Gchil7187.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7187.t1
Unique Name	Gchil7187.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:457391..458359 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003284029.1
PFAMs	RNase_Zc3h12a
Max annot lvl	554915\|Amoebozoa
Evalue	7.48e-17
EggNOG OGs	KOG3777@1\|root,KOG3777@2759\|Eukaryota,3X9FW@554915\|Amoebozoa
Description	Zc3h12a-like Ribonuclease NYN domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7187	Gchil7187	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 457391..458359 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7187.t1.start1	Gchil7187.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 457391..457393 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7187.t1.CDS1	Gchil7187.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 457391..458359 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7187.t1.exon1	Gchil7187.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 457391..458359 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7187.t1.stop1	Gchil7187.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 458357..458359 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7187.t1	Gchil7187.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 457391..458359 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:457391..458359+
coding sequence from alignment at tig00004441_pilon:457391..458359+

mRNA sequence

>Gchil7187.t1 ID=Gchil7187.t1|Name=Gchil7187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=323bp
MTATNDAEDIELQKALQRSRKETNLEEAMLAEALAASLSTRDEEIARSMQ
REQFHILEKSLCDDNPSVVSDEDPSLSAPSVNGQSVAHGSLHASNVSSPS
HEPSSPDWTHLKSPNQFHHRRTPPTSSHRRSLQNETNFASASRAGAEFAP
QRSDESSSAPVVVIDGQNVGYSYGGGKHNFRAKGVKVVLDYYLNKGMKAV
AMLPACKVDTRFGLLNDRVADDPALLKSLAAQDLVAFTPAGSHDDHFLLA
YAKQKNIDIISNDRFKKEVSEQETGSASRALQDFLNEHLIPYTFVNGEFM
PNPNPHELSRAGHCSRGVRYRR*

spliced messenger RNA

>Gchil7187.t1 ID=Gchil7187.t1|Name=Gchil7187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:457391..458359+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCACCAACGATGCAGAAGACATAGAGCTGCAGAAAGCCTTGCA
ACGTAGCCGGAAAGAAACCAACTTGGAAGAAGCAATGCTCGCGGAAGCTT
TAGCAGCGAGTCTTAGCACTAGGGACGAGGAGATTGCACGTTCTATGCAA
AGAGAGCAGTTCCATATACTTGAGAAAAGCCTCTGTGATGATAACCCGTC
CGTTGTGTCCGACGAAGATCCTAGTCTTTCAGCCCCGTCGGTGAATGGTC
AAAGCGTCGCACATGGTTCCTTGCATGCATCAAACGTTTCTTCACCAAGT
CATGAACCGTCATCCCCCGACTGGACGCATCTGAAGTCCCCGAATCAGTT
CCATCATCGTCGCACGCCACCAACTTCTTCCCACAGACGTTCTCTTCAGA
ACGAAACTAATTTCGCTTCAGCGTCACGGGCGGGTGCGGAGTTTGCACCG
CAGCGCTCGGATGAATCTTCCTCGGCACCTGTTGTGGTCATTGACGGACA
AAATGTCGGATACTCTTACGGTGGGGGTAAGCACAATTTTCGTGCCAAGG
GCGTAAAAGTAGTTCTCGACTACTATTTAAACAAAGGCATGAAAGCAGTC
GCAATGCTACCTGCGTGTAAAGTTGACACTCGATTCGGTTTACTTAATGA
CCGTGTTGCAGATGATCCTGCTCTTTTGAAGAGTCTTGCAGCTCAAGATC
TTGTTGCATTCACTCCCGCGGGATCCCATGATGATCATTTCCTTCTGGCT
TATGCGAAACAAAAGAACATTGATATAATTTCTAATGATCGGTTCAAGAA
AGAGGTTTCTGAACAGGAAACGGGGTCTGCATCCCGTGCCTTGCAGGACT
TTCTCAACGAACATTTGATACCCTACACATTTGTGAATGGCGAGTTCATG
CCGAATCCAAATCCTCACGAACTTAGCAGAGCTGGCCATTGTAGTCGCGG
AGTGCGATATAGAAGATAG

protein sequence of Gchil7187.t1

>Gchil7187.t1 ID=Gchil7187.t1|Name=Gchil7187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MTATNDAEDIELQKALQRSRKETNLEEAMLAEALAASLSTRDEEIARSMQ
REQFHILEKSLCDDNPSVVSDEDPSLSAPSVNGQSVAHGSLHASNVSSPS
HEPSSPDWTHLKSPNQFHHRRTPPTSSHRRSLQNETNFASASRAGAEFAP
QRSDESSSAPVVVIDGQNVGYSYGGGKHNFRAKGVKVVLDYYLNKGMKAV
AMLPACKVDTRFGLLNDRVADDPALLKSLAAQDLVAFTPAGSHDDHFLLA
YAKQKNIDIISNDRFKKEVSEQETGSASRALQDFLNEHLIPYTFVNGEFM
PNPNPHELSRAGHCSRGVRYRR*

mRNA from alignment at tig00004441_pilon:457391..458359+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7187.t1 ID=Gchil7187.t1|Name=Gchil7187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:457391..458359+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCCACCAACGATGCAGAAGACATAGAGCTGCAGAAAGCCTTGCA
ACGTAGCCGGAAAGAAACCAACTTGGAAGAAGCAATGCTCGCGGAAGCTT
TAGCAGCGAGTCTTAGCACTAGGGACGAGGAGATTGCACGTTCTATGCAA
AGAGAGCAGTTCCATATACTTGAGAAAAGCCTCTGTGATGATAACCCGTC
CGTTGTGTCCGACGAAGATCCTAGTCTTTCAGCCCCGTCGGTGAATGGTC
AAAGCGTCGCACATGGTTCCTTGCATGCATCAAACGTTTCTTCACCAAGT
CATGAACCGTCATCCCCCGACTGGACGCATCTGAAGTCCCCGAATCAGTT
CCATCATCGTCGCACGCCACCAACTTCTTCCCACAGACGTTCTCTTCAGA
ACGAAACTAATTTCGCTTCAGCGTCACGGGCGGGTGCGGAGTTTGCACCG
CAGCGCTCGGATGAATCTTCCTCGGCACCTGTTGTGGTCATTGACGGACA
AAATGTCGGATACTCTTACGGTGGGGGTAAGCACAATTTTCGTGCCAAGG
GCGTAAAAGTAGTTCTCGACTACTATTTAAACAAAGGCATGAAAGCAGTC
GCAATGCTACCTGCGTGTAAAGTTGACACTCGATTCGGTTTACTTAATGA
CCGTGTTGCAGATGATCCTGCTCTTTTGAAGAGTCTTGCAGCTCAAGATC
TTGTTGCATTCACTCCCGCGGGATCCCATGATGATCATTTCCTTCTGGCT
TATGCGAAACAAAAGAACATTGATATAATTTCTAATGATCGGTTCAAGAA
AGAGGTTTCTGAACAGGAAACGGGGTCTGCATCCCGTGCCTTGCAGGACT
TTCTCAACGAACATTTGATACCCTACACATTTGTGAATGGCGAGTTCATG
CCGAATCCAAATCCTCACGAACTTAGCAGAGCTGGCCATTGTAGTCGCGG
AGTGCGATATAGAAGATAG

Coding sequence (CDS) from alignment at tig00004441_pilon:457391..458359+

>Gchil7187.t1 ID=Gchil7187.t1|Name=Gchil7187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:457391..458359+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCCACCAACGATGCAGAAGACATAGAGCTGCAGAAAGCCTTGCA
ACGTAGCCGGAAAGAAACCAACTTGGAAGAAGCAATGCTCGCGGAAGCTT
TAGCAGCGAGTCTTAGCACTAGGGACGAGGAGATTGCACGTTCTATGCAA
AGAGAGCAGTTCCATATACTTGAGAAAAGCCTCTGTGATGATAACCCGTC
CGTTGTGTCCGACGAAGATCCTAGTCTTTCAGCCCCGTCGGTGAATGGTC
AAAGCGTCGCACATGGTTCCTTGCATGCATCAAACGTTTCTTCACCAAGT
CATGAACCGTCATCCCCCGACTGGACGCATCTGAAGTCCCCGAATCAGTT
CCATCATCGTCGCACGCCACCAACTTCTTCCCACAGACGTTCTCTTCAGA
ACGAAACTAATTTCGCTTCAGCGTCACGGGCGGGTGCGGAGTTTGCACCG
CAGCGCTCGGATGAATCTTCCTCGGCACCTGTTGTGGTCATTGACGGACA
AAATGTCGGATACTCTTACGGTGGGGGTAAGCACAATTTTCGTGCCAAGG
GCGTAAAAGTAGTTCTCGACTACTATTTAAACAAAGGCATGAAAGCAGTC
GCAATGCTACCTGCGTGTAAAGTTGACACTCGATTCGGTTTACTTAATGA
CCGTGTTGCAGATGATCCTGCTCTTTTGAAGAGTCTTGCAGCTCAAGATC
TTGTTGCATTCACTCCCGCGGGATCCCATGATGATCATTTCCTTCTGGCT
TATGCGAAACAAAAGAACATTGATATAATTTCTAATGATCGGTTCAAGAA
AGAGGTTTCTGAACAGGAAACGGGGTCTGCATCCCGTGCCTTGCAGGACT
TTCTCAACGAACATTTGATACCCTACACATTTGTGAATGGCGAGTTCATG
CCGAATCCAAATCCTCACGAACTTAGCAGAGCTGGCCATTGTAGTCGCGG
AGTGCGATATAGAAGATAG