Gchil7254.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7254.t1
Unique Name	Gchil7254.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:874899..876770 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	91464.S7335_4588
Preferred name	thiG
PFAMs	DAO,ThiG
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC03096,RC03097,RC03461
KEGG ko	ko:K03149
KEGG Reaction	R10247
KEGG Pathway	ko00730,ko01100,map00730,map01100
Evalue	3.43e-66
EggNOG OGs	COG0665@1\|root,COG2022@1\|root,COG0665@2\|Bacteria,COG2022@2\|Bacteria,1FZYU@1117\|Cyanobacteria,1GYHY@1129\|Synechococcus
EC	2.8.1.10
Description	Catalyzes the rearrangement of 1-deoxy-D-xylulose 5- phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7254	Gchil7254	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 874899..876770 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7254.t1.start1	Gchil7254.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 874899..874901 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7254.t1.CDS1	Gchil7254.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 874899..876770 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7254.t1.exon1	Gchil7254.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 874899..876770 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7254.t1.stop1	Gchil7254.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 876768..876770 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7254.t1	Gchil7254.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 874899..876770 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:874899..876770+
coding sequence from alignment at tig00004441_pilon:874899..876770+

mRNA sequence

>Gchil7254.t1 ID=Gchil7254.t1|Name=Gchil7254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp
MTAFCPPPHSLFLRLAAPAFPATPALRTRAPPHAAAASPSADVVIVGAGV
AGLSTAFELAQRGAAVRVITAPQRPPAGLAAAGMLAPSVERLSDPLRRLA
DQSLSLYPDFVDKLQAVSGHHVHYLSRSDFLVPFFEHVSGGDLIHGDAVR
LIEPALSPQVVAVRRHPRDASVDNRRLLRALRVACEKLGVTFVEQRVRAI
IASHQSTHVAALESDSGTRIHAAHFIIAAGAWTRNLLPMVPIHPVKGQMM
SLVPPVSSKPLLNHVLHGSKVYIVPKNDSTEFYVGATVEHCGFDARNTPA
GLKRLIDAAIELVPDMAHYEIHEMWTGFRPGTPDASPIFGLCTFDNLSVA
TGFHRNGILLAPIGAKIAAAYAQGQTADLPPDLRHLLDNFTLDRFYGNAT
KLAHATLSKNQPSEVATFNINPVTGASDSPKIAEPKNSKDIKLWKLRPDG
TSEPVYPPGWEGPMNISPRDLAELIATSEAQVTHTQPAPAPSQLKEASIS
LQSTDSSTPDSRSAVNDAYDDILSKRGPDMRESMSKSLAENRAFGRQPCS
LQRKDGPVLSLTEEDVKRCDAAAEMGYRDMQELEKYFDANHESVIATRTE
AEETDTEEINPSIRIGGIELHLQ*

spliced messenger RNA

>Gchil7254.t1 ID=Gchil7254.t1|Name=Gchil7254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00004441_pilon:874899..876770+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGTTTTGCCCCCCGCCTCACTCGCTCTTCTTGCGGCTGGCGGC
GCCCGCATTCCccgcaacccccgcgctccgcacacgcgcgccgccgcacg
ccgccgccgccAGTCCCAGCGCTGACGTCGTCATCGTCGGTGCCGGTGTT
GCCGGCCTTTCCACCGCCTTTGAGCTCGCGCAGCGTGGCGCCGCCGTGCG
GGTCATCACAGCGCCGCAGCGGCCGCCGGCCGGGCTTGCGGCCGCCGGCA
TGTTGGCGCCCTCCGTAGAAAGGCTCAGCGATCCGCTTCGCCGTCTGGCC
GACCAGTCGCTGTCCCTCTACCCGGACTTCGTCGACAAATTACAGGCTGT
GTCGGGCCATCACGTGCACTACCTGTCGCGTTCGGACTTTCTTGTTCCGT
TTTTTGAGCACGTGTCGGGTGGTGATCTCATACATGGCGATGCTGTTCGT
CTCATCGAACCAGCGCTCAGCCCTCAAGTGGTGGCTGTCCGACGTCACCC
TCGCGACGCCAGCGTGGACAATCGCCGTTTGCTGCGCGCCTTGCGTGTCG
CATGTGAGAAGCTCGGTGTCACCTTCGTTGAGCAGCGCGTCCGCGCCATT
ATCGCTTCCCATCAGTCGACGCATGTAGCAGCCCTCGAATCTGACAGTGG
CACACGCATCCACGCAGCCCATTTCATAATTGCCGCGGGTGCGTGGACCC
GCAACTTGTTACCCATGGTGCCAATACACCCTGTCAAGGGGCAGATGATG
TCACTCGTTCCCCCTGTATCGTCGAAACCTCTCTTGAATCATGTGCTCCA
CGGCTCAAAAGTCTATATCGTTCCGAAGAATGACTCCACCGAGTTTTACG
TAGGTGCAACCGTCGAGCACTGCGGATTCGATGCTCGGAACACCCCAGCC
GGCTTGAAACGCTTGATTGACGCCGCCATCGAGCTCGTGCCAGATATGGC
TCACTATGAGATTCATGAAATGTGGACTGGCTTTCGCCCAGGCACACCTG
ATGCGTCCCCAATTTTTGGACTGTGTACTTTTGACAACCTCAGCGTCGCC
ACTGGGTTTCATAGAAACGGTATTCTTCTCGCACCGATTGGAGCCAAGAT
TGCTGCTGCTTACGCTCAGGGTCAAACTGCCGATTTGCCCCCTGACCTTC
GTCACTTACTAGACAATTTCACCCTCGATCGCTTTTATGGCAACGCTACT
AAACTTGCGCACGCCACTTTATCCAAAAATCAACCGTCAGAAGTAGCCAC
TTTCAATATTAATCCCGTAACTGGCGCTTCAGATTCACCGAAGATAGCGG
AGCCGAAAAATAGCAAAGATATCAAGCTTTGGAAGCTGCGTCCAGACGGA
ACCAGTGAGCCCGTATATCCACCTGGGTGGGAGGGCCCGATGAACATATC
GCCCCGCGATTTAGCAGAGCTTATCGCTACCTCTGAAGCACAAGTAACAC
ACACACAACCAGCACCAGCTCCGAGTCAACTTAAGGAAGCAAGCATATCG
TTACAGTCAACCGACTCTTCAACCCCTGACTCCAGAAGCGCTGTAAATGA
TGCATACGACGATATTTTGTCTAAACGGGGGCCCGATATGCGCGAATCCA
TGTCAAAATCTCTAGCCGAGAACAGAGCTTTTGGACGACAACCGTGCTCG
CTACAAAGAAAAGACGGGCCAGTTCTGTCGCTTACTGAGGAGGATGTGAA
AAGATGCGACGCCGCGGCGGAAATGGGGTATCGTGACATGCAAGAATTGG
AGAAATATTTTGATGCGAACCATGAGAGTGTGATAGCTACAAGAACAGAA
GCCGAAGAGACAGATACAGAAGAAATCAACCCGAGTATTAGAATCGGTGG
CATTGAGTTACACCTCCAATGA

protein sequence of Gchil7254.t1

>Gchil7254.t1 ID=Gchil7254.t1|Name=Gchil7254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=624bp
MTAFCPPPHSLFLRLAAPAFPATPALRTRAPPHAAAASPSADVVIVGAGV
AGLSTAFELAQRGAAVRVITAPQRPPAGLAAAGMLAPSVERLSDPLRRLA
DQSLSLYPDFVDKLQAVSGHHVHYLSRSDFLVPFFEHVSGGDLIHGDAVR
LIEPALSPQVVAVRRHPRDASVDNRRLLRALRVACEKLGVTFVEQRVRAI
IASHQSTHVAALESDSGTRIHAAHFIIAAGAWTRNLLPMVPIHPVKGQMM
SLVPPVSSKPLLNHVLHGSKVYIVPKNDSTEFYVGATVEHCGFDARNTPA
GLKRLIDAAIELVPDMAHYEIHEMWTGFRPGTPDASPIFGLCTFDNLSVA
TGFHRNGILLAPIGAKIAAAYAQGQTADLPPDLRHLLDNFTLDRFYGNAT
KLAHATLSKNQPSEVATFNINPVTGASDSPKIAEPKNSKDIKLWKLRPDG
TSEPVYPPGWEGPMNISPRDLAELIATSEAQVTHTQPAPAPSQLKEASIS
LQSTDSSTPDSRSAVNDAYDDILSKRGPDMRESMSKSLAENRAFGRQPCS
LQRKDGPVLSLTEEDVKRCDAAAEMGYRDMQELEKYFDANHESVIATRTE
AEETDTEEINPSIRIGGIELHLQ*

mRNA from alignment at tig00004441_pilon:874899..876770+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7254.t1 ID=Gchil7254.t1|Name=Gchil7254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00004441_pilon:874899..876770+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTTTTGCCCCCCGCCTCACTCGCTCTTCTTGCGGCTGGCGGC
GCCCGCATTCCccgcaacccccgcgctccgcacacgcgcgccgccgcacg
ccgccgccgccAGTCCCAGCGCTGACGTCGTCATCGTCGGTGCCGGTGTT
GCCGGCCTTTCCACCGCCTTTGAGCTCGCGCAGCGTGGCGCCGCCGTGCG
GGTCATCACAGCGCCGCAGCGGCCGCCGGCCGGGCTTGCGGCCGCCGGCA
TGTTGGCGCCCTCCGTAGAAAGGCTCAGCGATCCGCTTCGCCGTCTGGCC
GACCAGTCGCTGTCCCTCTACCCGGACTTCGTCGACAAATTACAGGCTGT
GTCGGGCCATCACGTGCACTACCTGTCGCGTTCGGACTTTCTTGTTCCGT
TTTTTGAGCACGTGTCGGGTGGTGATCTCATACATGGCGATGCTGTTCGT
CTCATCGAACCAGCGCTCAGCCCTCAAGTGGTGGCTGTCCGACGTCACCC
TCGCGACGCCAGCGTGGACAATCGCCGTTTGCTGCGCGCCTTGCGTGTCG
CATGTGAGAAGCTCGGTGTCACCTTCGTTGAGCAGCGCGTCCGCGCCATT
ATCGCTTCCCATCAGTCGACGCATGTAGCAGCCCTCGAATCTGACAGTGG
CACACGCATCCACGCAGCCCATTTCATAATTGCCGCGGGTGCGTGGACCC
GCAACTTGTTACCCATGGTGCCAATACACCCTGTCAAGGGGCAGATGATG
TCACTCGTTCCCCCTGTATCGTCGAAACCTCTCTTGAATCATGTGCTCCA
CGGCTCAAAAGTCTATATCGTTCCGAAGAATGACTCCACCGAGTTTTACG
TAGGTGCAACCGTCGAGCACTGCGGATTCGATGCTCGGAACACCCCAGCC
GGCTTGAAACGCTTGATTGACGCCGCCATCGAGCTCGTGCCAGATATGGC
TCACTATGAGATTCATGAAATGTGGACTGGCTTTCGCCCAGGCACACCTG
ATGCGTCCCCAATTTTTGGACTGTGTACTTTTGACAACCTCAGCGTCGCC
ACTGGGTTTCATAGAAACGGTATTCTTCTCGCACCGATTGGAGCCAAGAT
TGCTGCTGCTTACGCTCAGGGTCAAACTGCCGATTTGCCCCCTGACCTTC
GTCACTTACTAGACAATTTCACCCTCGATCGCTTTTATGGCAACGCTACT
AAACTTGCGCACGCCACTTTATCCAAAAATCAACCGTCAGAAGTAGCCAC
TTTCAATATTAATCCCGTAACTGGCGCTTCAGATTCACCGAAGATAGCGG
AGCCGAAAAATAGCAAAGATATCAAGCTTTGGAAGCTGCGTCCAGACGGA
ACCAGTGAGCCCGTATATCCACCTGGGTGGGAGGGCCCGATGAACATATC
GCCCCGCGATTTAGCAGAGCTTATCGCTACCTCTGAAGCACAAGTAACAC
ACACACAACCAGCACCAGCTCCGAGTCAACTTAAGGAAGCAAGCATATCG
TTACAGTCAACCGACTCTTCAACCCCTGACTCCAGAAGCGCTGTAAATGA
TGCATACGACGATATTTTGTCTAAACGGGGGCCCGATATGCGCGAATCCA
TGTCAAAATCTCTAGCCGAGAACAGAGCTTTTGGACGACAACCGTGCTCG
CTACAAAGAAAAGACGGGCCAGTTCTGTCGCTTACTGAGGAGGATGTGAA
AAGATGCGACGCCGCGGCGGAAATGGGGTATCGTGACATGCAAGAATTGG
AGAAATATTTTGATGCGAACCATGAGAGTGTGATAGCTACAAGAACAGAA
GCCGAAGAGACAGATACAGAAGAAATCAACCCGAGTATTAGAATCGGTGG
CATTGAGTTACACCTCCAATGA

Coding sequence (CDS) from alignment at tig00004441_pilon:874899..876770+

>Gchil7254.t1 ID=Gchil7254.t1|Name=Gchil7254.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00004441_pilon:874899..876770+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCGTTTTGCCCCCCGCCTCACTCGCTCTTCTTGCGGCTGGCGGC
GCCCGCATTCCccgcaacccccgcgctccgcacacgcgcgccgccgcacg
ccgccgccgccAGTCCCAGCGCTGACGTCGTCATCGTCGGTGCCGGTGTT
GCCGGCCTTTCCACCGCCTTTGAGCTCGCGCAGCGTGGCGCCGCCGTGCG
GGTCATCACAGCGCCGCAGCGGCCGCCGGCCGGGCTTGCGGCCGCCGGCA
TGTTGGCGCCCTCCGTAGAAAGGCTCAGCGATCCGCTTCGCCGTCTGGCC
GACCAGTCGCTGTCCCTCTACCCGGACTTCGTCGACAAATTACAGGCTGT
GTCGGGCCATCACGTGCACTACCTGTCGCGTTCGGACTTTCTTGTTCCGT
TTTTTGAGCACGTGTCGGGTGGTGATCTCATACATGGCGATGCTGTTCGT
CTCATCGAACCAGCGCTCAGCCCTCAAGTGGTGGCTGTCCGACGTCACCC
TCGCGACGCCAGCGTGGACAATCGCCGTTTGCTGCGCGCCTTGCGTGTCG
CATGTGAGAAGCTCGGTGTCACCTTCGTTGAGCAGCGCGTCCGCGCCATT
ATCGCTTCCCATCAGTCGACGCATGTAGCAGCCCTCGAATCTGACAGTGG
CACACGCATCCACGCAGCCCATTTCATAATTGCCGCGGGTGCGTGGACCC
GCAACTTGTTACCCATGGTGCCAATACACCCTGTCAAGGGGCAGATGATG
TCACTCGTTCCCCCTGTATCGTCGAAACCTCTCTTGAATCATGTGCTCCA
CGGCTCAAAAGTCTATATCGTTCCGAAGAATGACTCCACCGAGTTTTACG
TAGGTGCAACCGTCGAGCACTGCGGATTCGATGCTCGGAACACCCCAGCC
GGCTTGAAACGCTTGATTGACGCCGCCATCGAGCTCGTGCCAGATATGGC
TCACTATGAGATTCATGAAATGTGGACTGGCTTTCGCCCAGGCACACCTG
ATGCGTCCCCAATTTTTGGACTGTGTACTTTTGACAACCTCAGCGTCGCC
ACTGGGTTTCATAGAAACGGTATTCTTCTCGCACCGATTGGAGCCAAGAT
TGCTGCTGCTTACGCTCAGGGTCAAACTGCCGATTTGCCCCCTGACCTTC
GTCACTTACTAGACAATTTCACCCTCGATCGCTTTTATGGCAACGCTACT
AAACTTGCGCACGCCACTTTATCCAAAAATCAACCGTCAGAAGTAGCCAC
TTTCAATATTAATCCCGTAACTGGCGCTTCAGATTCACCGAAGATAGCGG
AGCCGAAAAATAGCAAAGATATCAAGCTTTGGAAGCTGCGTCCAGACGGA
ACCAGTGAGCCCGTATATCCACCTGGGTGGGAGGGCCCGATGAACATATC
GCCCCGCGATTTAGCAGAGCTTATCGCTACCTCTGAAGCACAAGTAACAC
ACACACAACCAGCACCAGCTCCGAGTCAACTTAAGGAAGCAAGCATATCG
TTACAGTCAACCGACTCTTCAACCCCTGACTCCAGAAGCGCTGTAAATGA
TGCATACGACGATATTTTGTCTAAACGGGGGCCCGATATGCGCGAATCCA
TGTCAAAATCTCTAGCCGAGAACAGAGCTTTTGGACGACAACCGTGCTCG
CTACAAAGAAAAGACGGGCCAGTTCTGTCGCTTACTGAGGAGGATGTGAA
AAGATGCGACGCCGCGGCGGAAATGGGGTATCGTGACATGCAAGAATTGG
AGAAATATTTTGATGCGAACCATGAGAGTGTGATAGCTACAAGAACAGAA
GCCGAAGAGACAGATACAGAAGAAATCAACCCGAGTATTAGAATCGGTGG
CATTGAGTTACACCTCCAATGA