Gchil7177.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7177.t1
Unique NameGchil7177.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length603
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:430704..432512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR382CT
PFAMsNa_H_Exchanger
Max annot lvl2759|Eukaryota
KEGG koko:K03316
KEGG TC2.A.36
Evalue7.37e-68
EggNOG OGsCOG0025@1|root,KOG1965@2759|Eukaryota
Descriptionpotassium:proton antiporter activity
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7177Gchil7177Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 430704..432512 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7177.t1.stop1Gchil7177.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 430704..430706 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7177.t1.CDS1Gchil7177.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 430704..432512 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7177.t1.exon1Gchil7177.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 430704..432512 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7177.t1.start1Gchil7177.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 432510..432512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7177.t1Gchil7177.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 430704..432512 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7177.t1 ID=Gchil7177.t1|Name=Gchil7177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp
MILLSISLFLHVINSHFIGIPSSVAMAFGAILMTVSLLILSHIPMLGVCN
VVEAFRSLLKDFPELLLNYMLGFLLFAAAIEVDFRKVERIRSTVVALSVV
STFLSTFIVGTMTYFLMQNIAHMDFAWCLLFGAIVSPTDPVTVMSILAQK
PDLLPESTRYFVICESLLNDAMGVVLYGIFKEIVITPDITATGIISVLFE
NVVKECLMGTIIGVLFAWIAYSAIRTTKEPLLQVLITFVLVGNINMVCRI
IHASIPLASVGAGLFIGTYAPKFAMGEATDTFHKVWQLADETLNSVLFLL
IGAADLFWNPQDLGWENVLLLSVSTVCISLFARFLAVVVPLLAIIVLEWA
FNLHLRHSTVKYRGGTIAVLTWAGMRGGISIALALGVPDAFAKHAIPGHM
TNGQLIFFMTFILVVFSIVVQGMLFEPVVNMINRVSYQILPSGGLSTMAS
QMSLARPDYGAIVIDSGDESPLSGELMWEDNDQIFKDFPEGSDSSPVAEF
EREAFPRAHTDTRLTAAAPNIQNMPHQHQRAPSNIFNDLPQLREPPTIQQ
VISNLQRGTFSFNKWFALPQQSQDVASKNRLKRSRTEPDTHKFLKHDSRE
SG*
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spliced messenger RNA

>Gchil7177.t1 ID=Gchil7177.t1|Name=Gchil7177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00004441_pilon:430704..432512- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTACTCTCAATCTCGCTCTTTCTGCACGTCATCAACAGCCATTT
CATCGGCATTCCCTCCTCCGTCGCCATGGCCTTTGGCGCCATTCTCATGA
CCGTCTCCCTGCTCATTCTCAGCCACATCCCCATGCTGGGCGTTTGCAAC
GTCGTCGAGGCATTCCGCTCCTTGCTCAAGGACTTTCCGGAACTGCTTCT
CAACTACATGCTCGGCTTTCTCCTCTTTGCCGCCGCCATTGAAGTCGACT
TTCGAAAGGTCGAGCGCATTCGCTCCACCGTCGTCGCCCTCAGTGTCGTC
TCCACCTTCCTGTCCACTTTCATCGTCGGCACCATGACCTACTTCCTCAT
GCAGAACATTGCCCACATGGACTTTGCCTGGTGCCTGCTCTTCGGCGCAA
TCGTGTCCCCCACCGACCCTGTCACTGTCATGTCCATCCTGGCCCAAAAG
CCCGACTTGCTCCCCGAGTCCACCAGGTACTTTGTCATCTGCGAGAGTCT
TCTCAACGATGCCATGGGCGTCGTGCTGTACGGCATTTTCAAGGAAATCG
TCATTACGCCCGACATCACAGCCACAGGAATCATTTCCGTGCTGTTCGAG
AACGTCGTCAAGGAGTGTTTAATGGGCACCATCATCGGCGTCTTGTTCGC
CTGGATCGCTTACTCTGCCATTCGCACCACCAAGGAGCCCCTACTACAGG
TTCTCATCACCTTTGTACTGGTGGGTAACATCAACATGGTCTGCCGTATC
ATCCACGCCTCCATTCCGCTCGCGTCAGTAGGCGCTGGCCTTTTCATCGG
CACCTATGCCCCCAAGTTTGCCATGGGCGAAGCCACGGACACATTCCACA
AAGTGTGGCAGCTCGCAGATGAGACTCTCAATTCAGTGCTCTTCTTGCTT
ATCGGCGCGGCTGATCTCTTCTGGAATCCACAAGACCTTGGCTGGGAAAA
CGTCTTGTTGCTTAGCGTCTCCACTGTTTGCATCTCGCTTTTTGCACGCT
TCCTCGCCGTGGTCGTTCCACTGCTGGCTATCATTGTGCTGGAATGGGCG
TTCAATCTTCACCTCCGACATTCCACCGTCAAGTACCGAGGCGGTACCAT
AGCCGTTTTGACATGGGCAGGAATGCGAGGCGGCATTTCTATTGCCTTGG
CTCTTGGTGTGCCAGACGCGTTCGCCAAACACGCTATACCGGGCCACATG
ACAAATGGACAGCTTATCTTTTTCATGACTTTTATTTTAGTGGTGTTCTC
AATCGTTGTACAGGGAATGCTTTTTGAGCCGGTTGTGAACATGATCAACC
GAGTGAGCTACCAGATTCTTCCTAGTGGCGGTCTAAGTACCATGGCATCC
CAAATGAGTCTGGCTCGTCCAGATTATGGTGCAATTGTTATCGACTCAGG
CGACGAATCCCCCTTGTCCGGAGAATTAATGTGGGAGGATAACGATCAAA
TATTCAAAGACTTCCCGGAAGGGTCAGACTCAAGCCCAGTGGCAGAATTC
GAGCGAGAAGCTTTTCCTCGAGCACATACCGATACCAGACTGACTGCCGC
AGCACCAAACATCCAGAATATGCCACATCAGCATCAGCGAGCGCCTTCAA
ACATCTTCAACGACCTTCCTCAACTGCGCGAACCCCCGACAATCCAACAA
GTCATCTCGAACCTGCAGCGTGGCACTTTTTCGTTCAACAAATGGTTTGC
GTTGCCGCAGCAGAGTCAGGATGTGGCATCGAAGAACCGCCTTAAACGCT
CTCGTACAGAGCCTGATACACATAAGTTTTTGAAACACGACTCACGCGAA
TCTGGCTAG
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protein sequence of Gchil7177.t1

>Gchil7177.t1 ID=Gchil7177.t1|Name=Gchil7177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=603bp
MILLSISLFLHVINSHFIGIPSSVAMAFGAILMTVSLLILSHIPMLGVCN
VVEAFRSLLKDFPELLLNYMLGFLLFAAAIEVDFRKVERIRSTVVALSVV
STFLSTFIVGTMTYFLMQNIAHMDFAWCLLFGAIVSPTDPVTVMSILAQK
PDLLPESTRYFVICESLLNDAMGVVLYGIFKEIVITPDITATGIISVLFE
NVVKECLMGTIIGVLFAWIAYSAIRTTKEPLLQVLITFVLVGNINMVCRI
IHASIPLASVGAGLFIGTYAPKFAMGEATDTFHKVWQLADETLNSVLFLL
IGAADLFWNPQDLGWENVLLLSVSTVCISLFARFLAVVVPLLAIIVLEWA
FNLHLRHSTVKYRGGTIAVLTWAGMRGGISIALALGVPDAFAKHAIPGHM
TNGQLIFFMTFILVVFSIVVQGMLFEPVVNMINRVSYQILPSGGLSTMAS
QMSLARPDYGAIVIDSGDESPLSGELMWEDNDQIFKDFPEGSDSSPVAEF
EREAFPRAHTDTRLTAAAPNIQNMPHQHQRAPSNIFNDLPQLREPPTIQQ
VISNLQRGTFSFNKWFALPQQSQDVASKNRLKRSRTEPDTHKFLKHDSRE
SG*
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mRNA from alignment at tig00004441_pilon:430704..432512-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7177.t1 ID=Gchil7177.t1|Name=Gchil7177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00004441_pilon:430704..432512- (Gracilaria chilensis NLEC103_M9 male)
ATGATCCTACTCTCAATCTCGCTCTTTCTGCACGTCATCAACAGCCATTT
CATCGGCATTCCCTCCTCCGTCGCCATGGCCTTTGGCGCCATTCTCATGA
CCGTCTCCCTGCTCATTCTCAGCCACATCCCCATGCTGGGCGTTTGCAAC
GTCGTCGAGGCATTCCGCTCCTTGCTCAAGGACTTTCCGGAACTGCTTCT
CAACTACATGCTCGGCTTTCTCCTCTTTGCCGCCGCCATTGAAGTCGACT
TTCGAAAGGTCGAGCGCATTCGCTCCACCGTCGTCGCCCTCAGTGTCGTC
TCCACCTTCCTGTCCACTTTCATCGTCGGCACCATGACCTACTTCCTCAT
GCAGAACATTGCCCACATGGACTTTGCCTGGTGCCTGCTCTTCGGCGCAA
TCGTGTCCCCCACCGACCCTGTCACTGTCATGTCCATCCTGGCCCAAAAG
CCCGACTTGCTCCCCGAGTCCACCAGGTACTTTGTCATCTGCGAGAGTCT
TCTCAACGATGCCATGGGCGTCGTGCTGTACGGCATTTTCAAGGAAATCG
TCATTACGCCCGACATCACAGCCACAGGAATCATTTCCGTGCTGTTCGAG
AACGTCGTCAAGGAGTGTTTAATGGGCACCATCATCGGCGTCTTGTTCGC
CTGGATCGCTTACTCTGCCATTCGCACCACCAAGGAGCCCCTACTACAGG
TTCTCATCACCTTTGTACTGGTGGGTAACATCAACATGGTCTGCCGTATC
ATCCACGCCTCCATTCCGCTCGCGTCAGTAGGCGCTGGCCTTTTCATCGG
CACCTATGCCCCCAAGTTTGCCATGGGCGAAGCCACGGACACATTCCACA
AAGTGTGGCAGCTCGCAGATGAGACTCTCAATTCAGTGCTCTTCTTGCTT
ATCGGCGCGGCTGATCTCTTCTGGAATCCACAAGACCTTGGCTGGGAAAA
CGTCTTGTTGCTTAGCGTCTCCACTGTTTGCATCTCGCTTTTTGCACGCT
TCCTCGCCGTGGTCGTTCCACTGCTGGCTATCATTGTGCTGGAATGGGCG
TTCAATCTTCACCTCCGACATTCCACCGTCAAGTACCGAGGCGGTACCAT
AGCCGTTTTGACATGGGCAGGAATGCGAGGCGGCATTTCTATTGCCTTGG
CTCTTGGTGTGCCAGACGCGTTCGCCAAACACGCTATACCGGGCCACATG
ACAAATGGACAGCTTATCTTTTTCATGACTTTTATTTTAGTGGTGTTCTC
AATCGTTGTACAGGGAATGCTTTTTGAGCCGGTTGTGAACATGATCAACC
GAGTGAGCTACCAGATTCTTCCTAGTGGCGGTCTAAGTACCATGGCATCC
CAAATGAGTCTGGCTCGTCCAGATTATGGTGCAATTGTTATCGACTCAGG
CGACGAATCCCCCTTGTCCGGAGAATTAATGTGGGAGGATAACGATCAAA
TATTCAAAGACTTCCCGGAAGGGTCAGACTCAAGCCCAGTGGCAGAATTC
GAGCGAGAAGCTTTTCCTCGAGCACATACCGATACCAGACTGACTGCCGC
AGCACCAAACATCCAGAATATGCCACATCAGCATCAGCGAGCGCCTTCAA
ACATCTTCAACGACCTTCCTCAACTGCGCGAACCCCCGACAATCCAACAA
GTCATCTCGAACCTGCAGCGTGGCACTTTTTCGTTCAACAAATGGTTTGC
GTTGCCGCAGCAGAGTCAGGATGTGGCATCGAAGAACCGCCTTAAACGCT
CTCGTACAGAGCCTGATACACATAAGTTTTTGAAACACGACTCACGCGAA
TCTGGCTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:430704..432512-

>Gchil7177.t1 ID=Gchil7177.t1|Name=Gchil7177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00004441_pilon:430704..432512- (Gracilaria chilensis NLEC103_M9 male)
ATGATCCTACTCTCAATCTCGCTCTTTCTGCACGTCATCAACAGCCATTT
CATCGGCATTCCCTCCTCCGTCGCCATGGCCTTTGGCGCCATTCTCATGA
CCGTCTCCCTGCTCATTCTCAGCCACATCCCCATGCTGGGCGTTTGCAAC
GTCGTCGAGGCATTCCGCTCCTTGCTCAAGGACTTTCCGGAACTGCTTCT
CAACTACATGCTCGGCTTTCTCCTCTTTGCCGCCGCCATTGAAGTCGACT
TTCGAAAGGTCGAGCGCATTCGCTCCACCGTCGTCGCCCTCAGTGTCGTC
TCCACCTTCCTGTCCACTTTCATCGTCGGCACCATGACCTACTTCCTCAT
GCAGAACATTGCCCACATGGACTTTGCCTGGTGCCTGCTCTTCGGCGCAA
TCGTGTCCCCCACCGACCCTGTCACTGTCATGTCCATCCTGGCCCAAAAG
CCCGACTTGCTCCCCGAGTCCACCAGGTACTTTGTCATCTGCGAGAGTCT
TCTCAACGATGCCATGGGCGTCGTGCTGTACGGCATTTTCAAGGAAATCG
TCATTACGCCCGACATCACAGCCACAGGAATCATTTCCGTGCTGTTCGAG
AACGTCGTCAAGGAGTGTTTAATGGGCACCATCATCGGCGTCTTGTTCGC
CTGGATCGCTTACTCTGCCATTCGCACCACCAAGGAGCCCCTACTACAGG
TTCTCATCACCTTTGTACTGGTGGGTAACATCAACATGGTCTGCCGTATC
ATCCACGCCTCCATTCCGCTCGCGTCAGTAGGCGCTGGCCTTTTCATCGG
CACCTATGCCCCCAAGTTTGCCATGGGCGAAGCCACGGACACATTCCACA
AAGTGTGGCAGCTCGCAGATGAGACTCTCAATTCAGTGCTCTTCTTGCTT
ATCGGCGCGGCTGATCTCTTCTGGAATCCACAAGACCTTGGCTGGGAAAA
CGTCTTGTTGCTTAGCGTCTCCACTGTTTGCATCTCGCTTTTTGCACGCT
TCCTCGCCGTGGTCGTTCCACTGCTGGCTATCATTGTGCTGGAATGGGCG
TTCAATCTTCACCTCCGACATTCCACCGTCAAGTACCGAGGCGGTACCAT
AGCCGTTTTGACATGGGCAGGAATGCGAGGCGGCATTTCTATTGCCTTGG
CTCTTGGTGTGCCAGACGCGTTCGCCAAACACGCTATACCGGGCCACATG
ACAAATGGACAGCTTATCTTTTTCATGACTTTTATTTTAGTGGTGTTCTC
AATCGTTGTACAGGGAATGCTTTTTGAGCCGGTTGTGAACATGATCAACC
GAGTGAGCTACCAGATTCTTCCTAGTGGCGGTCTAAGTACCATGGCATCC
CAAATGAGTCTGGCTCGTCCAGATTATGGTGCAATTGTTATCGACTCAGG
CGACGAATCCCCCTTGTCCGGAGAATTAATGTGGGAGGATAACGATCAAA
TATTCAAAGACTTCCCGGAAGGGTCAGACTCAAGCCCAGTGGCAGAATTC
GAGCGAGAAGCTTTTCCTCGAGCACATACCGATACCAGACTGACTGCCGC
AGCACCAAACATCCAGAATATGCCACATCAGCATCAGCGAGCGCCTTCAA
ACATCTTCAACGACCTTCCTCAACTGCGCGAACCCCCGACAATCCAACAA
GTCATCTCGAACCTGCAGCGTGGCACTTTTTCGTTCAACAAATGGTTTGC
GTTGCCGCAGCAGAGTCAGGATGTGGCATCGAAGAACCGCCTTAAACGCT
CTCGTACAGAGCCTGATACACATAAGTTTTTGAAACACGACTCACGCGAA
TCTGGCTAG
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