Gchil7223.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7223.t1
Unique NameGchil7223.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:698448..698941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7223Gchil7223Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 698448..698941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1Gchil7223.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 698448..698941 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1.start1Gchil7223.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 698448..698450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1.CDS1Gchil7223.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 698448..698596 +
Gchil7223.t1.CDS2Gchil7223.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 698685..698758 +
Gchil7223.t1.CDS3Gchil7223.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 698853..698941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1.exon1Gchil7223.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 698448..698596 +
Gchil7223.t1.exon2Gchil7223.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 698685..698758 +
Gchil7223.t1.exon3Gchil7223.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 698853..698941 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1.intron1Gchil7223.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 698597..698684 +
Gchil7223.t1.intron2Gchil7223.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 698759..698852 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7223.t1.stop1Gchil7223.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 698939..698941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7223.t1 ID=Gchil7223.t1|Name=Gchil7223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=104bp
MVGGSTSSGATAAGFYAAAAASETDGDTFDGDAEFDEYDDWDYAEILSTV
SKNVKTYVLQPLVVGAAAAFGMSVGFAIFDATASVFTRKSPKVTTQPSLS
KSN*
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spliced messenger RNA

>Gchil7223.t1 ID=Gchil7223.t1|Name=Gchil7223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00004441_pilon:698448..698941+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGGCGGTAGCACATCATCTGGCGCAACTGCGGCAGGGTTTTATGC
TGCGGCCGCAGCTAGTGAGACCGATGGAGACACTTTTGATGGCGATGCAG
AATTTGATGAGTATGACGATTGGGATTATGCTGAAATACTGTCCACTGTG
TCGAAGAATGTGAAGACATATGTGTTGCAACCTCTTGTGGTTGGTGCTGC
TGCGGCGTTTGGAATGTCAGTCGGATTCGCCATTTTCGATGCAACAGCGT
CTGTCTTTACACGAAAATCACCGAAAGTAACCACTCAGCCATCTCTGAGC
AAAAGTAATTGA
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protein sequence of Gchil7223.t1

>Gchil7223.t1 ID=Gchil7223.t1|Name=Gchil7223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=104bp
MVGGSTSSGATAAGFYAAAAASETDGDTFDGDAEFDEYDDWDYAEILSTV
SKNVKTYVLQPLVVGAAAAFGMSVGFAIFDATASVFTRKSPKVTTQPSLS
KSN*
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mRNA from alignment at tig00004441_pilon:698448..698941+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7223.t1 ID=Gchil7223.t1|Name=Gchil7223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=494bp|location=Sequence derived from alignment at tig00004441_pilon:698448..698941+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGCGGTAGCACATCATCTGGCGCAACTGCGGCAGGGTTTTATGC
TGCGGCCGCAGCTAGTGAGACCGATGGAGACACTTTTGATGGCGATGCAG
AATTTGATGAGTATGACGATTGGGATTATGCTGAAATACTGTCCACTGTG
TAAGTTTCTGATTGAAGTGACGATCGCTAGAAGACGCTGTAGAGGTTAGT
ACCTGGAAGTACTAACTGTATCCTATCTCTCCTCTAGGTCGAAGAATGTG
AAGACATATGTGTTGCAACCTCTTGTGGTTGGTGCTGCTGCGGCGTTTGG
AATGTCAGTCGGTACGTAACAAAATCAAATTTAAAGTGCACCTCTTGTGC
GACATGGATAAACGATACTAACCTGAAAATATGAACTACCAACTCTCTGA
TGCAGGATTCGCCATTTTCGATGCAACAGCGTCTGTCTTTACACGAAAAT
CACCGAAAGTAACCACTCAGCCATCTCTGAGCAAAAGTAATTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:698448..698941+

>Gchil7223.t1 ID=Gchil7223.t1|Name=Gchil7223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00004441_pilon:698448..698941+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAGGCGGTAGCACATCATCTGGCGCAACTGCGGCAGGGTTTTATGC
TGCGGCCGCAGCTAGTGAGACCGATGGAGACACTTTTGATGGCGATGCAG
AATTTGATGAGTATGACGATTGGGATTATGCTGAAATACTGTCCACTGTG
TCGAAGAATGTGAAGACATATGTGTTGCAACCTCTTGTGGTTGGTGCTGC
TGCGGCGTTTGGAATGTCAGTCGGATTCGCCATTTTCGATGCAACAGCGT
CTGTCTTTACACGAAAATCACCGAAAGTAACCACTCAGCCATCTCTGAGC
AAAAGTAATTGA
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