Gchil7196.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7196.t1
Unique Name	Gchil7196.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	292

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:486420..487295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705797.1
PFAMs	peroxidase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00092
KEGG ko	ko:K00434
KEGG Reaction	R00644
KEGG Pathway	ko00053,ko00480,map00053,map00480
Evalue	5.05e-110
EggNOG OGs	COG0685@1\|root,2QR1E@2759\|Eukaryota
EC	1.11.1.11
Description	cytochrome-c peroxidase activity
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7196	Gchil7196	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 486420..487295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7196.t1.start1	Gchil7196.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 486420..486422 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7196.t1.CDS1	Gchil7196.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 486420..487295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7196.t1.exon1	Gchil7196.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 486420..487295 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7196.t1.stop1	Gchil7196.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 487293..487295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7196.t1	Gchil7196.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 486420..487295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:486420..487295+
coding sequence from alignment at tig00004441_pilon:486420..487295+

mRNA sequence

>Gchil7196.t1 ID=Gchil7196.t1|Name=Gchil7196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MNAFVSPYSALRAISAPSTLAAVNSRSTSFLSRPAPFRAHLAKLCNRSYA
VRASLEEDVRGELNKLYEKTPCMPIMVRLAWHDSGTYSAAENTGGANASI
RFTPEKSHGANNGLNIAMDLLEPIKQQYPDISYADLYQLASVAAIEYSGG
PKIPFRMGRMDATEADCTPDGRLPDADKGMSHLRDIFYRMGFNDLEITTL
SGAHTLGRAHAERSGFDGPWTKVPVVFDNSYYVEILKDEPDPDLLRLTSD
LALLDTSETKALCEKYAGSQDEFFEDYKVAHQKLSELGCFK*

spliced messenger RNA

>Gchil7196.t1 ID=Gchil7196.t1|Name=Gchil7196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004441_pilon:486420..487295+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCCTTCGTATCGCCCTATTCAGCCCTCCGTGCCATCTCCGCTCC
GTCGACCTTAGCGGCTGTCAACTCGAGAAGTACCTCGTTCCTTTCACGAC
CGGCGCCGTTCAGAGCACATTTGGCGAAACTATGCAATCGTTCGTATGCC
GTGAGAGCCTCTCTTGAAGAAGATGTGCGAGGGGAACTCAACAAACTCTA
TGAGAAAACACCGTGCATGCCCATTATGGTGCGTCTTGCATGGCACGACT
CGGGTACCTATAGCGCCGCTGAAAACACAGGAGGCGCGAACGCCTCAATT
CGCTTCACTCCTGAAAAATCACATGGAGCCAACAATGGACTCAACATAGC
CATGGATCTTCTTGAACCTATCAAACAACAGTATCCCGATATTTCTTACG
CTGATCTCTATCAACTGGCAAGCGTAGCTGCCATTGAATATTCTGGCGGC
CCAAAGATCCCGTTTCGAATGGGAAGAATGGACGCCACAGAAGCAGATTG
TACACCTGATGGAAGGTTACCTGATGCGGACAAGGGAATGAGCCATCTTC
GAGATATCTTCTATCGCATGGGATTTAATGATTTGGAGATTACCACGCTG
AGTGGTGCTCATACTTTGGGGCGTGCGCATGCCGAGCGATCTGGGTTTGA
TGGTCCTTGGACAAAGGTTCCGGTGGTGTTTGATAACTCGTACTACGTGG
AGATACTGAAGGATGAGCCTGATCCTGATCTTTTGCGTCTCACAAGTGAC
TTGGCCCTCCTTGATACGTCTGAGACAAAGGCTTTGTGTGAGAAGTATGC
TGGGTCTCAAGATGAATTCTTTGAAGACTACAAGGTGGCGCACCAAAAAC
TCAGTGAGCTTGGGTGCTTCAAGTAG

protein sequence of Gchil7196.t1

>Gchil7196.t1 ID=Gchil7196.t1|Name=Gchil7196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MNAFVSPYSALRAISAPSTLAAVNSRSTSFLSRPAPFRAHLAKLCNRSYA
VRASLEEDVRGELNKLYEKTPCMPIMVRLAWHDSGTYSAAENTGGANASI
RFTPEKSHGANNGLNIAMDLLEPIKQQYPDISYADLYQLASVAAIEYSGG
PKIPFRMGRMDATEADCTPDGRLPDADKGMSHLRDIFYRMGFNDLEITTL
SGAHTLGRAHAERSGFDGPWTKVPVVFDNSYYVEILKDEPDPDLLRLTSD
LALLDTSETKALCEKYAGSQDEFFEDYKVAHQKLSELGCFK*

mRNA from alignment at tig00004441_pilon:486420..487295+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7196.t1 ID=Gchil7196.t1|Name=Gchil7196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004441_pilon:486420..487295+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCCTTCGTATCGCCCTATTCAGCCCTCCGTGCCATCTCCGCTCC
GTCGACCTTAGCGGCTGTCAACTCGAGAAGTACCTCGTTCCTTTCACGAC
CGGCGCCGTTCAGAGCACATTTGGCGAAACTATGCAATCGTTCGTATGCC
GTGAGAGCCTCTCTTGAAGAAGATGTGCGAGGGGAACTCAACAAACTCTA
TGAGAAAACACCGTGCATGCCCATTATGGTGCGTCTTGCATGGCACGACT
CGGGTACCTATAGCGCCGCTGAAAACACAGGAGGCGCGAACGCCTCAATT
CGCTTCACTCCTGAAAAATCACATGGAGCCAACAATGGACTCAACATAGC
CATGGATCTTCTTGAACCTATCAAACAACAGTATCCCGATATTTCTTACG
CTGATCTCTATCAACTGGCAAGCGTAGCTGCCATTGAATATTCTGGCGGC
CCAAAGATCCCGTTTCGAATGGGAAGAATGGACGCCACAGAAGCAGATTG
TACACCTGATGGAAGGTTACCTGATGCGGACAAGGGAATGAGCCATCTTC
GAGATATCTTCTATCGCATGGGATTTAATGATTTGGAGATTACCACGCTG
AGTGGTGCTCATACTTTGGGGCGTGCGCATGCCGAGCGATCTGGGTTTGA
TGGTCCTTGGACAAAGGTTCCGGTGGTGTTTGATAACTCGTACTACGTGG
AGATACTGAAGGATGAGCCTGATCCTGATCTTTTGCGTCTCACAAGTGAC
TTGGCCCTCCTTGATACGTCTGAGACAAAGGCTTTGTGTGAGAAGTATGC
TGGGTCTCAAGATGAATTCTTTGAAGACTACAAGGTGGCGCACCAAAAAC
TCAGTGAGCTTGGGTGCTTCAAGTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:486420..487295+

>Gchil7196.t1 ID=Gchil7196.t1|Name=Gchil7196.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00004441_pilon:486420..487295+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGCCTTCGTATCGCCCTATTCAGCCCTCCGTGCCATCTCCGCTCC
GTCGACCTTAGCGGCTGTCAACTCGAGAAGTACCTCGTTCCTTTCACGAC
CGGCGCCGTTCAGAGCACATTTGGCGAAACTATGCAATCGTTCGTATGCC
GTGAGAGCCTCTCTTGAAGAAGATGTGCGAGGGGAACTCAACAAACTCTA
TGAGAAAACACCGTGCATGCCCATTATGGTGCGTCTTGCATGGCACGACT
CGGGTACCTATAGCGCCGCTGAAAACACAGGAGGCGCGAACGCCTCAATT
CGCTTCACTCCTGAAAAATCACATGGAGCCAACAATGGACTCAACATAGC
CATGGATCTTCTTGAACCTATCAAACAACAGTATCCCGATATTTCTTACG
CTGATCTCTATCAACTGGCAAGCGTAGCTGCCATTGAATATTCTGGCGGC
CCAAAGATCCCGTTTCGAATGGGAAGAATGGACGCCACAGAAGCAGATTG
TACACCTGATGGAAGGTTACCTGATGCGGACAAGGGAATGAGCCATCTTC
GAGATATCTTCTATCGCATGGGATTTAATGATTTGGAGATTACCACGCTG
AGTGGTGCTCATACTTTGGGGCGTGCGCATGCCGAGCGATCTGGGTTTGA
TGGTCCTTGGACAAAGGTTCCGGTGGTGTTTGATAACTCGTACTACGTGG
AGATACTGAAGGATGAGCCTGATCCTGATCTTTTGCGTCTCACAAGTGAC
TTGGCCCTCCTTGATACGTCTGAGACAAAGGCTTTGTGTGAGAAGTATGC
TGGGTCTCAAGATGAATTCTTTGAAGACTACAAGGTGGCGCACCAAAAAC
TCAGTGAGCTTGGGTGCTTCAAGTAG