAGGAACG
TAACGGTGAATCTATTGACTCTTTGCTCGTCAAGAGCGTCACCAGGATGC
TTGCTGAACTAGGCCGAGATGATGCTGGAAAGTCTGTCTATGAGACCGTG
TTTGAAGACGGCTTTCTTAAACGCACAGGCCAGTTTTATGCGAGGGAAGC
TACTTTGTACCTTTCTGAGACAACATGTTCTGAATATTTGCGAAAAGCGA
ACCAACGCATAAATGAGGAGCGAATGAGGGTTGAGTGCTATTTGGAACTA
GAAACAGCCCCTCGAGTGCGTCGTGTTGCTGAGACGGAGCTTATTTCCAA
GTATATGAACAAACTCATCAACATGGAAAACTCTGGCCTCATCTGGATGC
TACGCAACGACAAAGTTGAAGATCTCAAGCTCATGTATACTCTTTTCAAG
GGTGTAAAGGATGGCGAAGAAGAGGTCCGAAGTCATTTAAAGCAAGAAGT
GCTCGAGAGGGGAAATGAAATAATCCAGGACCCTGGAAACATTCGAGATC
CCATTGCTCTCATAAACGCCATTCTTACCTTGAGAGAGAAGTACGATCGT
ATTACCAACAATGCTTTCACGACTGCATCCGAAAAAAGCCCACCATCTTC
ATCTAATTACGAAGCCTTGGCAAAAGTCCTTAATGAATCTCAAGGCAGAA
ATTCTTTGGATACTGTCTATAGCCGACAAAACGGCGGGTCCAAAAACGAC
GCACTTGGTGGTATTCAATCGCGAGGCGAAATTGTTCCGGACAAACGCTT
CGTTTCGGCGGTCAATGATGCATTTGAACGGTTTGTTAACGGCTTTAACC
GAGTAGCCGAGTATCTTTCGCTGTACGTCGACAAGCTCCTACGGAAAGAT
TTCAAAGGACTATCCGACGATGAAGTGGAATCGAAGTTAGAAGCTGTGAT
GGCCTTGTTCCGATATCTGAGCGACAAAGATGTTTTCGAACGATATTACA
AGCAGCACTTGCAAAAACGGTTACTCTATTCGCGATCAACCTGTTCCGAC
GCGGAGCGAAGCTTCATCACTAAGATGAAGACCGACTGTGGGTACTTATA
CACCTCGAAAATGGAAATTATGTTCAACGATATGAAGACCAGTGACGAAA
GCACCTCCCAGTTCAGAGAAAAAGTTGTCCAAGAAGCTATCGAcatgcga
ggaattgatttgagggtttttgtactcaccactatgagctggcctgttcc
tcaggtgccagttgttaatcttccagaagatgctgttcaCTGTTCGTCAA
AGTTTGAGGAATTTTATTATCACAAGCACGATGGACGACGGTTAACATGG
CAGCAATCCCTCGGAACCGCAGAAATCCGGGCTACTTTTGGCACTCGTGT
TTACGATCTTTATTCGGTATCGGCCTACGCTATGTGTATTCTCTTATTAT
TCAACGACAACGACAGTCTAACTTACAAAGAAATCGCTGACGCCACACTC
ATTTCCGAATCTGAGCTTATCAGACATTTGCAGAGTCTATCTCTGGCAAA
GCACAAGGTTTTAAAGAAAGAACCGCGCGAAAAAGAAGTGAAGCCAGATG
ACAAATTTATTTTCAACGCCGACTTTCAAAGTCGAAGCCGAAGAATTAAA
ATGCAAGTAGTTACAGCTAAAAAAGAGAACGAAGCTGAAAGAAACCATAC
GCGCTGTCGCATTAACGCGGATCGGGGCCCTGTCATAGATACAGTTGTCG
TGCGCATAATGAAACACCGAAAGACCTTAGAGCACAACAGGCTGATAGCt
gaagtcacccgagagctggagccgaagttcgaaccaaatacccaggagat
aaagaagagaattgaaagtctagtagagagggaatacttggagagacaga
aggataagagacaggtataccagtatgtagcatga

Coding sequence (CDS) from alignment at tig00004441_pilon:969036..971420+

>Gchil7291.t1 ID=Gchil7291.t1|Name=Gchil7291.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2385bp|location=Sequence derived from alignment at tig00004441_pilon:969036..971420+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTAAGAACTCGGGCCGCTTCGTTATCTCGTGCTTCCCCCAACC
AGTTCAGCTTGACCCCCATTTTCCGGAAAAGACGTGGCAGACGCTTGAAC
ATGCCATCAATGAAATTAACAAACGCAATATTTCGAACCTCTCGTTTGAA
CAGTTGTATCGCTACTCGTACAACATGGTGCTTCACAAACACGGCGACTA
TCTGTATAATGGTCTGACCCGTCTGCAAACAGACCATCTCAATTCGGTTG
CAGATATCATCAAACGTACCGAACCTCCTGCGTTTCTCGCAGAGATTAAG
CGTCAATGGACGTGGTTTGAAATTAGTCTTTCCCATGTGCGCGAGGTGCT
GATGTATATGGATCGTCACTATGTCAAACCAAAGAAGAAGAAGAACGTTC
ATGAGCTTGGACTCGCCCTTTTTCGAGATGAAATTGTCCATCATCCTTCT
ATTCTTCCTCGTTTATCGGAAACCCTCCTGGAAAGCATAGATAAGGAACG
TAACGGTGAATCTATTGACTCTTTGCTCGTCAAGAGCGTCACCAGGATGC
TTGCTGAACTAGGCCGAGATGATGCTGGAAAGTCTGTCTATGAGACCGTG
TTTGAAGACGGCTTTCTTAAACGCACAGGCCAGTTTTATGCGAGGGAAGC
TACTTTGTACCTTTCTGAGACAACATGTTCTGAATATTTGCGAAAAGCGA
ACCAACGCATAAATGAGGAGCGAATGAGGGTTGAGTGCTATTTGGAACTA
GAAACAGCCCCTCGAGTGCGTCGTGTTGCTGAGACGGAGCTTATTTCCAA
GTATATGAACAAACTCATCAACATGGAAAACTCTGGCCTCATCTGGATGC
TACGCAACGACAAAGTTGAAGATCTCAAGCTCATGTATACTCTTTTCAAG
GGTGTAAAGGATGGCGAAGAAGAGGTCCGAAGTCATTTAAAGCAAGAAGT
GCTCGAGAGGGGAAATGAAATAATCCAGGACCCTGGAAACATTCGAGATC
CCATTGCTCTCATAAACGCCATTCTTACCTTGAGAGAGAAGTACGATCGT
ATTACCAACAATGCTTTCACGACTGCATCCGAAAAAAGCCCACCATCTTC
ATCTAATTACGAAGCCTTGGCAAAAGTCCTTAATGAATCTCAAGGCAGAA
ATTCTTTGGATACTGTCTATAGCCGACAAAACGGCGGGTCCAAAAACGAC
GCACTTGGTGGTATTCAATCGCGAGGCGAAATTGTTCCGGACAAACGCTT
CGTTTCGGCGGTCAATGATGCATTTGAACGGTTTGTTAACGGCTTTAACC
GAGTAGCCGAGTATCTTTCGCTGTACGTCGACAAGCTCCTACGGAAAGAT
TTCAAAGGACTATCCGACGATGAAGTGGAATCGAAGTTAGAAGCTGTGAT
GGCCTTGTTCCGATATCTGAGCGACAAAGATGTTTTCGAACGATATTACA
AGCAGCACTTGCAAAAACGGTTACTCTATTCGCGATCAACCTGTTCCGAC
GCGGAGCGAAGCTTCATCACTAAGATGAAGACCGACTGTGGGTACTTATA
CACCTCGAAAATGGAAATTATGTTCAACGATATGAAGACCAGTGACGAAA
GCACCTCCCAGTTCAGAGAAAAAGTTGTCCAAGAAGCTATCGAcatgcga
ggaattgatttgagggtttttgtactcaccactatgagctggcctgttcc
tcaggtgccagttgttaatcttccagaagatgctgttcaCTGTTCGTCAA
AGTTTGAGGAATTTTATTATCACAAGCACGATGGACGACGGTTAACATGG
CAGCAATCCCTCGGAACCGCAGAAATCCGGGCTACTTTTGGCACTCGTGT
TTACGATCTTTATTCGGTATCGGCCTACGCTATGTGTATTCTCTTATTAT
TCAACGACAACGACAGTCTAACTTACAAAGAAATCGCTGACGCCACACTC
ATTTCCGAATCTGAGCTTATCAGACATTTGCAGAGTCTATCTCTGGCAAA
GCACAAGGTTTTAAAGAAAGAACCGCGCGAAAAAGAAGTGAAGCCAGATG
ACAAATTTATTTTCAACGCCGACTTTCAAAGTCGAAGCCGAAGAATTAAA
ATGCAAGTAGTTACAGCTAAAAAAGAGAACGAAGCTGAAAGAAACCATAC
GCGCTGTCGCATTAACGCGGATCGGGGCCCTGTCATAGATACAGTTGTCG
TGCGCATAATGAAACACCGAAAGACCTTAGAGCACAACAGGCTGATAGCt
gaagtcacccgagagctggagccgaagttcgaaccaaatacccaggagat
aaagaagagaattgaaagtctagtagagagggaatacttggagagacaga
aggataagagacaggtataccagtatgtagcatga