Gchil7190.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7190.t1
Unique Name	Gchil7190.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	381

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:473245..474387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	402777.KB235903_gene2482
PFAMs	GAF,GAF_2,HAMP,HATPase_c,HisKA,PAS_3,PAS_4,PAS_9,Response_reg,dCache_1
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03320
KEGG TC	1.A.11
Evalue	4.97e-13
EggNOG OGs	COG0642@1\|root,COG2199@1\|root,COG2203@1\|root,COG3437@1\|root,COG2203@2\|Bacteria,COG2205@2\|Bacteria,COG3437@2\|Bacteria,COG3706@2\|Bacteria,1G09B@1117\|Cyanobacteria,1H9EM@1150\|Oscillatoriales
Description	Signal Transduction Histidine Kinase
COG category	T
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7190	Gchil7190	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 473245..474387 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7190.t1.start1	Gchil7190.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 473245..473247 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7190.t1.CDS1	Gchil7190.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 473245..474387 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7190.t1.exon1	Gchil7190.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 473245..474387 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7190.t1.stop1	Gchil7190.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 474385..474387 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7190.t1	Gchil7190.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 473245..474387 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:473245..474387+
coding sequence from alignment at tig00004441_pilon:473245..474387+

mRNA sequence

>Gchil7190.t1 ID=Gchil7190.t1|Name=Gchil7190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp
MESSAQLVLNFPSQVVVFGDDNLPSERHPDILREPQEYKNELDLALQLED
SSGFLQEPHRLHVHALDVSSFQASDVTHSDQSRENTDIQRNLNVFVTAAD
GDSGSVDDTSARDVQNHASATDACSPTGVKAAVRRNVSHTRRCRAKVNSN
FERLLEVLPEPPLGVEIKHKAQILQRAIDYYRHVSCRNRQLEMQLALRSP
SAIHRWVESVIRKAPVLKDALKSFMAMICLTNNWKYAELWSPQTRRGSSC
ILLKYVTGAVPPTVEGNTLHRLRTYRDFSRKYNFAPRCGVPGRVFLTMRP
EWLAVLSDPVAFLRAPHAMRNGVEVTFAVPIIVNGSVQMVVEFFDTDRRD
YDPKTLNMANEIGAVFGKAFSEMQAPCSFF*

spliced messenger RNA

>Gchil7190.t1 ID=Gchil7190.t1|Name=Gchil7190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004441_pilon:473245..474387+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCAGTGCGCAGCTTGTGCTCAATTTCCCCTCACAAGTCGTTGT
GTTTGGCGATGATAATCTTCCCTCTGAGCGCCATCCTGACATTCTTCGAG
AACCACAAGAGTACAAAAACGAACTTGATCTCGCCTTGCAACTTGAAGAC
AGCTCAGGGTTTTTACAAGAGCCACACAGGCTTCACGTCCACGCGTTGGA
TGTCTCTTCATTCCAAGCTTCAGACGTGACGCATTCGGATCAAAGTCGAG
AGAATACAGACATTCAGCGGAATTTGAATGTGTTTGTCACTGCAGCTGAC
GGAGACAGTGGTTCTGTAGATGATACTTCAGCCCGGGACGTGCAAAATCA
TGCGAGTGCAACGGACGCATGTTCTCCCACGGGAGTAAAAGCTGCGGTTC
GTCGGAATGTGTCTCATACTCGTCGGTGCCGAGCCAAAGTGAATTCTAAC
TTTGAACGTCTACTAGAAGTGTTGCCAGAGCCACCACTGGGCGTAGAGAT
CAAGCACAAGGCTCAGATACTACAGCGTGCCATCGATTACTACCGACATG
TAAGCTGCAGAAACAGGCAGCTCGAAATGCAGCTTGCGCTTAGATCACCC
TCTGCGATACACCGTTGGGTTGAATCCGTTATAAGAAAAGCGCCAGTGCT
GAAAGATGCACTGAAATCATTCATGGCCATGATCTGTCTTACAAATAACT
GGAAGTACGCAGAACTATGGTCGCCTCAAACGCGGCGCGGGTCGTCGTGC
ATTTTGCTCAAGTACGTCACTGGGGCTGTTCCACCGACTGTGGAAGGAAA
CACTCTGCACAGATTAAGGACATATCGAGACTTTTCCCGAAAGTACAATT
TTGCGCCCCGATGCGGCGTACCAGGACGTGTGTTCCTCACCATGAGACCT
GAATGGCTTGCGGTTCTGAGTGATCCTGTGGCGTTTCTTCGCGCACCACA
TGCAATGCGGAACGGGGTGGAGGTGACGTTTGCAGTTCCTATAATCGTGA
ATGGCAGTGTACAGATGGTGGTGGAGTTCTTTGACACCGATCGGAGGGAT
TATGATCCCAAGACTCTGAACATGGCAAATGAGATTGGTGCGGTGTTTGG
AAAGGCATTTAGTGAGATGCAGGCTCCATGTTCGTTCTTTTAG

protein sequence of Gchil7190.t1

>Gchil7190.t1 ID=Gchil7190.t1|Name=Gchil7190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=381bp
MESSAQLVLNFPSQVVVFGDDNLPSERHPDILREPQEYKNELDLALQLED
SSGFLQEPHRLHVHALDVSSFQASDVTHSDQSRENTDIQRNLNVFVTAAD
GDSGSVDDTSARDVQNHASATDACSPTGVKAAVRRNVSHTRRCRAKVNSN
FERLLEVLPEPPLGVEIKHKAQILQRAIDYYRHVSCRNRQLEMQLALRSP
SAIHRWVESVIRKAPVLKDALKSFMAMICLTNNWKYAELWSPQTRRGSSC
ILLKYVTGAVPPTVEGNTLHRLRTYRDFSRKYNFAPRCGVPGRVFLTMRP
EWLAVLSDPVAFLRAPHAMRNGVEVTFAVPIIVNGSVQMVVEFFDTDRRD
YDPKTLNMANEIGAVFGKAFSEMQAPCSFF*

mRNA from alignment at tig00004441_pilon:473245..474387+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7190.t1 ID=Gchil7190.t1|Name=Gchil7190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00004441_pilon:473245..474387+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCAGTGCGCAGCTTGTGCTCAATTTCCCCTCACAAGTCGTTGT
GTTTGGCGATGATAATCTTCCCTCTGAGCGCCATCCTGACATTCTTCGAG
AACCACAAGAGTACAAAAACGAACTTGATCTCGCCTTGCAACTTGAAGAC
AGCTCAGGGTTTTTACAAGAGCCACACAGGCTTCACGTCCACGCGTTGGA
TGTCTCTTCATTCCAAGCTTCAGACGTGACGCATTCGGATCAAAGTCGAG
AGAATACAGACATTCAGCGGAATTTGAATGTGTTTGTCACTGCAGCTGAC
GGAGACAGTGGTTCTGTAGATGATACTTCAGCCCGGGACGTGCAAAATCA
TGCGAGTGCAACGGACGCATGTTCTCCCACGGGAGTAAAAGCTGCGGTTC
GTCGGAATGTGTCTCATACTCGTCGGTGCCGAGCCAAAGTGAATTCTAAC
TTTGAACGTCTACTAGAAGTGTTGCCAGAGCCACCACTGGGCGTAGAGAT
CAAGCACAAGGCTCAGATACTACAGCGTGCCATCGATTACTACCGACATG
TAAGCTGCAGAAACAGGCAGCTCGAAATGCAGCTTGCGCTTAGATCACCC
TCTGCGATACACCGTTGGGTTGAATCCGTTATAAGAAAAGCGCCAGTGCT
GAAAGATGCACTGAAATCATTCATGGCCATGATCTGTCTTACAAATAACT
GGAAGTACGCAGAACTATGGTCGCCTCAAACGCGGCGCGGGTCGTCGTGC
ATTTTGCTCAAGTACGTCACTGGGGCTGTTCCACCGACTGTGGAAGGAAA
CACTCTGCACAGATTAAGGACATATCGAGACTTTTCCCGAAAGTACAATT
TTGCGCCCCGATGCGGCGTACCAGGACGTGTGTTCCTCACCATGAGACCT
GAATGGCTTGCGGTTCTGAGTGATCCTGTGGCGTTTCTTCGCGCACCACA
TGCAATGCGGAACGGGGTGGAGGTGACGTTTGCAGTTCCTATAATCGTGA
ATGGCAGTGTACAGATGGTGGTGGAGTTCTTTGACACCGATCGGAGGGAT
TATGATCCCAAGACTCTGAACATGGCAAATGAGATTGGTGCGGTGTTTGG
AAAGGCATTTAGTGAGATGCAGGCTCCATGTTCGTTCTTTTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:473245..474387+

>Gchil7190.t1 ID=Gchil7190.t1|Name=Gchil7190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00004441_pilon:473245..474387+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCAGTGCGCAGCTTGTGCTCAATTTCCCCTCACAAGTCGTTGT
GTTTGGCGATGATAATCTTCCCTCTGAGCGCCATCCTGACATTCTTCGAG
AACCACAAGAGTACAAAAACGAACTTGATCTCGCCTTGCAACTTGAAGAC
AGCTCAGGGTTTTTACAAGAGCCACACAGGCTTCACGTCCACGCGTTGGA
TGTCTCTTCATTCCAAGCTTCAGACGTGACGCATTCGGATCAAAGTCGAG
AGAATACAGACATTCAGCGGAATTTGAATGTGTTTGTCACTGCAGCTGAC
GGAGACAGTGGTTCTGTAGATGATACTTCAGCCCGGGACGTGCAAAATCA
TGCGAGTGCAACGGACGCATGTTCTCCCACGGGAGTAAAAGCTGCGGTTC
GTCGGAATGTGTCTCATACTCGTCGGTGCCGAGCCAAAGTGAATTCTAAC
TTTGAACGTCTACTAGAAGTGTTGCCAGAGCCACCACTGGGCGTAGAGAT
CAAGCACAAGGCTCAGATACTACAGCGTGCCATCGATTACTACCGACATG
TAAGCTGCAGAAACAGGCAGCTCGAAATGCAGCTTGCGCTTAGATCACCC
TCTGCGATACACCGTTGGGTTGAATCCGTTATAAGAAAAGCGCCAGTGCT
GAAAGATGCACTGAAATCATTCATGGCCATGATCTGTCTTACAAATAACT
GGAAGTACGCAGAACTATGGTCGCCTCAAACGCGGCGCGGGTCGTCGTGC
ATTTTGCTCAAGTACGTCACTGGGGCTGTTCCACCGACTGTGGAAGGAAA
CACTCTGCACAGATTAAGGACATATCGAGACTTTTCCCGAAAGTACAATT
TTGCGCCCCGATGCGGCGTACCAGGACGTGTGTTCCTCACCATGAGACCT
GAATGGCTTGCGGTTCTGAGTGATCCTGTGGCGTTTCTTCGCGCACCACA
TGCAATGCGGAACGGGGTGGAGGTGACGTTTGCAGTTCCTATAATCGTGA
ATGGCAGTGTACAGATGGTGGTGGAGTTCTTTGACACCGATCGGAGGGAT
TATGATCCCAAGACTCTGAACATGGCAAATGAGATTGGTGCGGTGTTTGG
AAAGGCATTTAGTGAGATGCAGGCTCCATGTTCGTTCTTTTAG