Gchil7264.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7264.t1
Unique Name	Gchil7264.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:905198..906451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM166CT
Preferred name	PSY
PFAMs	SQS_PSY
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00362,RC00438,RC00439,RC00603,RC00604,RC01004,RC01101,RC02869
KEGG ko	ko:K01623,ko:K02291,ko:K17841
KEGG Reaction	R01068,R01070,R01829,R02065,R02568,R03824,R04218,R05341,R07270,R10177,R10508
KEGG Pathway	ko00010,ko00030,ko00051,ko00680,ko00710,ko00906,ko01062,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map00906,map01062,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00001,M00003,M00097,M00165,M00167
GOs	GO:0003674,GO:0003824,GO:0004337,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016740,GO:0016765,GO:0016767,GO:0016853,GO:0016860,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0046246,GO:0046905,GO:0071704,GO:1901576
Evalue	1.17e-122
EggNOG OGs	COG1562@1\|root,KOG1459@2759\|Eukaryota
EC	2.5.1.32,2.5.1.99,4.1.2.13,5.5.1.19
Description	farnesyl-diphosphate farnesyltransferase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006,ko03036,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7264	Gchil7264	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 905198..906451 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7264.t1.start1	Gchil7264.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 905198..905200 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7264.t1.CDS1	Gchil7264.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 905198..906451 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7264.t1.exon1	Gchil7264.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 905198..906451 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7264.t1.stop1	Gchil7264.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 906449..906451 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7264.t1	Gchil7264.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 905198..906451 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:905198..906451+
coding sequence from alignment at tig00004441_pilon:905198..906451+

mRNA sequence

>Gchil7264.t1 ID=Gchil7264.t1|Name=Gchil7264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MVLDKPISPSNGVNWSKYQIESFDTMHTRLGIDKLWQVDTEPKNSATRSE
PSNVSELDGTLNEVLVTGGKLFSSRSTVPWDNTTGARGLSLLGRHMFFLR
KRQEMLKASYEECRRITEVFSKTFYLGTTFLCPEKRAAVWAIYAWCRRTD
DLVDGPRVQQRHDHLRSILSEWEQRLIGIFNGRARDNLDLALVDAMENYS
DITISPFRDMIRGMLMDVDQSRFQTFDDLYVYCYRVAGTVGLMTLPVMGT
VKPGREGLREAMGPALALGIGLQLTNILRDVGEDRLRGRIYIPLEDLRRF
NYTEEDLFNCVLDSRYRELMKFEIARARSYFKEARKGVHLLAEDSRLPVQ
TSLDMYSQILDVLEENGYDNFNRRAYVSKTQKLVTLPVSYLRCRTSEVWK
PLRIFAEFLLGVKQITT*

spliced messenger RNA

>Gchil7264.t1 ID=Gchil7264.t1|Name=Gchil7264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004441_pilon:905198..906451+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTAGACAAACCCATTAGTCCGAGCAACGGCGTGAATTGGAGCAA
GTATCAGATTGAGAGCTTCGATACAATGCACACCAGACTCGGTATTGACA
AATTGTGGCAAGTGGACACGGAACCAAAGAATTCAGCAACACGAAGTGAG
CCAAGTAATGTCTCAGAGCTCGATGGTACCTTAAATGAGGTGTTGGTGAC
TGGAGGTAAGCTCTTCTCAAGTCGTTCTACAGTTCCATGGGATAATACGA
CGGGCGCACGGGGGCTTAGCCTTTTGGGTCGCCACATGTTCTTTCTCCGG
AAGCGTCAGGAAATGTTGAAAGCAAGCTATGAGGAATGTCGACGCATCAC
TGAAGTATTTTCGAAAACCTTCTATTTGGGGACGACTTTCTTATGTCCTG
AGAAACGTGCAGCCGTCTGGGCCATATATGCATGGTGTAGGAGAACTGAT
GATCTTGTTGATGGACCGCGTGTGCAACAACGCCACGACCATCTTCGATC
AATTTTATCCGAATGGGAACAACGACTCATTGGTATTTTCAACGGGCGCG
CCAGGGACAACTTAGATCTCGCTTTAGTCGATGCTATGGAAAACTATTCA
GACATCACAATATCTCCGTTTCGCGACATGATCAGAGGTATGCTAATGGA
TGTCGACCAGTCTCGTTTCCAAACCTTTGACGATCTATACGTCTATTGCT
ATCGCGTCGCTGGTACTGTTGGACTAATGACGTTACCAGTAATGGGAACT
GTGAAGCCCGGACGCGAAGGCCTCCGAGAAGCAATGGGACCTGCCTTGGC
TCTTGGCATTGGACTACAATTGACCAACATCTTACGGGATGTCGGAGAAG
ATCGTTTGCGAGGTCGCATCTATATACCTCTGGAAGACTTGCGTCGCTTC
AACTATACAGAGGAAGATTTATTCAATTGCGTTCTTGACTCTAGATATCG
CGAGCTCATGAAGTTTGAGATTGCTCGAGCTCGAAGTTACTTCAAAGAAG
CACGTAAAGGTGTTCATCTACTGGCTGAGGACTCCAGACTCCCCGTTCAA
ACATCGCTTGATATGTACTCACAGATTCTTGATGTATTGGAAGAAAATGG
GTATGATAATTTCAACAGGCGCGCCTACGTGTCAAAAACGCAGAAGTTGG
TAACTTTACCCGTCAGCTACCTCCGATGTAGAACATCTGAAGTGTGGAAA
CCGTTACGAATTTTCGCCGAGTTTTTGCTGGGAGTAAAGCAGATCACAAC
TTAG

protein sequence of Gchil7264.t1

>Gchil7264.t1 ID=Gchil7264.t1|Name=Gchil7264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MVLDKPISPSNGVNWSKYQIESFDTMHTRLGIDKLWQVDTEPKNSATRSE
PSNVSELDGTLNEVLVTGGKLFSSRSTVPWDNTTGARGLSLLGRHMFFLR
KRQEMLKASYEECRRITEVFSKTFYLGTTFLCPEKRAAVWAIYAWCRRTD
DLVDGPRVQQRHDHLRSILSEWEQRLIGIFNGRARDNLDLALVDAMENYS
DITISPFRDMIRGMLMDVDQSRFQTFDDLYVYCYRVAGTVGLMTLPVMGT
VKPGREGLREAMGPALALGIGLQLTNILRDVGEDRLRGRIYIPLEDLRRF
NYTEEDLFNCVLDSRYRELMKFEIARARSYFKEARKGVHLLAEDSRLPVQ
TSLDMYSQILDVLEENGYDNFNRRAYVSKTQKLVTLPVSYLRCRTSEVWK
PLRIFAEFLLGVKQITT*

mRNA from alignment at tig00004441_pilon:905198..906451+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7264.t1 ID=Gchil7264.t1|Name=Gchil7264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004441_pilon:905198..906451+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTAGACAAACCCATTAGTCCGAGCAACGGCGTGAATTGGAGCAA
GTATCAGATTGAGAGCTTCGATACAATGCACACCAGACTCGGTATTGACA
AATTGTGGCAAGTGGACACGGAACCAAAGAATTCAGCAACACGAAGTGAG
CCAAGTAATGTCTCAGAGCTCGATGGTACCTTAAATGAGGTGTTGGTGAC
TGGAGGTAAGCTCTTCTCAAGTCGTTCTACAGTTCCATGGGATAATACGA
CGGGCGCACGGGGGCTTAGCCTTTTGGGTCGCCACATGTTCTTTCTCCGG
AAGCGTCAGGAAATGTTGAAAGCAAGCTATGAGGAATGTCGACGCATCAC
TGAAGTATTTTCGAAAACCTTCTATTTGGGGACGACTTTCTTATGTCCTG
AGAAACGTGCAGCCGTCTGGGCCATATATGCATGGTGTAGGAGAACTGAT
GATCTTGTTGATGGACCGCGTGTGCAACAACGCCACGACCATCTTCGATC
AATTTTATCCGAATGGGAACAACGACTCATTGGTATTTTCAACGGGCGCG
CCAGGGACAACTTAGATCTCGCTTTAGTCGATGCTATGGAAAACTATTCA
GACATCACAATATCTCCGTTTCGCGACATGATCAGAGGTATGCTAATGGA
TGTCGACCAGTCTCGTTTCCAAACCTTTGACGATCTATACGTCTATTGCT
ATCGCGTCGCTGGTACTGTTGGACTAATGACGTTACCAGTAATGGGAACT
GTGAAGCCCGGACGCGAAGGCCTCCGAGAAGCAATGGGACCTGCCTTGGC
TCTTGGCATTGGACTACAATTGACCAACATCTTACGGGATGTCGGAGAAG
ATCGTTTGCGAGGTCGCATCTATATACCTCTGGAAGACTTGCGTCGCTTC
AACTATACAGAGGAAGATTTATTCAATTGCGTTCTTGACTCTAGATATCG
CGAGCTCATGAAGTTTGAGATTGCTCGAGCTCGAAGTTACTTCAAAGAAG
CACGTAAAGGTGTTCATCTACTGGCTGAGGACTCCAGACTCCCCGTTCAA
ACATCGCTTGATATGTACTCACAGATTCTTGATGTATTGGAAGAAAATGG
GTATGATAATTTCAACAGGCGCGCCTACGTGTCAAAAACGCAGAAGTTGG
TAACTTTACCCGTCAGCTACCTCCGATGTAGAACATCTGAAGTGTGGAAA
CCGTTACGAATTTTCGCCGAGTTTTTGCTGGGAGTAAAGCAGATCACAAC
TTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:905198..906451+

>Gchil7264.t1 ID=Gchil7264.t1|Name=Gchil7264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00004441_pilon:905198..906451+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTTAGACAAACCCATTAGTCCGAGCAACGGCGTGAATTGGAGCAA
GTATCAGATTGAGAGCTTCGATACAATGCACACCAGACTCGGTATTGACA
AATTGTGGCAAGTGGACACGGAACCAAAGAATTCAGCAACACGAAGTGAG
CCAAGTAATGTCTCAGAGCTCGATGGTACCTTAAATGAGGTGTTGGTGAC
TGGAGGTAAGCTCTTCTCAAGTCGTTCTACAGTTCCATGGGATAATACGA
CGGGCGCACGGGGGCTTAGCCTTTTGGGTCGCCACATGTTCTTTCTCCGG
AAGCGTCAGGAAATGTTGAAAGCAAGCTATGAGGAATGTCGACGCATCAC
TGAAGTATTTTCGAAAACCTTCTATTTGGGGACGACTTTCTTATGTCCTG
AGAAACGTGCAGCCGTCTGGGCCATATATGCATGGTGTAGGAGAACTGAT
GATCTTGTTGATGGACCGCGTGTGCAACAACGCCACGACCATCTTCGATC
AATTTTATCCGAATGGGAACAACGACTCATTGGTATTTTCAACGGGCGCG
CCAGGGACAACTTAGATCTCGCTTTAGTCGATGCTATGGAAAACTATTCA
GACATCACAATATCTCCGTTTCGCGACATGATCAGAGGTATGCTAATGGA
TGTCGACCAGTCTCGTTTCCAAACCTTTGACGATCTATACGTCTATTGCT
ATCGCGTCGCTGGTACTGTTGGACTAATGACGTTACCAGTAATGGGAACT
GTGAAGCCCGGACGCGAAGGCCTCCGAGAAGCAATGGGACCTGCCTTGGC
TCTTGGCATTGGACTACAATTGACCAACATCTTACGGGATGTCGGAGAAG
ATCGTTTGCGAGGTCGCATCTATATACCTCTGGAAGACTTGCGTCGCTTC
AACTATACAGAGGAAGATTTATTCAATTGCGTTCTTGACTCTAGATATCG
CGAGCTCATGAAGTTTGAGATTGCTCGAGCTCGAAGTTACTTCAAAGAAG
CACGTAAAGGTGTTCATCTACTGGCTGAGGACTCCAGACTCCCCGTTCAA
ACATCGCTTGATATGTACTCACAGATTCTTGATGTATTGGAAGAAAATGG
GTATGATAATTTCAACAGGCGCGCCTACGTGTCAAAAACGCAGAAGTTGG
TAACTTTACCCGTCAGCTACCTCCGATGTAGAACATCTGAAGTGTGGAAA
CCGTTACGAATTTTCGCCGAGTTTTTGCTGGGAGTAAAGCAGATCACAAC
TTAG