Gchil7232.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7232.t1
Unique Name	Gchil7232.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	402

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:809460..810665 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1183438.GKIL_3925
PFAMs	Gal-3-0_sulfotr,Sulfotransfer_2
Max annot lvl	1117\|Cyanobacteria
Evalue	0.000777
EggNOG OGs	2AWP9@1\|root,31NK6@2\|Bacteria,1G6HF@1117\|Cyanobacteria
Description	Galactose-3-O-sulfotransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7232	Gchil7232	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 809460..810665 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7232.t1.start1	Gchil7232.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 809460..809462 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7232.t1.CDS1	Gchil7232.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 809460..810665 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7232.t1.exon1	Gchil7232.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 809460..810665 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7232.t1.stop1	Gchil7232.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 810663..810665 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7232.t1	Gchil7232.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 809460..810665 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:809460..810665+
coding sequence from alignment at tig00004441_pilon:809460..810665+

mRNA sequence

>Gchil7232.t1 ID=Gchil7232.t1|Name=Gchil7232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MAKVLALTRLTFSRSYTVFILALVHVLFIASAARPIPKRNSADAKTSNRL
DSSVHSSRQNADPSIDPCLGRPTPVPIPGNLSRPPSLFFLHIPKTAGTLV
YNIAIQYANKTKGLACQFLFDGNRYSCSQYQPSFSPVPKPATNSLEGDAV
KAWDNKNMGAKENLYKLGACRSIRGHVTYSLRDVIQRPVVSMTIMRHPIE
RLVSMFEFALMMIETQPNSSGWDSWLSGVPLEHELANSSSLLNRGFYDEN
GEWVGKDNIGFSFHFYGVLHQLSGVQPIFRDVGKPKSFRMGNAKEMAEKA
KDNLCSTHILGVQNNMSATVDTIFEYMRPYARWNSREKENAKHAVVNRNN
RKRRSHNRDYIPVSAIRELERRLGHEIEVFHFAEAIVAHRQWLKDNRQKT
T*

spliced messenger RNA

>Gchil7232.t1 ID=Gchil7232.t1|Name=Gchil7232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004441_pilon:809460..810665+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAAGTATTGGCACTCACTCGTCTAACATTTTCCCGTTCTTACAC
AGTCTTTATTCTCGCTCTCGTTCACGTACTGTTCATTGCATCTGCGGCAC
GCCCTATACCGAAGAGAAATTCGGCTGACGCAAAGACATCGAATCGTCTG
GATTCATCCGTGCACAGCTCACGTCAAAATGCGGATCCAAGCATAGATCC
ATGCCTCGGAAGGCCTACTCCAGTTCCTATTCCCGGCAATCTTTCTCGCC
CTCCTTCACTTTTCTTCTTGCATATCCCTAAAACTGCTGGAACTCTAGTG
TACAACATCGCCATTCAGTATGCAAACAAAACCAAAGGTCTAGCGTGCCA
ATTTTTGTTTGATGGAAATCGATATTCATGCAGCCAATATCAACCGAGCT
TTTCTCCGGTTCCAAAGCCTGCCACAAATTCTCTCGAAGGAGACGCTGTG
AAAGCATGGGATAACAAGAACATGGGAGCAAAGGAAAACTTGTACAAGTT
AGGGGCCTGCAGGAGCATTCGTGGGCATGTGACATACTCTTTGCGAGATG
TTATTCAGAGGCCAGTTGTATCAATGACCATAATGCGTCATCCTATAGAG
AGATTAGTAAGCATGTTTGAGTTTGCTCTAATGATGATCGAAACTCAACC
CAACTCGAGTGGATGGGATTCATGGTTGTCTGGAGTTCCGCTGGAACATG
AACTCGCCAACTCATCTTCTCTTCTCAATAGAGGATTCTACGATGAAAAC
GGCGAATGGGTTGGGAAAGATAATATCGGGTTCTCTTTTCATTTCTACGG
TGTACTCCATCAACTTTCTGGAGTGCAACCAATCTTTCGTGATGTGGGGA
AACCCAAATCCTTTCGAATGGGAAACGCAAAAGAGATGGCCGAAAAGGCC
AAAGATAATCTATGCTCTACCCACATTCTCGGAGTCCAGAACAATATGAG
CGCGACTGTGGACACCATTTTCGAGTACATGCGCCCTTACGCCCGGTGGA
ATTCCAGAGAGAAAGAAAATGCGAAACATGCTGTTGTCAACCGGAATAAC
CGTAAGCGACGCTCACACAATAGGGACTACATCCCCGTTTCTGCCATAAG
AGAACTTGAACGGCGTCTTGGACATGAGATTGAAGTATTTCATTTCGCGG
AGGCTATCGTTGCACATCGCCAATGGTTGAAAGACAACAGACAGAAGACA
ACTTAG

protein sequence of Gchil7232.t1

>Gchil7232.t1 ID=Gchil7232.t1|Name=Gchil7232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MAKVLALTRLTFSRSYTVFILALVHVLFIASAARPIPKRNSADAKTSNRL
DSSVHSSRQNADPSIDPCLGRPTPVPIPGNLSRPPSLFFLHIPKTAGTLV
YNIAIQYANKTKGLACQFLFDGNRYSCSQYQPSFSPVPKPATNSLEGDAV
KAWDNKNMGAKENLYKLGACRSIRGHVTYSLRDVIQRPVVSMTIMRHPIE
RLVSMFEFALMMIETQPNSSGWDSWLSGVPLEHELANSSSLLNRGFYDEN
GEWVGKDNIGFSFHFYGVLHQLSGVQPIFRDVGKPKSFRMGNAKEMAEKA
KDNLCSTHILGVQNNMSATVDTIFEYMRPYARWNSREKENAKHAVVNRNN
RKRRSHNRDYIPVSAIRELERRLGHEIEVFHFAEAIVAHRQWLKDNRQKT
T*

mRNA from alignment at tig00004441_pilon:809460..810665+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7232.t1 ID=Gchil7232.t1|Name=Gchil7232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004441_pilon:809460..810665+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAAAGTATTGGCACTCACTCGTCTAACATTTTCCCGTTCTTACAC
AGTCTTTATTCTCGCTCTCGTTCACGTACTGTTCATTGCATCTGCGGCAC
GCCCTATACCGAAGAGAAATTCGGCTGACGCAAAGACATCGAATCGTCTG
GATTCATCCGTGCACAGCTCACGTCAAAATGCGGATCCAAGCATAGATCC
ATGCCTCGGAAGGCCTACTCCAGTTCCTATTCCCGGCAATCTTTCTCGCC
CTCCTTCACTTTTCTTCTTGCATATCCCTAAAACTGCTGGAACTCTAGTG
TACAACATCGCCATTCAGTATGCAAACAAAACCAAAGGTCTAGCGTGCCA
ATTTTTGTTTGATGGAAATCGATATTCATGCAGCCAATATCAACCGAGCT
TTTCTCCGGTTCCAAAGCCTGCCACAAATTCTCTCGAAGGAGACGCTGTG
AAAGCATGGGATAACAAGAACATGGGAGCAAAGGAAAACTTGTACAAGTT
AGGGGCCTGCAGGAGCATTCGTGGGCATGTGACATACTCTTTGCGAGATG
TTATTCAGAGGCCAGTTGTATCAATGACCATAATGCGTCATCCTATAGAG
AGATTAGTAAGCATGTTTGAGTTTGCTCTAATGATGATCGAAACTCAACC
CAACTCGAGTGGATGGGATTCATGGTTGTCTGGAGTTCCGCTGGAACATG
AACTCGCCAACTCATCTTCTCTTCTCAATAGAGGATTCTACGATGAAAAC
GGCGAATGGGTTGGGAAAGATAATATCGGGTTCTCTTTTCATTTCTACGG
TGTACTCCATCAACTTTCTGGAGTGCAACCAATCTTTCGTGATGTGGGGA
AACCCAAATCCTTTCGAATGGGAAACGCAAAAGAGATGGCCGAAAAGGCC
AAAGATAATCTATGCTCTACCCACATTCTCGGAGTCCAGAACAATATGAG
CGCGACTGTGGACACCATTTTCGAGTACATGCGCCCTTACGCCCGGTGGA
ATTCCAGAGAGAAAGAAAATGCGAAACATGCTGTTGTCAACCGGAATAAC
CGTAAGCGACGCTCACACAATAGGGACTACATCCCCGTTTCTGCCATAAG
AGAACTTGAACGGCGTCTTGGACATGAGATTGAAGTATTTCATTTCGCGG
AGGCTATCGTTGCACATCGCCAATGGTTGAAAGACAACAGACAGAAGACA
ACTTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:809460..810665+

>Gchil7232.t1 ID=Gchil7232.t1|Name=Gchil7232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00004441_pilon:809460..810665+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAAAGTATTGGCACTCACTCGTCTAACATTTTCCCGTTCTTACAC
AGTCTTTATTCTCGCTCTCGTTCACGTACTGTTCATTGCATCTGCGGCAC
GCCCTATACCGAAGAGAAATTCGGCTGACGCAAAGACATCGAATCGTCTG
GATTCATCCGTGCACAGCTCACGTCAAAATGCGGATCCAAGCATAGATCC
ATGCCTCGGAAGGCCTACTCCAGTTCCTATTCCCGGCAATCTTTCTCGCC
CTCCTTCACTTTTCTTCTTGCATATCCCTAAAACTGCTGGAACTCTAGTG
TACAACATCGCCATTCAGTATGCAAACAAAACCAAAGGTCTAGCGTGCCA
ATTTTTGTTTGATGGAAATCGATATTCATGCAGCCAATATCAACCGAGCT
TTTCTCCGGTTCCAAAGCCTGCCACAAATTCTCTCGAAGGAGACGCTGTG
AAAGCATGGGATAACAAGAACATGGGAGCAAAGGAAAACTTGTACAAGTT
AGGGGCCTGCAGGAGCATTCGTGGGCATGTGACATACTCTTTGCGAGATG
TTATTCAGAGGCCAGTTGTATCAATGACCATAATGCGTCATCCTATAGAG
AGATTAGTAAGCATGTTTGAGTTTGCTCTAATGATGATCGAAACTCAACC
CAACTCGAGTGGATGGGATTCATGGTTGTCTGGAGTTCCGCTGGAACATG
AACTCGCCAACTCATCTTCTCTTCTCAATAGAGGATTCTACGATGAAAAC
GGCGAATGGGTTGGGAAAGATAATATCGGGTTCTCTTTTCATTTCTACGG
TGTACTCCATCAACTTTCTGGAGTGCAACCAATCTTTCGTGATGTGGGGA
AACCCAAATCCTTTCGAATGGGAAACGCAAAAGAGATGGCCGAAAAGGCC
AAAGATAATCTATGCTCTACCCACATTCTCGGAGTCCAGAACAATATGAG
CGCGACTGTGGACACCATTTTCGAGTACATGCGCCCTTACGCCCGGTGGA
ATTCCAGAGAGAAAGAAAATGCGAAACATGCTGTTGTCAACCGGAATAAC
CGTAAGCGACGCTCACACAATAGGGACTACATCCCCGTTTCTGCCATAAG
AGAACTTGAACGGCGTCTTGGACATGAGATTGAAGTATTTCATTTCGCGG
AGGCTATCGTTGCACATCGCCAATGGTTGAAAGACAACAGACAGAAGACA
ACTTAG