Gchil7242.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7242.t1
Unique NameGchil7242.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:844786..846041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707687.1
Preferred nameDRG1
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K02156,ko:K06944
KEGG Pathwayko04320,map04320
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006351,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0010646,GO:0010647,GO:0016070,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019003,GO:0019438,GO:0019538,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042802,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833,GO:1990904
Evalue1.36e-175
EggNOG OGsCOG1163@1|root,KOG1487@2759|Eukaryota
DescriptionGTP-binding protein
COG categoryZ
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7242Gchil7242Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 844786..846041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1Gchil7242.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 844786..846041 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1.start1Gchil7242.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 844786..844788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1.CDS1Gchil7242.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 844786..845456 +
Gchil7242.t1.CDS2Gchil7242.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 845600..846041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1.exon1Gchil7242.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 844786..845456 +
Gchil7242.t1.exon2Gchil7242.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 845600..846041 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1.intron1Gchil7242.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 845457..845599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7242.t1.stop1Gchil7242.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 846039..846041 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7242.t1 ID=Gchil7242.t1|Name=Gchil7242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp
MASTIAKIEEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGGEGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQHSVAAAYEFTTLT
CIPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLD
ASKPASHKRIIEKELEGFGIRLNKKPPPLIYRRKDRGGISFSSAVQTELN
LETIKSVCAEYRIHNADFIVRGECSIDDIIDVIEGNRRYVPALYVVNMID
KISMEELELYHRMDRYVPISGGLQWNIDGLLEAIWEDLKLVRIYTKPKGV
TVVDFAEPVILKKDERERTVSAFCRRIHKTLENELKFALVWGKSTKFNPQ
KCGKEHVLWDEDVIQLVKQT*
back to top

spliced messenger RNA

>Gchil7242.t1 ID=Gchil7242.t1|Name=Gchil7242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00004441_pilon:844786..846041+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCACAATCGCAAAGATTGAGGAGATTGAGGCCGAAATGGCACG
CACGCAGAAAAACAAGGCCACGTCGCAACACCTCGGCATTCTCAAGGCTA
AGCTCGCCAAGCTTCGTCGCGAGCTAATCGCCCCGCCCAAAGGCGGTGGC
GGCGGCGGTGGAGAGGGCTTTGAGGTCCCCAAGACCGGTGACGCACGTGT
CGGTCTCATCGGATTCCCCTCTGTTGGGAAATCATCCTTGCTTACGCTTC
TCACCGGTCAACACAGCGTCGCTGCCGCCTACGAGTTTACCACCCTCACA
TGCATCCCTGGAATGTTGTACTACAACGGCGCCAAGATTCAACTCTTGGA
CCTTCCGGGTATCATTGAGGGCGCCAAGGATGGCAAGGGTCGCGGCCGTC
AAGTCATTGCTGTCGCTCGCTCATGTGATCTTATTCTCATCGTGTTGGAC
GCCTCAAAGCCGGCCAGCCACAAGCGCATTATCGAAAAGGAGCTTGAGGG
TTTTGGAATTCGCCTCAACAAAAAACCCCCGCCTCTCATTTACAGGCGGA
AAGACCGGGGTGGCATTTCGTTTTCTTCCGCTGTCCAGACGGAGCTTAAC
CTTGAAACCATCAAGAGTGTTTGTGCCGAGTACAGAATTCACAACGCGGA
CTTCATTGTCCGCGGAGAATGCTCCATTGATGATATCATTGACGTCATCG
AGGGAAATAGAAGGTATGTACCCGCCTTATACGTCGTCAACATGATCGAC
AAGATCAGCATGGAAGAACTTGAGCTCTACCATCGAATGGATCGATATGT
GCCAATCAGCGGTGGATTGCAGTGGAACATCGACGGTTTGTTGGAGGCCA
TTTGGGAAGACCTCAAGCTCGTTCGTATCTATACGAAGCCGAAAGGCGTC
ACGGTTGTGGACTTTGCCGAACCAGTCATCCTCAAGAAGGATGAACGGGA
GCGTACTGTGTCTGCGTTTTGCCGTCGAATCCACAAGACGCTTGAAAACG
AACTAAAGTTTGCTTTGGTATGGGGCAAAAGTACAAAGTTCAACCCGCAA
AAATGCGGAAAGGAGCATGTGCTGTGGGACGAAGACGTGATTCAACTTGT
GAAACAAACTTAA
back to top

protein sequence of Gchil7242.t1

>Gchil7242.t1 ID=Gchil7242.t1|Name=Gchil7242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=371bp
MASTIAKIEEIEAEMARTQKNKATSQHLGILKAKLAKLRRELIAPPKGGG
GGGGEGFEVPKTGDARVGLIGFPSVGKSSLLTLLTGQHSVAAAYEFTTLT
CIPGMLYYNGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARSCDLILIVLD
ASKPASHKRIIEKELEGFGIRLNKKPPPLIYRRKDRGGISFSSAVQTELN
LETIKSVCAEYRIHNADFIVRGECSIDDIIDVIEGNRRYVPALYVVNMID
KISMEELELYHRMDRYVPISGGLQWNIDGLLEAIWEDLKLVRIYTKPKGV
TVVDFAEPVILKKDERERTVSAFCRRIHKTLENELKFALVWGKSTKFNPQ
KCGKEHVLWDEDVIQLVKQT*
back to top

mRNA from alignment at tig00004441_pilon:844786..846041+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7242.t1 ID=Gchil7242.t1|Name=Gchil7242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1256bp|location=Sequence derived from alignment at tig00004441_pilon:844786..846041+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCACAATCGCAAAGATTGAGGAGATTGAGGCCGAAATGGCACG
CACGCAGAAAAACAAGGCCACGTCGCAACACCTCGGCATTCTCAAGGCTA
AGCTCGCCAAGCTTCGTCGCGAGCTAATCGCCCCGCCCAAAGGCGGTGGC
GGCGGCGGTGGAGAGGGCTTTGAGGTCCCCAAGACCGGTGACGCACGTGT
CGGTCTCATCGGATTCCCCTCTGTTGGGAAATCATCCTTGCTTACGCTTC
TCACCGGTCAACACAGCGTCGCTGCCGCCTACGAGTTTACCACCCTCACA
TGCATCCCTGGAATGTTGTACTACAACGGCGCCAAGATTCAACTCTTGGA
CCTTCCGGGTATCATTGAGGGCGCCAAGGATGGCAAGGGTCGCGGCCGTC
AAGTCATTGCTGTCGCTCGCTCATGTGATCTTATTCTCATCGTGTTGGAC
GCCTCAAAGCCGGCCAGCCACAAGCGCATTATCGAAAAGGAGCTTGAGGG
TTTTGGAATTCGCCTCAACAAAAAACCCCCGCCTCTCATTTACAGGCGGA
AAGACCGGGGTGGCATTTCGTTTTCTTCCGCTGTCCAGACGGAGCTTAAC
CTTGAAACCATCAAGAGTGTTTGTGCCGAGTACAGAATTCACAACGCGGA
CTTCATTGTCCGCGGAGAATGGTAAGTCTTCTTTTGTAGCTTGTTGCCTC
TCGCCTGCGACGAGCCTTGTCATATGCATTGCGACTCGACACGTCACGTC
ACATTCCGCAACCGCTTATGTGCTAACTGAATTTCCCTGTTGGAGGACTG
CTTCACTAAAATAGCTCCATTGATGATATCATTGACGTCATCGAGGGAAA
TAGAAGGTATGTACCCGCCTTATACGTCGTCAACATGATCGACAAGATCA
GCATGGAAGAACTTGAGCTCTACCATCGAATGGATCGATATGTGCCAATC
AGCGGTGGATTGCAGTGGAACATCGACGGTTTGTTGGAGGCCATTTGGGA
AGACCTCAAGCTCGTTCGTATCTATACGAAGCCGAAAGGCGTCACGGTTG
TGGACTTTGCCGAACCAGTCATCCTCAAGAAGGATGAACGGGAGCGTACT
GTGTCTGCGTTTTGCCGTCGAATCCACAAGACGCTTGAAAACGAACTAAA
GTTTGCTTTGGTATGGGGCAAAAGTACAAAGTTCAACCCGCAAAAATGCG
GAAAGGAGCATGTGCTGTGGGACGAAGACGTGATTCAACTTGTGAAACAA
ACTTAA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:844786..846041+

>Gchil7242.t1 ID=Gchil7242.t1|Name=Gchil7242.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00004441_pilon:844786..846041+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTCCACAATCGCAAAGATTGAGGAGATTGAGGCCGAAATGGCACG
CACGCAGAAAAACAAGGCCACGTCGCAACACCTCGGCATTCTCAAGGCTA
AGCTCGCCAAGCTTCGTCGCGAGCTAATCGCCCCGCCCAAAGGCGGTGGC
GGCGGCGGTGGAGAGGGCTTTGAGGTCCCCAAGACCGGTGACGCACGTGT
CGGTCTCATCGGATTCCCCTCTGTTGGGAAATCATCCTTGCTTACGCTTC
TCACCGGTCAACACAGCGTCGCTGCCGCCTACGAGTTTACCACCCTCACA
TGCATCCCTGGAATGTTGTACTACAACGGCGCCAAGATTCAACTCTTGGA
CCTTCCGGGTATCATTGAGGGCGCCAAGGATGGCAAGGGTCGCGGCCGTC
AAGTCATTGCTGTCGCTCGCTCATGTGATCTTATTCTCATCGTGTTGGAC
GCCTCAAAGCCGGCCAGCCACAAGCGCATTATCGAAAAGGAGCTTGAGGG
TTTTGGAATTCGCCTCAACAAAAAACCCCCGCCTCTCATTTACAGGCGGA
AAGACCGGGGTGGCATTTCGTTTTCTTCCGCTGTCCAGACGGAGCTTAAC
CTTGAAACCATCAAGAGTGTTTGTGCCGAGTACAGAATTCACAACGCGGA
CTTCATTGTCCGCGGAGAATGCTCCATTGATGATATCATTGACGTCATCG
AGGGAAATAGAAGGTATGTACCCGCCTTATACGTCGTCAACATGATCGAC
AAGATCAGCATGGAAGAACTTGAGCTCTACCATCGAATGGATCGATATGT
GCCAATCAGCGGTGGATTGCAGTGGAACATCGACGGTTTGTTGGAGGCCA
TTTGGGAAGACCTCAAGCTCGTTCGTATCTATACGAAGCCGAAAGGCGTC
ACGGTTGTGGACTTTGCCGAACCAGTCATCCTCAAGAAGGATGAACGGGA
GCGTACTGTGTCTGCGTTTTGCCGTCGAATCCACAAGACGCTTGAAAACG
AACTAAAGTTTGCTTTGGTATGGGGCAAAAGTACAAAGTTCAACCCGCAA
AAATGCGGAAAGGAGCATGTGCTGTGGGACGAAGACGTGATTCAACTTGT
GAAACAAACTTAA
back to top