Gchil7183.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7183.t1
Unique Name	Gchil7183.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:446630..447994 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN20158
PFAMs	RIO1,Rio2_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07179
KEGG Pathway	ko03008,map03008
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Evalue	3.51e-114
EggNOG OGs	COG0478@1\|root,KOG2268@2759\|Eukaryota,37MZW@33090\|Viridiplantae,3GD34@35493\|Streptophyta
EC	2.7.11.1
Description	serine threonine-protein kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7183	Gchil7183	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 446630..447994 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7183.t1.stop1	Gchil7183.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 446630..446632 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7183.t1.CDS1	Gchil7183.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 446630..447994 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7183.t1.exon1	Gchil7183.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 446630..447994 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7183.t1.start1	Gchil7183.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 447992..447994 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7183.t1	Gchil7183.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 446630..447994 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:446630..447994-
coding sequence from alignment at tig00004441_pilon:446630..447994-

mRNA sequence

>Gchil7183.t1 ID=Gchil7183.t1|Name=Gchil7183.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=455bp
MKLDAAALRYLAEDDFRVLTAVEMGMRNHEVVPIPLISTISGLKHGGYMK
ALKQVHKHKLVHRESKPYVGYRLTSMGYDYLALNALVKRGVIDAVGRPLG
VGKEADVFVVSASESLMDQYPELADTPHLAMKLHRLGRTSFRAVKSKRDY
LVHRKSASWIYFSRLAAIKEYSFMCALHARLFPVPRPLGQSRHVVVMELC
PGILLTHINEMPNPKQVANNLIQVAIRLAEHGLIHCDLNEFNVIVDDDGA
VNVIDFPQMVSTRHADAEQLFARDVNGIQRFFEHKFGVSPKEMLNPTLAS
IIRETCQDEQLDVVLSASGFKNMHQDGFYGTQDLDEQGSDHDLLTFDIKS
LQISNSDEGADEHVDDMHTKRESQLGQGLTVCEQDMQHQHQVDVDEDSSD
CFNPNAVINKPLIEMRVRKQRSNQTKRRQMAKRNIVKDSQKRKLESEVRC
ETWL*

spliced messenger RNA

>Gchil7183.t1 ID=Gchil7183.t1|Name=Gchil7183.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004441_pilon:446630..447994- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTCGATGCAGCCGCGCTGCGCTATCTTGCAGAAGATGATTTTCG
CGTCCTTACAGCCGTGGAAATGGGCATGCGAAACCATGAGGTCGTTCCCA
TCCCGCTCATATCCACCATCTCCGGGCTCAAGCACGGTGGCTACATGAAG
GCGCTCAAACAAGTTCATAAGCATAAGCTCGTGCATCGCGAAAGCAAACC
CTACGTCGGATATAGACTCACTTCTATGGGGTATGACTATCTTGCCCTCA
ACGCACTAGTCAAACGCGGTGTGATCGACGCGGTGGGACGGCCGTTGGGC
GTTGGCAAGGAGGCTGATGTATTTGTCGTATCTGCTTCAGAAAGTCTCAT
GGACCAGTATCCAGAGCTAGCTGATACTCCCCATCTCGCTATGAAGCTTC
ATCGCTTGGGACGTACTTCCTTTCGAGCTGTTAAAAGCAAGAGAGATTAT
TTGGTTCATCGCAAGTCGGCTAGTTGGATATATTTTTCGCGACTGGCTGC
TATCAAGGAATATTCATTTATGTGCGCCTTGCATGCGCGTCTCTTTCCAG
TGCCGAGACCTCTGGGCCAATCTCGTCATGTTGTGGTTATGGAACTTTGT
CCCGGCATTTTGCTCACCCACATTAATGAAATGCCTAATCCGAAGCAAGT
GGCAAACAATCTCATACAGGTTGCAATTAGACTTGCTGAGCATGGGTTGA
TACACTGTGATCTCAATGAATTCAATGTTATTGTCGATGATGATGGTGCT
GTGAATGTTATCGATTTTCCGCAGATGGTTTCGACACGTCATGCCGATGC
TGAGCAGCTATTTGCGCGTGATGTTAATGGTATACAAAGATTTTTCGAAC
ACAAGTTTGGCGTTTCCCCGAAGGAGATGTTAAACCCTACGTTGGCGAGT
ATTATTCGAGAAACGTGTCAGGACGAGCAGCTGGACGTTGTTCTTTCAGC
GAGTGGATTCAAGAATATGCACCAGGATGGCTTCTATGGCACTCAGGACT
TGGATGAGCAAGGAAGCGACCACGACCTCTTGACGTTTGACATCAAGAGC
CTACAAATATCAAATTCCGACGAGGGCGCTGATGAACATGTGGATGATAT
GCATACTAAAAGGGAGTCTCAACTTGGCCAGGGACTCACAGTTTGTGAAC
AGGACATGCAGCACCAACATCAAGTGGATGTCGATGAAGACTCGTCCGAT
TGTTTTAATCCGAATGCTGTAATAAACAAGCCTCTTATCGAAATGCGAGT
ACGAAAGCAGCGGTCGAATCAAACAAAAAGGCGGCAAATGGCCAAGAGAA
ACATAGTCAAAGATTCTCAAAAACGGAAACTCGAATCTGAAGTACGATGT
GAGACATGGTTGTAG

protein sequence of Gchil7183.t1

>Gchil7183.t1 ID=Gchil7183.t1|Name=Gchil7183.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=455bp
MKLDAAALRYLAEDDFRVLTAVEMGMRNHEVVPIPLISTISGLKHGGYMK
ALKQVHKHKLVHRESKPYVGYRLTSMGYDYLALNALVKRGVIDAVGRPLG
VGKEADVFVVSASESLMDQYPELADTPHLAMKLHRLGRTSFRAVKSKRDY
LVHRKSASWIYFSRLAAIKEYSFMCALHARLFPVPRPLGQSRHVVVMELC
PGILLTHINEMPNPKQVANNLIQVAIRLAEHGLIHCDLNEFNVIVDDDGA
VNVIDFPQMVSTRHADAEQLFARDVNGIQRFFEHKFGVSPKEMLNPTLAS
IIRETCQDEQLDVVLSASGFKNMHQDGFYGTQDLDEQGSDHDLLTFDIKS
LQISNSDEGADEHVDDMHTKRESQLGQGLTVCEQDMQHQHQVDVDEDSSD
CFNPNAVINKPLIEMRVRKQRSNQTKRRQMAKRNIVKDSQKRKLESEVRC
ETWL*

mRNA from alignment at tig00004441_pilon:446630..447994-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7183.t1 ID=Gchil7183.t1|Name=Gchil7183.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00004441_pilon:446630..447994- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTCGATGCAGCCGCGCTGCGCTATCTTGCAGAAGATGATTTTCG
CGTCCTTACAGCCGTGGAAATGGGCATGCGAAACCATGAGGTCGTTCCCA
TCCCGCTCATATCCACCATCTCCGGGCTCAAGCACGGTGGCTACATGAAG
GCGCTCAAACAAGTTCATAAGCATAAGCTCGTGCATCGCGAAAGCAAACC
CTACGTCGGATATAGACTCACTTCTATGGGGTATGACTATCTTGCCCTCA
ACGCACTAGTCAAACGCGGTGTGATCGACGCGGTGGGACGGCCGTTGGGC
GTTGGCAAGGAGGCTGATGTATTTGTCGTATCTGCTTCAGAAAGTCTCAT
GGACCAGTATCCAGAGCTAGCTGATACTCCCCATCTCGCTATGAAGCTTC
ATCGCTTGGGACGTACTTCCTTTCGAGCTGTTAAAAGCAAGAGAGATTAT
TTGGTTCATCGCAAGTCGGCTAGTTGGATATATTTTTCGCGACTGGCTGC
TATCAAGGAATATTCATTTATGTGCGCCTTGCATGCGCGTCTCTTTCCAG
TGCCGAGACCTCTGGGCCAATCTCGTCATGTTGTGGTTATGGAACTTTGT
CCCGGCATTTTGCTCACCCACATTAATGAAATGCCTAATCCGAAGCAAGT
GGCAAACAATCTCATACAGGTTGCAATTAGACTTGCTGAGCATGGGTTGA
TACACTGTGATCTCAATGAATTCAATGTTATTGTCGATGATGATGGTGCT
GTGAATGTTATCGATTTTCCGCAGATGGTTTCGACACGTCATGCCGATGC
TGAGCAGCTATTTGCGCGTGATGTTAATGGTATACAAAGATTTTTCGAAC
ACAAGTTTGGCGTTTCCCCGAAGGAGATGTTAAACCCTACGTTGGCGAGT
ATTATTCGAGAAACGTGTCAGGACGAGCAGCTGGACGTTGTTCTTTCAGC
GAGTGGATTCAAGAATATGCACCAGGATGGCTTCTATGGCACTCAGGACT
TGGATGAGCAAGGAAGCGACCACGACCTCTTGACGTTTGACATCAAGAGC
CTACAAATATCAAATTCCGACGAGGGCGCTGATGAACATGTGGATGATAT
GCATACTAAAAGGGAGTCTCAACTTGGCCAGGGACTCACAGTTTGTGAAC
AGGACATGCAGCACCAACATCAAGTGGATGTCGATGAAGACTCGTCCGAT
TGTTTTAATCCGAATGCTGTAATAAACAAGCCTCTTATCGAAATGCGAGT
ACGAAAGCAGCGGTCGAATCAAACAAAAAGGCGGCAAATGGCCAAGAGAA
ACATAGTCAAAGATTCTCAAAAACGGAAACTCGAATCTGAAGTACGATGT
GAGACATGGTTGTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:446630..447994-

>Gchil7183.t1 ID=Gchil7183.t1|Name=Gchil7183.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00004441_pilon:446630..447994- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTCGATGCAGCCGCGCTGCGCTATCTTGCAGAAGATGATTTTCG
CGTCCTTACAGCCGTGGAAATGGGCATGCGAAACCATGAGGTCGTTCCCA
TCCCGCTCATATCCACCATCTCCGGGCTCAAGCACGGTGGCTACATGAAG
GCGCTCAAACAAGTTCATAAGCATAAGCTCGTGCATCGCGAAAGCAAACC
CTACGTCGGATATAGACTCACTTCTATGGGGTATGACTATCTTGCCCTCA
ACGCACTAGTCAAACGCGGTGTGATCGACGCGGTGGGACGGCCGTTGGGC
GTTGGCAAGGAGGCTGATGTATTTGTCGTATCTGCTTCAGAAAGTCTCAT
GGACCAGTATCCAGAGCTAGCTGATACTCCCCATCTCGCTATGAAGCTTC
ATCGCTTGGGACGTACTTCCTTTCGAGCTGTTAAAAGCAAGAGAGATTAT
TTGGTTCATCGCAAGTCGGCTAGTTGGATATATTTTTCGCGACTGGCTGC
TATCAAGGAATATTCATTTATGTGCGCCTTGCATGCGCGTCTCTTTCCAG
TGCCGAGACCTCTGGGCCAATCTCGTCATGTTGTGGTTATGGAACTTTGT
CCCGGCATTTTGCTCACCCACATTAATGAAATGCCTAATCCGAAGCAAGT
GGCAAACAATCTCATACAGGTTGCAATTAGACTTGCTGAGCATGGGTTGA
TACACTGTGATCTCAATGAATTCAATGTTATTGTCGATGATGATGGTGCT
GTGAATGTTATCGATTTTCCGCAGATGGTTTCGACACGTCATGCCGATGC
TGAGCAGCTATTTGCGCGTGATGTTAATGGTATACAAAGATTTTTCGAAC
ACAAGTTTGGCGTTTCCCCGAAGGAGATGTTAAACCCTACGTTGGCGAGT
ATTATTCGAGAAACGTGTCAGGACGAGCAGCTGGACGTTGTTCTTTCAGC
GAGTGGATTCAAGAATATGCACCAGGATGGCTTCTATGGCACTCAGGACT
TGGATGAGCAAGGAAGCGACCACGACCTCTTGACGTTTGACATCAAGAGC
CTACAAATATCAAATTCCGACGAGGGCGCTGATGAACATGTGGATGATAT
GCATACTAAAAGGGAGTCTCAACTTGGCCAGGGACTCACAGTTTGTGAAC
AGGACATGCAGCACCAACATCAAGTGGATGTCGATGAAGACTCGTCCGAT
TGTTTTAATCCGAATGCTGTAATAAACAAGCCTCTTATCGAAATGCGAGT
ACGAAAGCAGCGGTCGAATCAAACAAAAAGGCGGCAAATGGCCAAGAGAA
ACATAGTCAAAGATTCTCAAAAACGGAAACTCGAATCTGAAGTACGATGT
GAGACATGGTTGTAG