Gchil7285.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7285.t1
Unique Name	Gchil7285.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:956747..958642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707863.1
Preferred name	SDH1
PFAMs	FAD_binding_2,Succ_DH_flav_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00045
KEGG ko	ko:K00234
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00009,M00011,M00148
GOs	GO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017076,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0030312,GO:0030554,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0046956,GO:0050896,GO:0050897,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0097159,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990204
Evalue	0.0
EggNOG OGs	COG1053@1\|root,KOG2403@2759\|Eukaryota
EC	1.3.5.1
Description	anaerobic respiration
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7285	Gchil7285	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 956747..958642 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7285.t1.start1	Gchil7285.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 956747..956749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7285.t1.CDS1	Gchil7285.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 956747..958642 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7285.t1.exon1	Gchil7285.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 956747..958642 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7285.t1.stop1	Gchil7285.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 958640..958642 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7285.t1	Gchil7285.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 956747..958642 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:956747..958642+
coding sequence from alignment at tig00004441_pilon:956747..958642+

mRNA sequence

>Gchil7285.t1 ID=Gchil7285.t1|Name=Gchil7285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=632bp
MLRAASSRLLPRVPAAARRLSTATTTIGGYDVIDHHVDVVVVGAGGAGLR
ATIGACEAGLNTACVTKLFPTRSHTVAAQGGINGALGNMTQDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPQTIIELERYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGIIALCMEDGSLHRFNAHATIIATGGYGRCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGVYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTMEIREGRGVGRDKDHIFLHLDHLEP
AVLKERLPGITETAKIFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDPNSVVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPSDGGEQAIADMDKVRYADGDLRTSHIRINMQRIMQDH
AAVFRTDESLKEGCDKMDECYESFGSVKTSDRDMIFNTDLVETLELRNLL
QNALVTMHSAEARKESRGAHAREDFTERDDEEWMKHTLGWVSDHTHKKYE
RGFVHIDYRPVINSSLDDEEQEAFPPAKRTY*

spliced messenger RNA

>Gchil7285.t1 ID=Gchil7285.t1|Name=Gchil7285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00004441_pilon:956747..958642+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGAgccgcctcatcccgcctgctgccgcgggtgcccgccgccgc
gcgccgcctgtccaccgcAACCACCACTATCGGCGGTTATGACGTCATCG
ACCATCACGTGGACGTCGTCGTCGTGGGCGCAGGCGGCGCCGGTCTGCGC
GCCACCATCGGCGCCTGCGAGGCGGGACTCAACACAGCCTGTGTCACAAA
GCTCTTTCCCACGCGTTCGCACACCGTCGCCGCCCAGGGCGGCATCAATG
GCGCCTTGGGCAACATGACGCAGGACGATTGGAGGTGGCACATGTACGAC
ACCGTCAAAGGCTCCGACTGGCTTGGCGACCAGGATGCCATCCACTACAT
GTGTCGCGAGGCCCCGCAAACTATCATCGAGCTTGAACGCTACGGCGTCC
CCTTCAGTCGCACTGAGGACGGCCTTATCTACCAACGAGCCTTTGGCGGT
CAGTCCCTCGACTTTGGAAAGGGCGGACAGGCCTATCGTTGCGCCGCCGC
CGCCGATCGCACGGGACATGCCATGCTACACACGCTGTATGGTCAATCCC
TCAAGCACGATGCCAACTTTTTCGTCGAGTACTTTGCGCTTGACCTCATC
ATGGACCCGCATGACGGCTCCTGTCGCGGCATCATCGCCCTGTGCATGGA
GGATGGTTCATTACATCGCTTCAACGCCCATGCAACCATCATAGCCACGG
GCGGATATGGCCGTTGCTACTTCAGCGCCACCTCGGCGCACACCTGCACG
GGCGACGGCAACGCCATGGTGGCGCGCGCTGGAATCCCGTTGCAGGACCT
CGAGTTTGTGCAGTTCCACCCCACCGGCGTGTACGGCGCGGGCTGTCTCA
TCACGGAGGGCGCGCGCGGCGAAGGCGGCTTCCTCAAGAACGCCAACGGC
GAGCGCTTCATGGAGCGATACGCGCCCTCCGCCAAGGACCTGGCCTCGCG
CGACGTGGTGTCGCGTTCCATGACCATGGAGATTCGCGAGGGACGCGGCG
TCGGCCGCGATAAGGACCACATCTTCCTTCACCTGGACCACTTGGAGCCG
GCCGTGCTCAAGGAGCGTTTGCCGGGCATCACGGAGACTGCCAAAATCTT
TGCAGGCGTGGACGTGCACAAGGAGCCCATCCCGGTGCTGCCCACCGTGC
ACTACAACATGGGTGGCATTCCGACTAACTGGCGCGGCGAGGTGGTCACG
CTCAAGGACGGCGACCCCAACTCTGTGGTGCCAGGGCTGTTGGCGGCTGG
CGAGGCGGCGTGCGCCAGTGTGCACGGCGCCAATCGACTCGGCGCCAACT
CGCTGTTGGACATTGTGGTGTTCGGACGCGCCACGGCCAAGCGCGTGGCT
GAGTTGGTGAAGCCTAACAGCGCGCACCGCCCGCTGCCTAGCGACGGCGG
CGAACAGGCGATTGCGGATATGGACAAGGTGCGGTACGCCGACGGTGACT
TGCGTACGTCGCACATTCGAATTAACATGCAGCGCATCATGCAGGACCAC
GCGGCGGTGTTTCGCACAGACGAGAGTCTCAAGGAAGGGTGCGACAAGAT
GGACGAGTGTTACGAGAGCTTTGGGTCGGTCAAGACGAGCGACCGAGACA
TGATCTTTAATACAGACTTGGTGGAGACGCTCGAGTTGCGCAATCTGCTG
CAGAACGCGTTGGTTACCATGCACAGCGCTGAAGCACGCAAGGAGAGTCG
TGGCGCACACGCGCGCGAAGACTTTACCGAACGTGACGATGAAGAGTGGA
TGAAACACACGTTGGGTTGGGTGAGCGACCACACGCACAAAAAGTACGAG
CGCGGGTTTGTGCATATCGACTACCGACCGGTGATCAACAGCAGCCTGGA
CGACGAGGAGCAGGAGGCGTTCCCGCCTGCCAAGCGCACGTACTAG

protein sequence of Gchil7285.t1

>Gchil7285.t1 ID=Gchil7285.t1|Name=Gchil7285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=632bp
MLRAASSRLLPRVPAAARRLSTATTTIGGYDVIDHHVDVVVVGAGGAGLR
ATIGACEAGLNTACVTKLFPTRSHTVAAQGGINGALGNMTQDDWRWHMYD
TVKGSDWLGDQDAIHYMCREAPQTIIELERYGVPFSRTEDGLIYQRAFGG
QSLDFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKHDANFFVEYFALDLI
MDPHDGSCRGIIALCMEDGSLHRFNAHATIIATGGYGRCYFSATSAHTCT
GDGNAMVARAGIPLQDLEFVQFHPTGVYGAGCLITEGARGEGGFLKNANG
ERFMERYAPSAKDLASRDVVSRSMTMEIREGRGVGRDKDHIFLHLDHLEP
AVLKERLPGITETAKIFAGVDVHKEPIPVLPTVHYNMGGIPTNWRGEVVT
LKDGDPNSVVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRATAKRVA
ELVKPNSAHRPLPSDGGEQAIADMDKVRYADGDLRTSHIRINMQRIMQDH
AAVFRTDESLKEGCDKMDECYESFGSVKTSDRDMIFNTDLVETLELRNLL
QNALVTMHSAEARKESRGAHAREDFTERDDEEWMKHTLGWVSDHTHKKYE
RGFVHIDYRPVINSSLDDEEQEAFPPAKRTY*

mRNA from alignment at tig00004441_pilon:956747..958642+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7285.t1 ID=Gchil7285.t1|Name=Gchil7285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1896bp|location=Sequence derived from alignment at tig00004441_pilon:956747..958642+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGAgccgcctcatcccgcctgctgccgcgggtgcccgccgccgc
gcgccgcctgtccaccgcAACCACCACTATCGGCGGTTATGACGTCATCG
ACCATCACGTGGACGTCGTCGTCGTGGGCGCAGGCGGCGCCGGTCTGCGC
GCCACCATCGGCGCCTGCGAGGCGGGACTCAACACAGCCTGTGTCACAAA
GCTCTTTCCCACGCGTTCGCACACCGTCGCCGCCCAGGGCGGCATCAATG
GCGCCTTGGGCAACATGACGCAGGACGATTGGAGGTGGCACATGTACGAC
ACCGTCAAAGGCTCCGACTGGCTTGGCGACCAGGATGCCATCCACTACAT
GTGTCGCGAGGCCCCGCAAACTATCATCGAGCTTGAACGCTACGGCGTCC
CCTTCAGTCGCACTGAGGACGGCCTTATCTACCAACGAGCCTTTGGCGGT
CAGTCCCTCGACTTTGGAAAGGGCGGACAGGCCTATCGTTGCGCCGCCGC
CGCCGATCGCACGGGACATGCCATGCTACACACGCTGTATGGTCAATCCC
TCAAGCACGATGCCAACTTTTTCGTCGAGTACTTTGCGCTTGACCTCATC
ATGGACCCGCATGACGGCTCCTGTCGCGGCATCATCGCCCTGTGCATGGA
GGATGGTTCATTACATCGCTTCAACGCCCATGCAACCATCATAGCCACGG
GCGGATATGGCCGTTGCTACTTCAGCGCCACCTCGGCGCACACCTGCACG
GGCGACGGCAACGCCATGGTGGCGCGCGCTGGAATCCCGTTGCAGGACCT
CGAGTTTGTGCAGTTCCACCCCACCGGCGTGTACGGCGCGGGCTGTCTCA
TCACGGAGGGCGCGCGCGGCGAAGGCGGCTTCCTCAAGAACGCCAACGGC
GAGCGCTTCATGGAGCGATACGCGCCCTCCGCCAAGGACCTGGCCTCGCG
CGACGTGGTGTCGCGTTCCATGACCATGGAGATTCGCGAGGGACGCGGCG
TCGGCCGCGATAAGGACCACATCTTCCTTCACCTGGACCACTTGGAGCCG
GCCGTGCTCAAGGAGCGTTTGCCGGGCATCACGGAGACTGCCAAAATCTT
TGCAGGCGTGGACGTGCACAAGGAGCCCATCCCGGTGCTGCCCACCGTGC
ACTACAACATGGGTGGCATTCCGACTAACTGGCGCGGCGAGGTGGTCACG
CTCAAGGACGGCGACCCCAACTCTGTGGTGCCAGGGCTGTTGGCGGCTGG
CGAGGCGGCGTGCGCCAGTGTGCACGGCGCCAATCGACTCGGCGCCAACT
CGCTGTTGGACATTGTGGTGTTCGGACGCGCCACGGCCAAGCGCGTGGCT
GAGTTGGTGAAGCCTAACAGCGCGCACCGCCCGCTGCCTAGCGACGGCGG
CGAACAGGCGATTGCGGATATGGACAAGGTGCGGTACGCCGACGGTGACT
TGCGTACGTCGCACATTCGAATTAACATGCAGCGCATCATGCAGGACCAC
GCGGCGGTGTTTCGCACAGACGAGAGTCTCAAGGAAGGGTGCGACAAGAT
GGACGAGTGTTACGAGAGCTTTGGGTCGGTCAAGACGAGCGACCGAGACA
TGATCTTTAATACAGACTTGGTGGAGACGCTCGAGTTGCGCAATCTGCTG
CAGAACGCGTTGGTTACCATGCACAGCGCTGAAGCACGCAAGGAGAGTCG
TGGCGCACACGCGCGCGAAGACTTTACCGAACGTGACGATGAAGAGTGGA
TGAAACACACGTTGGGTTGGGTGAGCGACCACACGCACAAAAAGTACGAG
CGCGGGTTTGTGCATATCGACTACCGACCGGTGATCAACAGCAGCCTGGA
CGACGAGGAGCAGGAGGCGTTCCCGCCTGCCAAGCGCACGTACTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:956747..958642+

>Gchil7285.t1 ID=Gchil7285.t1|Name=Gchil7285.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1896bp|location=Sequence derived from alignment at tig00004441_pilon:956747..958642+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGAgccgcctcatcccgcctgctgccgcgggtgcccgccgccgc
gcgccgcctgtccaccgcAACCACCACTATCGGCGGTTATGACGTCATCG
ACCATCACGTGGACGTCGTCGTCGTGGGCGCAGGCGGCGCCGGTCTGCGC
GCCACCATCGGCGCCTGCGAGGCGGGACTCAACACAGCCTGTGTCACAAA
GCTCTTTCCCACGCGTTCGCACACCGTCGCCGCCCAGGGCGGCATCAATG
GCGCCTTGGGCAACATGACGCAGGACGATTGGAGGTGGCACATGTACGAC
ACCGTCAAAGGCTCCGACTGGCTTGGCGACCAGGATGCCATCCACTACAT
GTGTCGCGAGGCCCCGCAAACTATCATCGAGCTTGAACGCTACGGCGTCC
CCTTCAGTCGCACTGAGGACGGCCTTATCTACCAACGAGCCTTTGGCGGT
CAGTCCCTCGACTTTGGAAAGGGCGGACAGGCCTATCGTTGCGCCGCCGC
CGCCGATCGCACGGGACATGCCATGCTACACACGCTGTATGGTCAATCCC
TCAAGCACGATGCCAACTTTTTCGTCGAGTACTTTGCGCTTGACCTCATC
ATGGACCCGCATGACGGCTCCTGTCGCGGCATCATCGCCCTGTGCATGGA
GGATGGTTCATTACATCGCTTCAACGCCCATGCAACCATCATAGCCACGG
GCGGATATGGCCGTTGCTACTTCAGCGCCACCTCGGCGCACACCTGCACG
GGCGACGGCAACGCCATGGTGGCGCGCGCTGGAATCCCGTTGCAGGACCT
CGAGTTTGTGCAGTTCCACCCCACCGGCGTGTACGGCGCGGGCTGTCTCA
TCACGGAGGGCGCGCGCGGCGAAGGCGGCTTCCTCAAGAACGCCAACGGC
GAGCGCTTCATGGAGCGATACGCGCCCTCCGCCAAGGACCTGGCCTCGCG
CGACGTGGTGTCGCGTTCCATGACCATGGAGATTCGCGAGGGACGCGGCG
TCGGCCGCGATAAGGACCACATCTTCCTTCACCTGGACCACTTGGAGCCG
GCCGTGCTCAAGGAGCGTTTGCCGGGCATCACGGAGACTGCCAAAATCTT
TGCAGGCGTGGACGTGCACAAGGAGCCCATCCCGGTGCTGCCCACCGTGC
ACTACAACATGGGTGGCATTCCGACTAACTGGCGCGGCGAGGTGGTCACG
CTCAAGGACGGCGACCCCAACTCTGTGGTGCCAGGGCTGTTGGCGGCTGG
CGAGGCGGCGTGCGCCAGTGTGCACGGCGCCAATCGACTCGGCGCCAACT
CGCTGTTGGACATTGTGGTGTTCGGACGCGCCACGGCCAAGCGCGTGGCT
GAGTTGGTGAAGCCTAACAGCGCGCACCGCCCGCTGCCTAGCGACGGCGG
CGAACAGGCGATTGCGGATATGGACAAGGTGCGGTACGCCGACGGTGACT
TGCGTACGTCGCACATTCGAATTAACATGCAGCGCATCATGCAGGACCAC
GCGGCGGTGTTTCGCACAGACGAGAGTCTCAAGGAAGGGTGCGACAAGAT
GGACGAGTGTTACGAGAGCTTTGGGTCGGTCAAGACGAGCGACCGAGACA
TGATCTTTAATACAGACTTGGTGGAGACGCTCGAGTTGCGCAATCTGCTG
CAGAACGCGTTGGTTACCATGCACAGCGCTGAAGCACGCAAGGAGAGTCG
TGGCGCACACGCGCGCGAAGACTTTACCGAACGTGACGATGAAGAGTGGA
TGAAACACACGTTGGGTTGGGTGAGCGACCACACGCACAAAAAGTACGAG
CGCGGGTTTGTGCATATCGACTACCGACCGGTGATCAACAGCAGCCTGGA
CGACGAGGAGCAGGAGGCGTTCCCGCCTGCCAAGCGCACGTACTAG