Gchil7239.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7239.t1
Unique NameGchil7239.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:821911..823146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704927.1
PFAMsAldo_ket_red
Max annot lvl2759|Eukaryota
KEGG koko:K09338
Evalue3.42e-116
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota
Descriptionoxidoreductase activity
COG categoryC
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7239Gchil7239Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 821911..823146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7239.t1.start1Gchil7239.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 821911..821913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7239.t1.CDS1Gchil7239.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 821911..823146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7239.t1.exon1Gchil7239.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 821911..823146 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7239.t1.stop1Gchil7239.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 823144..823146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7239.t1Gchil7239.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 821911..823146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7239.t1 ID=Gchil7239.t1|Name=Gchil7239.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MPKFLLLAFASPSNVALRRKPRPTTSGAMSSTCARRPVRMVGDTKAKAPL
SEQKLALHPVGNAGLVMTELTLGTMTWGHQNSEQDAHEQLDYAFERGVVG
IDGAELYPVPPQQETYGGTERAIGSWIKKRGGGSFREKLVIFSKVAGGSF
GERTLSWIRGEDRKVDRKNIRAAVQGILQRLGTDYIDLLQIHWPDRYVPL
FGAGVYDPARALDSVPFEQQVAAMDELIREGLIRNYGLSNETAWGVAQFD
AKARANGMARPVSIQNSYSLIYRDFEGHLAEACAERNANLSLLAYSPLAG
GALSGKYLDPPIPRDARFALYPGYMKRFQSSIAAEAIREYKRVADDAGLS
LTELSLGWCKSRWFVASTIIGATNISQLKQNLDTFSVELDDSVIEAVEKV
YVRYRDPSKTS*
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spliced messenger RNA

>Gchil7239.t1 ID=Gchil7239.t1|Name=Gchil7239.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004441_pilon:821911..823146+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGTTTCTGCTCCTAGCGTTTGCGAGCCCATCCAATGTCGCGCT
TCGCCGCAAACCGCGCCCCACGACATCGGGCGCAATGTCATCCACCTGCG
CGAGGAGACCAGTAAGAATGGTGGGCGACACGAAGGCGAAAGCGCCGCTC
AGCGAGCAGAAGCTCGCACTCCACCCGGTTGGAAACGCCGGACTAGTCAT
GACGGAGCTGACGCTTGGCACAATGACCTGGGGCCATCAAAACAGCGAGC
AAGATGCGCACGAGCAGCTCGACTACGCATTCGAAAGGGGAGTGGTGGGC
ATTGACGGCGCAGAGCTTTACCCTGTTCCACCGCAACAGGAAACATACGG
AGGAACGGAGCGGGCAATCGGCTCTTGGATCAAGAAACGCGGCGGTGGCT
CCTTTCGGGAGAAGCTCGTGATCTTCTCCAAGGTGGCCGGCGGCAGTTTT
GGGGAGAGGACGCTTTCGTGGATCCGTGGCGAAGACCGGAAGGTGGACAG
GAAGAACATTAGAGCTGCTGTGCAAGGCATTCTGCAGCGGCTTGGGACCG
ACTACATTGACCTTTTACAAATCCACTGGCCCGATCGTTATGTACCGCTG
TTCGGCGCGGGCGTATACGACCCTGCAAGAGCGCTGGATTCGGTGCCGTT
CGAGCAGCAGGTTGCCGCCATGGACGAACTGATCCGGGAGGGCTTGATAC
GAAATTACGGGCTAAGCAACGAGACGGCGTGGGGCGTAGCGCAATTCGAC
GCCAAGGCTAGGGCAAACGGAATGGCTCGCCCTGTATCCATCCAGAACTC
TTACAGCCTGATTTACCGCGATTTCGAAGGGCACCTGGCGGAGGCATGCG
CTGAGAGAAACGCGAACTTGAGCCTTCTCGCATACAGCCCACTAGCAGGC
GGGGCGCTGAGCGGCAAATATCTGGATCCGCCTATTCCTCGCGACGCGCG
GTTTGCGCTATACCCGGGATACATGAAGCGCTTCCAGAGCAGCATAGCGG
CAGAGGCGATCAGAGAGTACAAGCGGGTGGCGGACGATGCCGGGTTGAGC
TTGACGGAGTTGTCGCTCGGCTGGTGCAAGAGCAGGTGGTTTGTTGCCAG
TACGATCATCGGGGCGACCAACATAAGCCAGCTGAAGCAGAACTTGGATA
CGTTCTCCGTTGAGCTTGACGACTCGGTGATTGAGGCAGTAGAAAAAGTG
TACGTGCGCTATCGCGACCCTTCCAAGACGTCGTGA
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protein sequence of Gchil7239.t1

>Gchil7239.t1 ID=Gchil7239.t1|Name=Gchil7239.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MPKFLLLAFASPSNVALRRKPRPTTSGAMSSTCARRPVRMVGDTKAKAPL
SEQKLALHPVGNAGLVMTELTLGTMTWGHQNSEQDAHEQLDYAFERGVVG
IDGAELYPVPPQQETYGGTERAIGSWIKKRGGGSFREKLVIFSKVAGGSF
GERTLSWIRGEDRKVDRKNIRAAVQGILQRLGTDYIDLLQIHWPDRYVPL
FGAGVYDPARALDSVPFEQQVAAMDELIREGLIRNYGLSNETAWGVAQFD
AKARANGMARPVSIQNSYSLIYRDFEGHLAEACAERNANLSLLAYSPLAG
GALSGKYLDPPIPRDARFALYPGYMKRFQSSIAAEAIREYKRVADDAGLS
LTELSLGWCKSRWFVASTIIGATNISQLKQNLDTFSVELDDSVIEAVEKV
YVRYRDPSKTS*
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mRNA from alignment at tig00004441_pilon:821911..823146+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7239.t1 ID=Gchil7239.t1|Name=Gchil7239.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004441_pilon:821911..823146+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAAGTTTCTGCTCCTAGCGTTTGCGAGCCCATCCAATGTCGCGCT
TCGCCGCAAACCGCGCCCCACGACATCGGGCGCAATGTCATCCACCTGCG
CGAGGAGACCAGTAAGAATGGTGGGCGACACGAAGGCGAAAGCGCCGCTC
AGCGAGCAGAAGCTCGCACTCCACCCGGTTGGAAACGCCGGACTAGTCAT
GACGGAGCTGACGCTTGGCACAATGACCTGGGGCCATCAAAACAGCGAGC
AAGATGCGCACGAGCAGCTCGACTACGCATTCGAAAGGGGAGTGGTGGGC
ATTGACGGCGCAGAGCTTTACCCTGTTCCACCGCAACAGGAAACATACGG
AGGAACGGAGCGGGCAATCGGCTCTTGGATCAAGAAACGCGGCGGTGGCT
CCTTTCGGGAGAAGCTCGTGATCTTCTCCAAGGTGGCCGGCGGCAGTTTT
GGGGAGAGGACGCTTTCGTGGATCCGTGGCGAAGACCGGAAGGTGGACAG
GAAGAACATTAGAGCTGCTGTGCAAGGCATTCTGCAGCGGCTTGGGACCG
ACTACATTGACCTTTTACAAATCCACTGGCCCGATCGTTATGTACCGCTG
TTCGGCGCGGGCGTATACGACCCTGCAAGAGCGCTGGATTCGGTGCCGTT
CGAGCAGCAGGTTGCCGCCATGGACGAACTGATCCGGGAGGGCTTGATAC
GAAATTACGGGCTAAGCAACGAGACGGCGTGGGGCGTAGCGCAATTCGAC
GCCAAGGCTAGGGCAAACGGAATGGCTCGCCCTGTATCCATCCAGAACTC
TTACAGCCTGATTTACCGCGATTTCGAAGGGCACCTGGCGGAGGCATGCG
CTGAGAGAAACGCGAACTTGAGCCTTCTCGCATACAGCCCACTAGCAGGC
GGGGCGCTGAGCGGCAAATATCTGGATCCGCCTATTCCTCGCGACGCGCG
GTTTGCGCTATACCCGGGATACATGAAGCGCTTCCAGAGCAGCATAGCGG
CAGAGGCGATCAGAGAGTACAAGCGGGTGGCGGACGATGCCGGGTTGAGC
TTGACGGAGTTGTCGCTCGGCTGGTGCAAGAGCAGGTGGTTTGTTGCCAG
TACGATCATCGGGGCGACCAACATAAGCCAGCTGAAGCAGAACTTGGATA
CGTTCTCCGTTGAGCTTGACGACTCGGTGATTGAGGCAGTAGAAAAAGTG
TACGTGCGCTATCGCGACCCTTCCAAGACGTCGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:821911..823146+

>Gchil7239.t1 ID=Gchil7239.t1|Name=Gchil7239.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00004441_pilon:821911..823146+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCAAGTTTCTGCTCCTAGCGTTTGCGAGCCCATCCAATGTCGCGCT
TCGCCGCAAACCGCGCCCCACGACATCGGGCGCAATGTCATCCACCTGCG
CGAGGAGACCAGTAAGAATGGTGGGCGACACGAAGGCGAAAGCGCCGCTC
AGCGAGCAGAAGCTCGCACTCCACCCGGTTGGAAACGCCGGACTAGTCAT
GACGGAGCTGACGCTTGGCACAATGACCTGGGGCCATCAAAACAGCGAGC
AAGATGCGCACGAGCAGCTCGACTACGCATTCGAAAGGGGAGTGGTGGGC
ATTGACGGCGCAGAGCTTTACCCTGTTCCACCGCAACAGGAAACATACGG
AGGAACGGAGCGGGCAATCGGCTCTTGGATCAAGAAACGCGGCGGTGGCT
CCTTTCGGGAGAAGCTCGTGATCTTCTCCAAGGTGGCCGGCGGCAGTTTT
GGGGAGAGGACGCTTTCGTGGATCCGTGGCGAAGACCGGAAGGTGGACAG
GAAGAACATTAGAGCTGCTGTGCAAGGCATTCTGCAGCGGCTTGGGACCG
ACTACATTGACCTTTTACAAATCCACTGGCCCGATCGTTATGTACCGCTG
TTCGGCGCGGGCGTATACGACCCTGCAAGAGCGCTGGATTCGGTGCCGTT
CGAGCAGCAGGTTGCCGCCATGGACGAACTGATCCGGGAGGGCTTGATAC
GAAATTACGGGCTAAGCAACGAGACGGCGTGGGGCGTAGCGCAATTCGAC
GCCAAGGCTAGGGCAAACGGAATGGCTCGCCCTGTATCCATCCAGAACTC
TTACAGCCTGATTTACCGCGATTTCGAAGGGCACCTGGCGGAGGCATGCG
CTGAGAGAAACGCGAACTTGAGCCTTCTCGCATACAGCCCACTAGCAGGC
GGGGCGCTGAGCGGCAAATATCTGGATCCGCCTATTCCTCGCGACGCGCG
GTTTGCGCTATACCCGGGATACATGAAGCGCTTCCAGAGCAGCATAGCGG
CAGAGGCGATCAGAGAGTACAAGCGGGTGGCGGACGATGCCGGGTTGAGC
TTGACGGAGTTGTCGCTCGGCTGGTGCAAGAGCAGGTGGTTTGTTGCCAG
TACGATCATCGGGGCGACCAACATAAGCCAGCTGAAGCAGAACTTGGATA
CGTTCTCCGTTGAGCTTGACGACTCGGTGATTGAGGCAGTAGAAAAAGTG
TACGTGCGCTATCGCGACCCTTCCAAGACGTCGTGA
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