Gchil7238.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7238.t1
Unique NameGchil7238.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:820808..821181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD06634
Preferred nameFBA1
PFAMsF_bP_aldolase
Max annot lvl2759|Eukaryota
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01192,ko:K01624
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00511,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04142,map00010,map00030,map00051,map00511,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04142
KEGG ModuleM00001,M00003,M00165,M00167,M00344,M00345
GOsGO:0003674,GO:0003824,GO:0004332,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006006,GO:0006007,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006735,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009277,GO:0009435,GO:0009605,GO:0009607,GO:0009986,GO:0009987,GO:0016020,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0030312,GO:0030446,GO:0031347,GO:0031349,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035821,GO:0042866,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044003,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044403,GO:0044416,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046872,GO:0046914,GO:0046939,GO:0048518,GO:0048583,GO:0048584,GO:0050789,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0051817,GO:0052031,GO:0052173,GO:0052200,GO:0052251,GO:0052255,GO:0052509,GO:0052510,GO:0055086,GO:0055114,GO:0061615,GO:0061620,GO:0061621,GO:0061718,GO:0065007,GO:0071704,GO:0071944,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0075136,GO:0080134,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue7.07e-15
EggNOG OGsCOG0191@1|root,KOG4153@2759|Eukaryota
EC3.2.1.25,4.1.2.13
Descriptionfructose-bisphosphate aldolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7238Gchil7238Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 820808..821181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1Gchil7238.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 820808..821181 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1.start1Gchil7238.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 820808..820810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1.CDS1Gchil7238.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 820808..820956 +
Gchil7238.t1.CDS2Gchil7238.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 821055..821181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1.exon1Gchil7238.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 820808..820956 +
Gchil7238.t1.exon2Gchil7238.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 821055..821181 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1.intron1Gchil7238.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 820957..821054 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7238.t1.stop1Gchil7238.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 821179..821181 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7238.t1 ID=Gchil7238.t1|Name=Gchil7238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=92bp
MAFVSSFSGVTVRSATNNRAVCSAAPRRAAKWTMSDEGGKGFGGGEATRD
PSPTKIDPNDPKGKQTAIHPAETFAEYQARLKREAQEKKGQ*
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spliced messenger RNA

>Gchil7238.t1 ID=Gchil7238.t1|Name=Gchil7238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00004441_pilon:820808..821181+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTCTCCTCTTTCTCTGGCGTCACCGTGCGCAGTGCTACCAA
CAACCGTGCCGTCTGCAGCGCGGCGCCGCGTCGCGCCGCCAAGTGGACCA
TGAGTGACGAAGGAGGAAAGGGGTTCGGCGGCGGTGAAGCAACAAGAGAC
CCGTCGCCAACCAAGATCGACCCCAACGACCCGAAGGGCAAGCAGACCGC
CATTCACCCCGCCGAGACTTTTGCCGAGTACCAGGCCCGCCTGAAGCGTG
AGGCTCAGGAGAAGAAGGGCCAGTAG
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protein sequence of Gchil7238.t1

>Gchil7238.t1 ID=Gchil7238.t1|Name=Gchil7238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=92bp
MAFVSSFSGVTVRSATNNRAVCSAAPRRAAKWTMSDEGGKGFGGGEATRD
PSPTKIDPNDPKGKQTAIHPAETFAEYQARLKREAQEKKGQ*
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mRNA from alignment at tig00004441_pilon:820808..821181+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7238.t1 ID=Gchil7238.t1|Name=Gchil7238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp|location=Sequence derived from alignment at tig00004441_pilon:820808..821181+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCTCCTCTTTCTCTGGCGTCACCGTGCGCAGTGCTACCAA
CAACCGTGCCGTCTGCAGCGCGGCGCCGCGTCGCGCCGCCAAGTGGACCA
TGAGTGACGAAGGAGGAAAGGGGTTCGGCGGCGGTGAAGCAACAAGAGAG
TAAGTCATCAAGTCCATTTTTCTCACACTTGAAAATGGCTATCGCAGCAC
ACGTTGTACTAATCATCATGCTTGTTACTGTTTCCTTCGTCAATCAGCCC
GTCGCCAACCAAGATCGACCCCAACGACCCGAAGGGCAAGCAGACCGCCA
TTCACCCCGCCGAGACTTTTGCCGAGTACCAGGCCCGCCTGAAGCGTGAG
GCTCAGGAGAAGAAGGGCCAGTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:820808..821181+

>Gchil7238.t1 ID=Gchil7238.t1|Name=Gchil7238.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00004441_pilon:820808..821181+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTTCGTCTCCTCTTTCTCTGGCGTCACCGTGCGCAGTGCTACCAA
CAACCGTGCCGTCTGCAGCGCGGCGCCGCGTCGCGCCGCCAAGTGGACCA
TGAGTGACGAAGGAGGAAAGGGGTTCGGCGGCGGTGAAGCAACAAGAGAC
CCGTCGCCAACCAAGATCGACCCCAACGACCCGAAGGGCAAGCAGACCGC
CATTCACCCCGCCGAGACTTTTGCCGAGTACCAGGCCCGCCTGAAGCGTG
AGGCTCAGGAGAAGAAGGGCCAGTAG
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