Gchil7233.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7233.t1
Unique NameGchil7233.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:810858..812241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704433.1
Preferred namePEX12
PFAMsPex2_Pex12
Max annot lvl2759|Eukaryota
KEGG koko:K03327,ko:K06653,ko:K13345
KEGG TC2.A.66.1,3.A.20.1
KEGG Pathwayko04111,ko04146,map04111,map04146
GOsGO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
Evalue2.14e-47
EggNOG OGsKOG0826@1|root,KOG0826@2759|Eukaryota
Descriptionprotein import into peroxisome matrix
COG categoryO
BRITEko00000,ko00001,ko02000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7233Gchil7233Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 810858..812241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1Gchil7233.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 810858..812241 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1.stop1Gchil7233.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 810858..810860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1.CDS1Gchil7233.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 810858..810992 -
Gchil7233.t1.CDS2Gchil7233.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 811069..811209 -
Gchil7233.t1.CDS3Gchil7233.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 811306..812241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1.exon1Gchil7233.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 810858..810992 -
Gchil7233.t1.exon2Gchil7233.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 811069..811209 -
Gchil7233.t1.exon3Gchil7233.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 811306..812241 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1.intron1Gchil7233.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 810993..811068 -
Gchil7233.t1.intron2Gchil7233.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 811210..811305 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7233.t1.start1Gchil7233.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 812239..812241 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7233.t1 ID=Gchil7233.t1|Name=Gchil7233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=404bp
MSNIPSARPSFFEVYAAEQLGSALRPAFRYLLETLSVRNPYVLRVANWSD
EVFSSLLLVLETFQLNTDSALLSESFYSLRRSAVGSFEPILFDAPLTNPH
ILGSVLCGVIIPYIRAKLDSWYSAQTGGAAAVMLQELQFPAQHVEESVNP
TSRTPTSMSARLQTSEARETLLFKLKISFLRLLNFPSILIRLTKNILRHV
QSEAFKRQLIFWYPKIRALVDAVNLIYGMSYLYGHSKYYNLSLAMQGLIL
RRVSTIDLLRLSSVLLDSTGRSKPNLLQVIRNFTGKVIGVLRIAFYASVF
GFRFLQYYYAAEAAAPKDIGAVIPPPAPLEPASGVNRELAKEPGKCPVCH
QNRTNSTACTTSGYVFCYLCIVSSLQRTQKCPVTSAPATVDDLVRVYENG
GDV*
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spliced messenger RNA

>Gchil7233.t1 ID=Gchil7233.t1|Name=Gchil7233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00004441_pilon:810858..812241- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAATATCCCATCAGCCAGACCTTCGTTTTTCGAGGTTTATGCCGC
TGAGCAACTGGGCAGTGCGTTAAGACCAGCTTTCCGCTATCTGTTAGAAA
CACTATCAGTCCGAAACCCGTATGTTCTCCGAGTGGCGAACTGGTCTGAT
GAAGTTTTCTCTAGCTTATTGCTTGTTCTCGAAACTTTCCAGCTAAATAC
AGATTCTGCCCTCTTGTCAGAATCATTTTACTCTCTTCGAAGATCTGCAG
TGGGATCGTTTGAGCCAATTTTGTTTGATGCCCCACTGACAAATCCTCAT
ATTCTAGGCAGCGTCTTGTGTGGCGTCATAATTCCATATATTCGAGCCAA
ACTTGACAGTTGGTACTCAGCTCAAACCGGAGGGGCTGCCGCCGTGATGC
TCCAAGAACTGCAATTTCCTGCACAACATGTTGAAGAAAGCGTAAACCCA
ACCTCGCGAACACCTACTTCAATGTCTGCACGGTTGCAAACGTCAGAAGC
CCGTGAAACTCTCCTGTTCAAACTCAAGATTTCTTTCCTTCGCTTGCTTA
ACTTTCCCTCCATTCTGATCCGTCTTACAAAGAACATTCTTCGCCACGTA
CAAAGCGAAGCCTTTAAACGGCAGCTAATATTCTGGTATCCGAAGATTCG
CGCTTTAGTAGATGCAGTCAACCTGATATATGGTATGTCGTACTTGTACG
GACATTCGAAGTACTACAACTTATCTCTCGCAATGCAAGGCCTTATTCTG
AGACGCGTAAGCACGATAGATCTTTTGCGACTATCATCTGTGCTACTAGA
CTCTACTGGTCGCTCAAAACCAAATTTGCTTCAAGTTATCCGCAATTTCA
CCGGAAAGGTGATAGGCGTGCTCCGAATAGCCTTTTATGCAAGTGTATTC
GGCTTTCGCTTTCTCCAGTATTATTATGCTGCTGAGGCTGCAGCACCAAA
AGATATAGGTGCAGTTATTCCACCGCCCGCGCCACTTGAACCAGCTTCCG
GTGTCAATCGTGAACTCGCAAAAGAACCCGGAAAGTGTCCAGTATGTCAC
CAAAATCGAACGAACTCTACTGCATGTACAACCTCGGGCTACGTATTCTG
CTATCTTTGCATCGTATCGAGTCTACAACGAACACAAAAATGCCCCGTTA
CTTCGGCTCCTGCCACAGTAGATGATCTTGTTCGAGTCTATGAGAACGGC
GGTGACGTATGA
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protein sequence of Gchil7233.t1

>Gchil7233.t1 ID=Gchil7233.t1|Name=Gchil7233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=404bp
MSNIPSARPSFFEVYAAEQLGSALRPAFRYLLETLSVRNPYVLRVANWSD
EVFSSLLLVLETFQLNTDSALLSESFYSLRRSAVGSFEPILFDAPLTNPH
ILGSVLCGVIIPYIRAKLDSWYSAQTGGAAAVMLQELQFPAQHVEESVNP
TSRTPTSMSARLQTSEARETLLFKLKISFLRLLNFPSILIRLTKNILRHV
QSEAFKRQLIFWYPKIRALVDAVNLIYGMSYLYGHSKYYNLSLAMQGLIL
RRVSTIDLLRLSSVLLDSTGRSKPNLLQVIRNFTGKVIGVLRIAFYASVF
GFRFLQYYYAAEAAAPKDIGAVIPPPAPLEPASGVNRELAKEPGKCPVCH
QNRTNSTACTTSGYVFCYLCIVSSLQRTQKCPVTSAPATVDDLVRVYENG
GDV*
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mRNA from alignment at tig00004441_pilon:810858..812241-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7233.t1 ID=Gchil7233.t1|Name=Gchil7233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1384bp|location=Sequence derived from alignment at tig00004441_pilon:810858..812241- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAATATCCCATCAGCCAGACCTTCGTTTTTCGAGGTTTATGCCGC
TGAGCAACTGGGCAGTGCGTTAAGACCAGCTTTCCGCTATCTGTTAGAAA
CACTATCAGTCCGAAACCCGTATGTTCTCCGAGTGGCGAACTGGTCTGAT
GAAGTTTTCTCTAGCTTATTGCTTGTTCTCGAAACTTTCCAGCTAAATAC
AGATTCTGCCCTCTTGTCAGAATCATTTTACTCTCTTCGAAGATCTGCAG
TGGGATCGTTTGAGCCAATTTTGTTTGATGCCCCACTGACAAATCCTCAT
ATTCTAGGCAGCGTCTTGTGTGGCGTCATAATTCCATATATTCGAGCCAA
ACTTGACAGTTGGTACTCAGCTCAAACCGGAGGGGCTGCCGCCGTGATGC
TCCAAGAACTGCAATTTCCTGCACAACATGTTGAAGAAAGCGTAAACCCA
ACCTCGCGAACACCTACTTCAATGTCTGCACGGTTGCAAACGTCAGAAGC
CCGTGAAACTCTCCTGTTCAAACTCAAGATTTCTTTCCTTCGCTTGCTTA
ACTTTCCCTCCATTCTGATCCGTCTTACAAAGAACATTCTTCGCCACGTA
CAAAGCGAAGCCTTTAAACGGCAGCTAATATTCTGGTATCCGAAGATTCG
CGCTTTAGTAGATGCAGTCAACCTGATATATGGTATGTCGTACTTGTACG
GACATTCGAAGTACTACAACTTATCTCTCGCAATGCAAGGCCTTATTCTG
AGACGCGTAAGCACGATAGATCTTTTGCGACTATCATCTGTGCTACTAGA
CTCTACTGGTCGCTCAAAACCAAATTTGCTTCAAGTTATCCGCAATTTCA
CCGGAAAGGTGATAGGCGTGCTCCGAATAGCCTTTTATGCAAGTGTATTC
GGCTTTCGCTTTCTCCAGTATTATTATGCTGCTGAGGTACGTTTACGATT
AAACGACAATCGCATATTACAATCGGATTCTAACCAATAATTCTTCCATT
CTGTTATTATTCTTTCGATGTTTGTACTCTAGGCTGCAGCACCAAAAGAT
ATAGGTGCAGTTATTCCACCGCCCGCGCCACTTGAACCAGCTTCCGGTGT
CAATCGTGAACTCGCAAAAGAACCCGGAAAGTGTCCAGTATGTCACCAAA
ATCGAACGAACTCTACTGCATGTGTACGTTGAACCAAAGCACAAGAATAT
TTGAAGAGACGCGAGCAGACTCTAACCTCCAAAACACTCGAAAATTCAGA
CAACCTCGGGCTACGTATTCTGCTATCTTTGCATCGTATCGAGTCTACAA
CGAACACAAAAATGCCCCGTTACTTCGGCTCCTGCCACAGTAGATGATCT
TGTTCGAGTCTATGAGAACGGCGGTGACGTATGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:810858..812241-

>Gchil7233.t1 ID=Gchil7233.t1|Name=Gchil7233.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00004441_pilon:810858..812241- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAATATCCCATCAGCCAGACCTTCGTTTTTCGAGGTTTATGCCGC
TGAGCAACTGGGCAGTGCGTTAAGACCAGCTTTCCGCTATCTGTTAGAAA
CACTATCAGTCCGAAACCCGTATGTTCTCCGAGTGGCGAACTGGTCTGAT
GAAGTTTTCTCTAGCTTATTGCTTGTTCTCGAAACTTTCCAGCTAAATAC
AGATTCTGCCCTCTTGTCAGAATCATTTTACTCTCTTCGAAGATCTGCAG
TGGGATCGTTTGAGCCAATTTTGTTTGATGCCCCACTGACAAATCCTCAT
ATTCTAGGCAGCGTCTTGTGTGGCGTCATAATTCCATATATTCGAGCCAA
ACTTGACAGTTGGTACTCAGCTCAAACCGGAGGGGCTGCCGCCGTGATGC
TCCAAGAACTGCAATTTCCTGCACAACATGTTGAAGAAAGCGTAAACCCA
ACCTCGCGAACACCTACTTCAATGTCTGCACGGTTGCAAACGTCAGAAGC
CCGTGAAACTCTCCTGTTCAAACTCAAGATTTCTTTCCTTCGCTTGCTTA
ACTTTCCCTCCATTCTGATCCGTCTTACAAAGAACATTCTTCGCCACGTA
CAAAGCGAAGCCTTTAAACGGCAGCTAATATTCTGGTATCCGAAGATTCG
CGCTTTAGTAGATGCAGTCAACCTGATATATGGTATGTCGTACTTGTACG
GACATTCGAAGTACTACAACTTATCTCTCGCAATGCAAGGCCTTATTCTG
AGACGCGTAAGCACGATAGATCTTTTGCGACTATCATCTGTGCTACTAGA
CTCTACTGGTCGCTCAAAACCAAATTTGCTTCAAGTTATCCGCAATTTCA
CCGGAAAGGTGATAGGCGTGCTCCGAATAGCCTTTTATGCAAGTGTATTC
GGCTTTCGCTTTCTCCAGTATTATTATGCTGCTGAGGCTGCAGCACCAAA
AGATATAGGTGCAGTTATTCCACCGCCCGCGCCACTTGAACCAGCTTCCG
GTGTCAATCGTGAACTCGCAAAAGAACCCGGAAAGTGTCCAGTATGTCAC
CAAAATCGAACGAACTCTACTGCATGTACAACCTCGGGCTACGTATTCTG
CTATCTTTGCATCGTATCGAGTCTACAACGAACACAAAAATGCCCCGTTA
CTTCGGCTCCTGCCACAGTAGATGATCTTGTTCGAGTCTATGAGAACGGC
GGTGACGTATGA
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