Gchil7263.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7263.t1
Unique NameGchil7263.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:903440..903870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704658.1
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0071704,GO:0140096,GO:1901564
Evalue8.52e-18
EggNOG OGs2A3SY@1|root,2RY5W@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7263Gchil7263Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 903440..903870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1Gchil7263.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 903440..903870 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1.stop1Gchil7263.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 903440..903442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1.CDS1Gchil7263.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 903440..903467 -
Gchil7263.t1.CDS2Gchil7263.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 903581..903870 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1.exon1Gchil7263.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 903440..903467 -
Gchil7263.t1.exon2Gchil7263.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 903581..903870 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1.intron1Gchil7263.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 903468..903580 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7263.t1.start1Gchil7263.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 903868..903870 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7263.t1 ID=Gchil7263.t1|Name=Gchil7263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MIDQNAIAIVATMITGIGGGIALVAWTENQGKRTEQRENTQPCTECKGET
TTQCNVCNGSTKDPLDESKPCSYCEGVGNIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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spliced messenger RNA

>Gchil7263.t1 ID=Gchil7263.t1|Name=Gchil7263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004441_pilon:903440..903870- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATCAAAATGCAATTGCAATTGTGGCTACAATGATAACAGGTAT
TGGGGGTGGAATTGCCTTGGTGGCCTGGACAGAGAATCAAGGAAAACGCA
CAGAGCAGAGAGAAAACACTCAACCTTGTACAGAGTGCAAAGGCGAGACC
ACTACTCAATGCAACGTCTGCAACGGTTCGACCAAAGATCCATTAGATGA
ATCCAAACCGTGTTCATACTGCGAGGGCGTTGGGAACATAAAATGCTTCA
ATTGTTCTGGCTCGGGGATTCAACCTAGATTTCTGGACAGATTATCACCG
GAAGATTTCATGGACTAG
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protein sequence of Gchil7263.t1

>Gchil7263.t1 ID=Gchil7263.t1|Name=Gchil7263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MIDQNAIAIVATMITGIGGGIALVAWTENQGKRTEQRENTQPCTECKGET
TTQCNVCNGSTKDPLDESKPCSYCEGVGNIKCFNCSGSGIQPRFLDRLSP
EDFMD*
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mRNA from alignment at tig00004441_pilon:903440..903870-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7263.t1 ID=Gchil7263.t1|Name=Gchil7263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp|location=Sequence derived from alignment at tig00004441_pilon:903440..903870- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATCAAAATGCAATTGCAATTGTGGCTACAATGATAACAGGTAT
TGGGGGTGGAATTGCCTTGGTGGCCTGGACAGAGAATCAAGGAAAACGCA
CAGAGCAGAGAGAAAACACTCAACCTTGTACAGAGTGCAAAGGCGAGACC
ACTACTCAATGCAACGTCTGCAACGGTTCGACCAAAGATCCATTAGATGA
ATCCAAACCGTGTTCATACTGCGAGGGCGTTGGGAACATAAAATGCTTCA
ATTGTTCTGGCTCGGGGATTCAACCTAGATTTCTGGACAGGTGCGTTGCG
CTGTACATTCTCATACAAACTCTAGTCAACAACTTACAGTACAATTGGAG
GCAAACTAAACTAACTTAACATCCGCACGTATCTTTTATGCTTATGCACC
CAGATTATCACCGGAAGATTTCATGGACTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:903440..903870-

>Gchil7263.t1 ID=Gchil7263.t1|Name=Gchil7263.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004441_pilon:903440..903870- (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATCAAAATGCAATTGCAATTGTGGCTACAATGATAACAGGTAT
TGGGGGTGGAATTGCCTTGGTGGCCTGGACAGAGAATCAAGGAAAACGCA
CAGAGCAGAGAGAAAACACTCAACCTTGTACAGAGTGCAAAGGCGAGACC
ACTACTCAATGCAACGTCTGCAACGGTTCGACCAAAGATCCATTAGATGA
ATCCAAACCGTGTTCATACTGCGAGGGCGTTGGGAACATAAAATGCTTCA
ATTGTTCTGGCTCGGGGATTCAACCTAGATTTCTGGACAGATTATCACCG
GAAGATTTCATGGACTAG
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