Gchil7276.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7276.t1
Unique Name	Gchil7276.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:937598..938836 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706414.1
PFAMs	60KD_IMP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03217
KEGG TC	2.A.9
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue	3.25e-49
EggNOG OGs	COG0706@1\|root,KOG1239@2759\|Eukaryota
Description	membrane insertase activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7276	Gchil7276	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 937598..938836 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7276.t1.stop1	Gchil7276.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 937598..937600 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7276.t1.CDS1	Gchil7276.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 937598..938836 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7276.t1.exon1	Gchil7276.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 937598..938836 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7276.t1.start1	Gchil7276.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 938834..938836 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7276.t1	Gchil7276.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 937598..938836 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:937598..938836-
coding sequence from alignment at tig00004441_pilon:937598..938836-

mRNA sequence

>Gchil7276.t1 ID=Gchil7276.t1|Name=Gchil7276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=413bp
MNRLLLARLSAKTLRRSSSSRFPLLFENPRFLSTAPPAASVTTPNVVHAE
GNGTDHRVARPDAPNNIDPPSSAVDQSQIADLTTFENINVVTDAVPATDV
ATIGADIASSSFSLSDALLQPAVSLLHMTHDATNLPWYLAIAASTVMIRT
LLLPATIMTMKNSARMQAIQPDMMEKREVVMQAIKTGNRPLANTKQKELQ
EFMKNAGVAPAKVLIGPLAQFPVFISFFVSIRRLSQSDPSFVDGGAAWFT
DLSVMDPTYALPVVCAATLLGMTELGGDTGSTKMTPQMRTGMRAVAGLSL
PLTYWFPAAVFCYWIPNNLFSMALGVAMRTENIRRAIGLHVDPAFIPGTR
AWKEREAKMAVLARQAGLSKETNVEQVLASYGKQPTTRSDGTIAKPVLFK
QKPKKKINVATN*

spliced messenger RNA

>Gchil7276.t1 ID=Gchil7276.t1|Name=Gchil7276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00004441_pilon:937598..938836- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGACTTCTCCTTGCACGTCTCAGTGCGAAAACGCTGAGGAGATC
GTCATCCTCACGATTTCCACTGCTCTTTGAAAACCCGCGTTTTCTGTCTA
CAGCACCACCTGCAGCCTCAGTCACTACCCCGAACGTGGTGCATGCAGAG
GGAAATGGCACAGATCACCGCGTTGCTCGACCAGACGCTCCAAACAATAT
AGACCCACCATCTAGCGCTGTGGATCAATCCCAAATCGCTGACCTAACGA
CATTTGAAAACATCAATGTCGTGACAGATGCTGTGCCGGCAACTGACGTT
GCAACAATTGGCGCAGACATCGCCTCCTCATCGTTTTCGTTGTCAGACGC
TCTACTACAGCCCGCAGTCTCTCTCTTACACATGACTCATGACGCAACCA
ACCTCCCTTGGTACTTGGCGATTGCAGCTTCAACAGTGATGATACGCACC
CTACTATTACCAGCAACAATAATGACTATGAAAAACTCAGCGAGAATGCA
AGCAATACAGCCAGATATGATGGAAAAACGAGAAGTAGTCATGCAAGCCA
TCAAGACTGGCAATCGGCCTTTAGCTAATACAAAGCAAAAAGAGCTACAG
GAATTTATGAAGAACGCAGGGGTCGCTCCTGCTAAAGTCTTGATCGGTCC
CCTTGCCCAATTCCCTGTTTTCATTTCGTTTTTCGTTAGTATAAGACGTC
TATCACAATCCGATCCCAGCTTCGTGGATGGCGGCGCTGCATGGTTTACT
GATTTATCAGTCATGGATCCTACGTATGCTCTGCCAGTAGTTTGTGCCGC
GACCTTATTGGGGATGACCGAACTTGGAGGCGACACGGGCTCAACGAAGA
TGACTCCACAAATGCGAACCGGAATGAGAGCAGTCGCGGGATTGTCATTG
CCACTGACGTATTGGTTTCCAGCGGCTGTTTTCTGCTATTGGATACCAAA
TAACTTGTTCTCCATGGCGCTTGGTGTTGCAATGCGTACCGAGAACATTC
GAAGAGCAATTGGTCTTCATGTAGACCCGGCATTTATTCCAGGCACTCGT
GCTTGGAAAGAGCGCGAGGCGAAAATGGCTGTTCTAGCTAGGCAAGCTGG
TCTAAGCAAGGAAACCAACGTTGAGCAAGTGCTGGCAAGCTACGGAAAAC
AGCCTACAACTCGAAGCGATGGGACAATTGCGAAGCCCGTTCTGTTCAAA
CAAAAACCAAAGAAGAAGATCAATGTTGCTACGAATTGA

protein sequence of Gchil7276.t1

>Gchil7276.t1 ID=Gchil7276.t1|Name=Gchil7276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=413bp
MNRLLLARLSAKTLRRSSSSRFPLLFENPRFLSTAPPAASVTTPNVVHAE
GNGTDHRVARPDAPNNIDPPSSAVDQSQIADLTTFENINVVTDAVPATDV
ATIGADIASSSFSLSDALLQPAVSLLHMTHDATNLPWYLAIAASTVMIRT
LLLPATIMTMKNSARMQAIQPDMMEKREVVMQAIKTGNRPLANTKQKELQ
EFMKNAGVAPAKVLIGPLAQFPVFISFFVSIRRLSQSDPSFVDGGAAWFT
DLSVMDPTYALPVVCAATLLGMTELGGDTGSTKMTPQMRTGMRAVAGLSL
PLTYWFPAAVFCYWIPNNLFSMALGVAMRTENIRRAIGLHVDPAFIPGTR
AWKEREAKMAVLARQAGLSKETNVEQVLASYGKQPTTRSDGTIAKPVLFK
QKPKKKINVATN*

mRNA from alignment at tig00004441_pilon:937598..938836-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7276.t1 ID=Gchil7276.t1|Name=Gchil7276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00004441_pilon:937598..938836- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGACTTCTCCTTGCACGTCTCAGTGCGAAAACGCTGAGGAGATC
GTCATCCTCACGATTTCCACTGCTCTTTGAAAACCCGCGTTTTCTGTCTA
CAGCACCACCTGCAGCCTCAGTCACTACCCCGAACGTGGTGCATGCAGAG
GGAAATGGCACAGATCACCGCGTTGCTCGACCAGACGCTCCAAACAATAT
AGACCCACCATCTAGCGCTGTGGATCAATCCCAAATCGCTGACCTAACGA
CATTTGAAAACATCAATGTCGTGACAGATGCTGTGCCGGCAACTGACGTT
GCAACAATTGGCGCAGACATCGCCTCCTCATCGTTTTCGTTGTCAGACGC
TCTACTACAGCCCGCAGTCTCTCTCTTACACATGACTCATGACGCAACCA
ACCTCCCTTGGTACTTGGCGATTGCAGCTTCAACAGTGATGATACGCACC
CTACTATTACCAGCAACAATAATGACTATGAAAAACTCAGCGAGAATGCA
AGCAATACAGCCAGATATGATGGAAAAACGAGAAGTAGTCATGCAAGCCA
TCAAGACTGGCAATCGGCCTTTAGCTAATACAAAGCAAAAAGAGCTACAG
GAATTTATGAAGAACGCAGGGGTCGCTCCTGCTAAAGTCTTGATCGGTCC
CCTTGCCCAATTCCCTGTTTTCATTTCGTTTTTCGTTAGTATAAGACGTC
TATCACAATCCGATCCCAGCTTCGTGGATGGCGGCGCTGCATGGTTTACT
GATTTATCAGTCATGGATCCTACGTATGCTCTGCCAGTAGTTTGTGCCGC
GACCTTATTGGGGATGACCGAACTTGGAGGCGACACGGGCTCAACGAAGA
TGACTCCACAAATGCGAACCGGAATGAGAGCAGTCGCGGGATTGTCATTG
CCACTGACGTATTGGTTTCCAGCGGCTGTTTTCTGCTATTGGATACCAAA
TAACTTGTTCTCCATGGCGCTTGGTGTTGCAATGCGTACCGAGAACATTC
GAAGAGCAATTGGTCTTCATGTAGACCCGGCATTTATTCCAGGCACTCGT
GCTTGGAAAGAGCGCGAGGCGAAAATGGCTGTTCTAGCTAGGCAAGCTGG
TCTAAGCAAGGAAACCAACGTTGAGCAAGTGCTGGCAAGCTACGGAAAAC
AGCCTACAACTCGAAGCGATGGGACAATTGCGAAGCCCGTTCTGTTCAAA
CAAAAACCAAAGAAGAAGATCAATGTTGCTACGAATTGA

Coding sequence (CDS) from alignment at tig00004441_pilon:937598..938836-

>Gchil7276.t1 ID=Gchil7276.t1|Name=Gchil7276.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00004441_pilon:937598..938836- (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGACTTCTCCTTGCACGTCTCAGTGCGAAAACGCTGAGGAGATC
GTCATCCTCACGATTTCCACTGCTCTTTGAAAACCCGCGTTTTCTGTCTA
CAGCACCACCTGCAGCCTCAGTCACTACCCCGAACGTGGTGCATGCAGAG
GGAAATGGCACAGATCACCGCGTTGCTCGACCAGACGCTCCAAACAATAT
AGACCCACCATCTAGCGCTGTGGATCAATCCCAAATCGCTGACCTAACGA
CATTTGAAAACATCAATGTCGTGACAGATGCTGTGCCGGCAACTGACGTT
GCAACAATTGGCGCAGACATCGCCTCCTCATCGTTTTCGTTGTCAGACGC
TCTACTACAGCCCGCAGTCTCTCTCTTACACATGACTCATGACGCAACCA
ACCTCCCTTGGTACTTGGCGATTGCAGCTTCAACAGTGATGATACGCACC
CTACTATTACCAGCAACAATAATGACTATGAAAAACTCAGCGAGAATGCA
AGCAATACAGCCAGATATGATGGAAAAACGAGAAGTAGTCATGCAAGCCA
TCAAGACTGGCAATCGGCCTTTAGCTAATACAAAGCAAAAAGAGCTACAG
GAATTTATGAAGAACGCAGGGGTCGCTCCTGCTAAAGTCTTGATCGGTCC
CCTTGCCCAATTCCCTGTTTTCATTTCGTTTTTCGTTAGTATAAGACGTC
TATCACAATCCGATCCCAGCTTCGTGGATGGCGGCGCTGCATGGTTTACT
GATTTATCAGTCATGGATCCTACGTATGCTCTGCCAGTAGTTTGTGCCGC
GACCTTATTGGGGATGACCGAACTTGGAGGCGACACGGGCTCAACGAAGA
TGACTCCACAAATGCGAACCGGAATGAGAGCAGTCGCGGGATTGTCATTG
CCACTGACGTATTGGTTTCCAGCGGCTGTTTTCTGCTATTGGATACCAAA
TAACTTGTTCTCCATGGCGCTTGGTGTTGCAATGCGTACCGAGAACATTC
GAAGAGCAATTGGTCTTCATGTAGACCCGGCATTTATTCCAGGCACTCGT
GCTTGGAAAGAGCGCGAGGCGAAAATGGCTGTTCTAGCTAGGCAAGCTGG
TCTAAGCAAGGAAACCAACGTTGAGCAAGTGCTGGCAAGCTACGGAAAAC
AGCCTACAACTCGAAGCGATGGGACAATTGCGAAGCCCGTTCTGTTCAAA
CAAAAACCAAAGAAGAAGATCAATGTTGCTACGAATTGA