Gchil7228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7228.t1
Unique NameGchil7228.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:794954..795463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4537.OPUNC08G18070.1
PFAMsWGG
Max annot lvl35493|Streptophyta
KEGG koko:K14800
Evalue1.54e-11
EggNOG OGsKOG4032@1|root,KOG4032@2759|Eukaryota,37V0F@33090|Viridiplantae,3GIKD@35493|Streptophyta,3KZMI@4447|Liliopsida,3IC3I@38820|Poales
DescriptionPre-rRNA-processing protein TSR2
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7228Gchil7228Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 794954..795463 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7228.t1.start1Gchil7228.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 794954..794956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7228.t1.CDS1Gchil7228.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 794954..795463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7228.t1.exon1Gchil7228.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 794954..795463 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7228.t1.stop1Gchil7228.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 795461..795463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7228.t1Gchil7228.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 794954..795463 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7228.t1 ID=Gchil7228.t1|Name=Gchil7228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=170bp
MDFENATQAVSTAIRSIFERWTALKLVIEHQMGGVTDDATKLMDTTISMA
TSPLKCHDEDDFIDLFYDAFDQMHCDVEDGSLEEIASQIVRVRDAAKNGD
YAPAVQLVSKANKASTAAPLQSIDGGEAFVDNDQHDHDDDKLSLPSPTAE
KPMMDDDGFTEVRRGGGHR*
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spliced messenger RNA

>Gchil7228.t1 ID=Gchil7228.t1|Name=Gchil7228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00004441_pilon:794954..795463+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTTGAAAATGCAACGCAAGCCGTATCCACAGCTATCCGCTCCAT
CTTTGAGAGATGGACAGCATTAAAGCTTGTCATTGAGCACCAAATGGGAG
GAGTTACCGATGATGCAACCAAGCTAATGGACACAACAATTTCTATGGCA
ACCAGCCCATTGAAGTGTCACGATGAAGATGATTTCATCGACTTATTCTA
TGATGCCTTCGATCAAATGCATTGTGACGTGGAGGACGGTAGTCTAGAGG
AAATAGCGTCGCAGATTGTACGTGTACGAGATGCAGCAAAGAACGGTGAT
TATGCCCCGGCCGTGCAGCTTGTGTCTAAGGCAAACAAAGCAAGCACCGC
AGCCCCTCTTCAATCGATAGATGGCGGTGAGGCTTTCGTCGATAACGATC
AACATGATCATGACGACGATAAATTATCACTGCCTTCACCAACCGCCGAA
AAGCCGATGATGGATGATGATGGATTCACGGAAGTGAGACGTGGCGGAGG
GCATCGGTAG
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protein sequence of Gchil7228.t1

>Gchil7228.t1 ID=Gchil7228.t1|Name=Gchil7228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=170bp
MDFENATQAVSTAIRSIFERWTALKLVIEHQMGGVTDDATKLMDTTISMA
TSPLKCHDEDDFIDLFYDAFDQMHCDVEDGSLEEIASQIVRVRDAAKNGD
YAPAVQLVSKANKASTAAPLQSIDGGEAFVDNDQHDHDDDKLSLPSPTAE
KPMMDDDGFTEVRRGGGHR*
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mRNA from alignment at tig00004441_pilon:794954..795463+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7228.t1 ID=Gchil7228.t1|Name=Gchil7228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00004441_pilon:794954..795463+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTTTGAAAATGCAACGCAAGCCGTATCCACAGCTATCCGCTCCAT
CTTTGAGAGATGGACAGCATTAAAGCTTGTCATTGAGCACCAAATGGGAG
GAGTTACCGATGATGCAACCAAGCTAATGGACACAACAATTTCTATGGCA
ACCAGCCCATTGAAGTGTCACGATGAAGATGATTTCATCGACTTATTCTA
TGATGCCTTCGATCAAATGCATTGTGACGTGGAGGACGGTAGTCTAGAGG
AAATAGCGTCGCAGATTGTACGTGTACGAGATGCAGCAAAGAACGGTGAT
TATGCCCCGGCCGTGCAGCTTGTGTCTAAGGCAAACAAAGCAAGCACCGC
AGCCCCTCTTCAATCGATAGATGGCGGTGAGGCTTTCGTCGATAACGATC
AACATGATCATGACGACGATAAATTATCACTGCCTTCACCAACCGCCGAA
AAGCCGATGATGGATGATGATGGATTCACGGAAGTGAGACGTGGCGGAGG
GCATCGGTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:794954..795463+

>Gchil7228.t1 ID=Gchil7228.t1|Name=Gchil7228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00004441_pilon:794954..795463+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTTTGAAAATGCAACGCAAGCCGTATCCACAGCTATCCGCTCCAT
CTTTGAGAGATGGACAGCATTAAAGCTTGTCATTGAGCACCAAATGGGAG
GAGTTACCGATGATGCAACCAAGCTAATGGACACAACAATTTCTATGGCA
ACCAGCCCATTGAAGTGTCACGATGAAGATGATTTCATCGACTTATTCTA
TGATGCCTTCGATCAAATGCATTGTGACGTGGAGGACGGTAGTCTAGAGG
AAATAGCGTCGCAGATTGTACGTGTACGAGATGCAGCAAAGAACGGTGAT
TATGCCCCGGCCGTGCAGCTTGTGTCTAAGGCAAACAAAGCAAGCACCGC
AGCCCCTCTTCAATCGATAGATGGCGGTGAGGCTTTCGTCGATAACGATC
AACATGATCATGACGACGATAAATTATCACTGCCTTCACCAACCGCCGAA
AAGCCGATGATGGATGATGATGGATTCACGGAAGTGAGACGTGGCGGAGG
GCATCGGTAG
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