Gchil7218.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7218.t1
Unique NameGchil7218.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:560761..561606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72664.XP_006394719.1
Max annot lvl35493|Streptophyta
GOsGO:0000902,GO:0000904,GO:0001558,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008544,GO:0009058,GO:0009059,GO:0009330,GO:0009653,GO:0009888,GO:0009913,GO:0009987,GO:0010026,GO:0010090,GO:0016043,GO:0022402,GO:0022622,GO:0030154,GO:0030307,GO:0030855,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040008,GO:0042023,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0044786,GO:0045927,GO:0046483,GO:0048364,GO:0048367,GO:0048468,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051276,GO:0060429,GO:0065007,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0090626,GO:0097159,GO:0099402,GO:1901360,GO:1901363,GO:1901576
Evalue6.28e-14
EggNOG OGs28MC6@1|root,2QTVM@2759|Eukaryota,37MCB@33090|Viridiplantae,3GCGZ@35493|Streptophyta,3HTV4@3699|Brassicales
Descriptiondouble-stranded DNA binding
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7218Gchil7218Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 560761..561606 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7218.t1.start1Gchil7218.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 560761..560763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7218.t1.CDS1Gchil7218.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 560761..561606 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7218.t1.exon1Gchil7218.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 560761..561606 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7218.t1.stop1Gchil7218.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 561604..561606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7218.t1Gchil7218.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 560761..561606 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7218.t1 ID=Gchil7218.t1|Name=Gchil7218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=282bp
MSFINSEDEFLSDSSGQLDLLSVKHNLQSVPDEILNQATTSRRASGKAHQ
TTNPEEPAWVLDHSQSRPTDRENRQRVLASLSEDEDDDSIIDLVSQEPNL
EDTQNTANDVTEENGISGLNAVQKRPRSQKVSHTPKNSLPLMMAPKINDS
LLLLQSSDESLDLSGDIGAVGRVKVAQDGIFFDIKGVVYRVSSHATNTAC
VVQMGEDEARVTSVMDEVLTLHMDRTLFASDEIIINGNLGDHTEEESLVR
EDGRNDEQLGGGKRNMESSSAGVRGTILGSK*
back to top

spliced messenger RNA

>Gchil7218.t1 ID=Gchil7218.t1|Name=Gchil7218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00004441_pilon:560761..561606+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTTATCAACAGCGAGGATGAGTTTCTGAGCGACAGCTCTGGGCA
ATTAGATCTTTTATCGGTGAAGCATAATTTACAATCAGTGCCTGACGAAA
TTCTGAACCAAGCAACCACTTCAAGAAGAGCGTCGGGGAAAGCTCACCAA
ACTACGAACCCGGAAGAACCAGCATGGGTGTTGGACCATTCCCAATCCCG
TCCCACGGATCGAGAGAATCGTCAGCGAGTTCTAGCTTCATTGTCTGAAG
ATGAAGATGACGATAGCATCATTGACTTAGTTTCGCAAGAGCCTAACCTT
GAGGACACGCAAAATACGGCCAACGACGTGACCGAGGAGAATGGCATAAG
CGGTCTGAACGCTGTGCAGAAACGTCCAAGATCCCAAAAGGTCTCTCACA
CTCCAAAAAATTCTCTGCCGTTGATGATGGCGCCGAAGATTAACGATTCT
TTACTTCTCTTGCAAAGCAGTGACGAAAGCCTTGATCTAAGTGGAGATAT
TGGGGCGGTTGGTCGAGTAAAAGTCGCTCAAGACGGCATTTTCTTTGACA
TAAAGGGGGTCGTTTATAGAGTATCTTCCCATGCTACAAACACAGCATGT
GTTGTTCAAATGGGAGAAGATGAAGCTCGTGTGACCTCGGTTATGGATGA
AGTGCTGACGTTGCACATGGATCGAACCCTTTTTGCTTCAGACGAGATCA
TCATAAACGGAAACCTAGGTGACCACACTGAGGAAGAAAGCTTAGTTAGA
GAGGACGGGAGAAATGATGAGCAGCTTGGAGGAGGAAAGAGAAATATGGA
AAGCAGTTCAGCTGGTGTAAGGGGGACGATATTAGGATCAAAGTGA
back to top

protein sequence of Gchil7218.t1

>Gchil7218.t1 ID=Gchil7218.t1|Name=Gchil7218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=282bp
MSFINSEDEFLSDSSGQLDLLSVKHNLQSVPDEILNQATTSRRASGKAHQ
TTNPEEPAWVLDHSQSRPTDRENRQRVLASLSEDEDDDSIIDLVSQEPNL
EDTQNTANDVTEENGISGLNAVQKRPRSQKVSHTPKNSLPLMMAPKINDS
LLLLQSSDESLDLSGDIGAVGRVKVAQDGIFFDIKGVVYRVSSHATNTAC
VVQMGEDEARVTSVMDEVLTLHMDRTLFASDEIIINGNLGDHTEEESLVR
EDGRNDEQLGGGKRNMESSSAGVRGTILGSK*
back to top

mRNA from alignment at tig00004441_pilon:560761..561606+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7218.t1 ID=Gchil7218.t1|Name=Gchil7218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00004441_pilon:560761..561606+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTATCAACAGCGAGGATGAGTTTCTGAGCGACAGCTCTGGGCA
ATTAGATCTTTTATCGGTGAAGCATAATTTACAATCAGTGCCTGACGAAA
TTCTGAACCAAGCAACCACTTCAAGAAGAGCGTCGGGGAAAGCTCACCAA
ACTACGAACCCGGAAGAACCAGCATGGGTGTTGGACCATTCCCAATCCCG
TCCCACGGATCGAGAGAATCGTCAGCGAGTTCTAGCTTCATTGTCTGAAG
ATGAAGATGACGATAGCATCATTGACTTAGTTTCGCAAGAGCCTAACCTT
GAGGACACGCAAAATACGGCCAACGACGTGACCGAGGAGAATGGCATAAG
CGGTCTGAACGCTGTGCAGAAACGTCCAAGATCCCAAAAGGTCTCTCACA
CTCCAAAAAATTCTCTGCCGTTGATGATGGCGCCGAAGATTAACGATTCT
TTACTTCTCTTGCAAAGCAGTGACGAAAGCCTTGATCTAAGTGGAGATAT
TGGGGCGGTTGGTCGAGTAAAAGTCGCTCAAGACGGCATTTTCTTTGACA
TAAAGGGGGTCGTTTATAGAGTATCTTCCCATGCTACAAACACAGCATGT
GTTGTTCAAATGGGAGAAGATGAAGCTCGTGTGACCTCGGTTATGGATGA
AGTGCTGACGTTGCACATGGATCGAACCCTTTTTGCTTCAGACGAGATCA
TCATAAACGGAAACCTAGGTGACCACACTGAGGAAGAAAGCTTAGTTAGA
GAGGACGGGAGAAATGATGAGCAGCTTGGAGGAGGAAAGAGAAATATGGA
AAGCAGTTCAGCTGGTGTAAGGGGGACGATATTAGGATCAAAGTGA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:560761..561606+

>Gchil7218.t1 ID=Gchil7218.t1|Name=Gchil7218.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00004441_pilon:560761..561606+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTTATCAACAGCGAGGATGAGTTTCTGAGCGACAGCTCTGGGCA
ATTAGATCTTTTATCGGTGAAGCATAATTTACAATCAGTGCCTGACGAAA
TTCTGAACCAAGCAACCACTTCAAGAAGAGCGTCGGGGAAAGCTCACCAA
ACTACGAACCCGGAAGAACCAGCATGGGTGTTGGACCATTCCCAATCCCG
TCCCACGGATCGAGAGAATCGTCAGCGAGTTCTAGCTTCATTGTCTGAAG
ATGAAGATGACGATAGCATCATTGACTTAGTTTCGCAAGAGCCTAACCTT
GAGGACACGCAAAATACGGCCAACGACGTGACCGAGGAGAATGGCATAAG
CGGTCTGAACGCTGTGCAGAAACGTCCAAGATCCCAAAAGGTCTCTCACA
CTCCAAAAAATTCTCTGCCGTTGATGATGGCGCCGAAGATTAACGATTCT
TTACTTCTCTTGCAAAGCAGTGACGAAAGCCTTGATCTAAGTGGAGATAT
TGGGGCGGTTGGTCGAGTAAAAGTCGCTCAAGACGGCATTTTCTTTGACA
TAAAGGGGGTCGTTTATAGAGTATCTTCCCATGCTACAAACACAGCATGT
GTTGTTCAAATGGGAGAAGATGAAGCTCGTGTGACCTCGGTTATGGATGA
AGTGCTGACGTTGCACATGGATCGAACCCTTTTTGCTTCAGACGAGATCA
TCATAAACGGAAACCTAGGTGACCACACTGAGGAAGAAAGCTTAGTTAGA
GAGGACGGGAGAAATGATGAGCAGCTTGGAGGAGGAAAGAGAAATATGGA
AAGCAGTTCAGCTGGTGTAAGGGGGACGATATTAGGATCAAAGTGA
back to top