Gchil7219.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7219.t1
Unique NameGchil7219.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:620724..621119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7219Gchil7219Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 620724..621119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1Gchil7219.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 620724..621119 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1.start1Gchil7219.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 620724..620726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1.CDS1Gchil7219.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 620724..620737 +
Gchil7219.t1.CDS2Gchil7219.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 620823..620837 +
Gchil7219.t1.CDS3Gchil7219.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 620948..621119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1.exon1Gchil7219.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 620724..620737 +
Gchil7219.t1.exon2Gchil7219.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 620823..620837 +
Gchil7219.t1.exon3Gchil7219.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 620948..621119 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1.intron1Gchil7219.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 620738..620822 +
Gchil7219.t1.intron2Gchil7219.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 620838..620947 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7219.t1.stop1Gchil7219.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 621117..621119 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7219.t1 ID=Gchil7219.t1|Name=Gchil7219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=67bp
MHVLAKTWYLDFENDVAEQIPRVGSRTKQFQTQKLLRRENVVDKTEIHVF
LKDVVEQQHKSKRISF*
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spliced messenger RNA

>Gchil7219.t1 ID=Gchil7219.t1|Name=Gchil7219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=201bp|location=Sequence derived from alignment at tig00004441_pilon:620724..621119+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTTCTGGCAAAGACCTGGTATCTTGACTTCGAGAACGATGTGGC
GGAACAGATACCAAGAGTAGGTTCAAGAACAAAACAGTTTCAAACTCAAA
AATTGCTTCGAAGGGAAAACGTTGTCGACAAAACTGAAATCCATGTGTTC
TTGAAAGATGTAGTGGAACAACAACACAAATCCAAGCGCATTTCATTTTA
G
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protein sequence of Gchil7219.t1

>Gchil7219.t1 ID=Gchil7219.t1|Name=Gchil7219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=67bp
MHVLAKTWYLDFENDVAEQIPRVGSRTKQFQTQKLLRRENVVDKTEIHVF
LKDVVEQQHKSKRISF*
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mRNA from alignment at tig00004441_pilon:620724..621119+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7219.t1 ID=Gchil7219.t1|Name=Gchil7219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004441_pilon:620724..621119+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTTCTGGCGTACGTATCcgtgcaaagcacggatcggagccactc
gtcacaactatttgttggacacacgccgtggtgtgtgtgtgtatgtTAGA
AAGACCTGGTATCTGTAAGTTCCTTTAATTGCCTTCTTTAACTGCCAAGA
TAATGGAACCGGAAGAATCCTTAGTTGAGAATCAATGGCAAACCCCATCA
ACTAATGACCATCAAACCTTTCAGTGACTTCGAGAACGATGTGGCGGAAC
AGATACCAAGAGTAGGTTCAAGAACAAAACAGTTTCAAACTCAAAAATTG
CTTCGAAGGGAAAACGTTGTCGACAAAACTGAAATCCATGTGTTCTTGAA
AGATGTAGTGGAACAACAACACAAATCCAAGCGCATTTCATTTTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:620724..621119+

>Gchil7219.t1 ID=Gchil7219.t1|Name=Gchil7219.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=201bp|location=Sequence derived from alignment at tig00004441_pilon:620724..621119+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTTCTGGCAAAGACCTGGTATCTTGACTTCGAGAACGATGTGGC
GGAACAGATACCAAGAGTAGGTTCAAGAACAAAACAGTTTCAAACTCAAA
AATTGCTTCGAAGGGAAAACGTTGTCGACAAAACTGAAATCCATGTGTTC
TTGAAAGATGTAGTGGAACAACAACACAAATCCAAGCGCATTTCATTTTA
G
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